Maloof Lab:Jose M. Jimenez-Gomez - Revision history

http://www.openwetware.org/index.php?title=Maloof_Lab:Jose_M._Jimenez-Gomez&feed=atom&action=history Maloof Lab:Jose M. Jimenez-Gomez - Revision history 2013-06-20T09:10:54Z Revision history for this page on the wiki MediaWiki 1.13.2 http://www.openwetware.org/index.php?title=Maloof_Lab:Jose_M._Jimenez-Gomez&diff=575523&oldid=prev Jose M Jimenez-Gomez at 12:29, 11 January 2012 2012-01-11T12:29:04Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 12:29, 11 January 2012</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 10:</td> <td colspan="2" class="diff-lineno">Line 10:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><font color='red'>The information contained in this website may be outdated.</font><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><font color='red'>The information contained in this website may be outdated.</font><br></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Please use my this website instead: [http://jimenez-gomez_lab.openwetware.<del class="diffchange diffchange-inline">com </del>Jimenez Gomez Lab].</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Please use my this website instead: [http://jimenez-gomez_lab.openwetware.<ins class="diffchange diffchange-inline">org </ins>Jimenez Gomez Lab].</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></p></div></td></tr>  </table>

Jose M Jimenez-Gomez http://www.openwetware.org/index.php?title=Maloof_Lab:Jose_M._Jimenez-Gomez&diff=575522&oldid=prev Jose M Jimenez-Gomez at 12:28, 11 January 2012 2012-01-11T12:28:21Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 12:28, 11 January 2012</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 7:</td> <td colspan="2" class="diff-lineno">Line 7:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><h2>Jose M Jimenez-Gomez, PhD.</h2></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><h2>Jose M Jimenez-Gomez, PhD.</h2></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[mailto:jmjimenez@ucdavis.edu Contact]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[mailto:jmjimenez@ucdavis.edu Contact]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><p></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><br></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><font color='red'>The information contained in this website may be outdated.</font><br></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">Please use my this website instead: [http://jimenez-gomez_lab.openwetware.com Jimenez Gomez Lab].</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><br></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></p></ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Image:Pepe_b&w.jpg|right|135px]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Image:Pepe_b&w.jpg|right|135px]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|}</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|}</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr>  </table>

Jose M Jimenez-Gomez http://www.openwetware.org/index.php?title=Maloof_Lab:Jose_M._Jimenez-Gomez&diff=468942&oldid=prev Jmjimenez at 15:02, 29 October 2010 2010-10-29T15:02:35Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 15:02, 29 October 2010</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 48:</td> <td colspan="2" class="diff-lineno">Line 48:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>In the publication of this work, ELF3 alleles of Bay-0 and Sha are shown to differentially affect the shade avoidance response in flowering time and circadian rhtyhms <cite>Jimenez-Gomez10</cite></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>In the publication of this work, ELF3 alleles of Bay-0 and Sha are shown to differentially affect the shade avoidance response in flowering time and circadian rhtyhms <cite>Jimenez-Gomez10</cite></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001100 here].</del></div></td><td colspan="2"> </td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr>  </table>

Jmjimenez http://www.openwetware.org/index.php?title=Maloof_Lab:Jose_M._Jimenez-Gomez&diff=468941&oldid=prev Jmjimenez at 15:01, 29 October 2010 2010-10-29T15:01:32Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 15:01, 29 October 2010</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 47:</td> <td colspan="2" class="diff-lineno">Line 47:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">The resulting manuscript has been published </del>in <del class="diffchange diffchange-inline">2010 </del>and <del class="diffchange diffchange-inline">can be found </del>[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001100 here].</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">In the publication of this work, ELF3 alleles of Bay-0 and Sha are shown to differentially affect the shade avoidance response </ins>in <ins class="diffchange diffchange-inline">flowering time </ins>and <ins class="diffchange diffchange-inline">circadian rhtyhms <cite>Jimenez-Gomez10</cite></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001100 here].</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td colspan="2" class="diff-lineno">Line 84:</td> <td colspan="2" class="diff-lineno">Line 85:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#GO_Classification pmid=10802651</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#GO_Classification pmid=10802651</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#Jimenez-Gomez09 pmid=19575805</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#Jimenez-Gomez09 pmid=19575805</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">#Jimenez-Gomez10 pmid=20838594</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></biblio></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></biblio></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|}</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|}</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>__NOTOC__</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>__NOTOC__</div></td></tr>  </table>

Jmjimenez http://www.openwetware.org/index.php?title=Maloof_Lab:Jose_M._Jimenez-Gomez&diff=453061&oldid=prev Jmjimenez at 21:04, 9 September 2010 2010-09-09T21:04:40Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 21:04, 9 September 2010</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 36:</td> <td colspan="2" class="diff-lineno">Line 36:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>We focused in a chromosomal region containing close to 400 genes to fine map and identify the gene responsible for the differences found in the response to shade in the Bay-0 x Sha population. To do this we employed traditional genetic approaches as well as genomic and network analysis. This network analysis is based on coexpression of the candidate genes with other genes across microarray experiments <cite>Riken</cite>, colocalization with expression QTLs <cite>West07</cite>, functional categorization <cite>GO_Classification</cite> and presence of polymorphisms between the parental lines <cite>Clark07</cite>. The use of this bioinformatic approach allowed us to identify ELF3 as the candidate gene for the shade avoidance QTL, which was then confirmed by traditional <del class="diffchange diffchange-inline">fina </del>mapping and cloning.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>We focused in a chromosomal region containing close to 400 genes to fine map and identify the gene responsible for the differences found in the response to shade in the Bay-0 x Sha population. To do this we employed traditional genetic approaches as well as genomic and network analysis. This network analysis is based on coexpression of the candidate genes with other genes across microarray experiments <cite>Riken</cite>, colocalization with expression QTLs <cite>West07</cite>, functional categorization <cite>GO_Classification</cite> and presence of polymorphisms between the parental lines <cite>Clark07</cite>. The use of this bioinformatic approach allowed us to identify ELF3 as the candidate gene for the shade avoidance QTL, which was then confirmed by traditional <ins class="diffchange diffchange-inline">fine </ins>mapping and cloning.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr>  </table>

Jmjimenez http://www.openwetware.org/index.php?title=Maloof_Lab:Jose_M._Jimenez-Gomez&diff=453060&oldid=prev Jmjimenez at 21:04, 9 September 2010 2010-09-09T21:04:01Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 21:04, 9 September 2010</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 47:</td> <td colspan="2" class="diff-lineno">Line 47:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>The resulting manuscript has been published in 2010 and can be found <del class="diffchange diffchange-inline">at </del>[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001100 <del class="diffchange diffchange-inline">PLoS Genetics</del>].</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>The resulting manuscript has been published in 2010 and can be found [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001100 <ins class="diffchange diffchange-inline">here</ins>].</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr>  </table>

Jmjimenez http://www.openwetware.org/index.php?title=Maloof_Lab:Jose_M._Jimenez-Gomez&diff=453059&oldid=prev Jmjimenez at 20:57, 9 September 2010 2010-09-09T20:57:21Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 20:57, 9 September 2010</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 47:</td> <td colspan="2" class="diff-lineno">Line 47:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>The resulting manuscript has been published in 2010 and can be found [<del class="diffchange diffchange-inline">here</del>].</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>The resulting manuscript has been published in 2010 and can be found <ins class="diffchange diffchange-inline">at </ins>[<ins class="diffchange diffchange-inline">http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001100 PLoS Genetics</ins>].</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr>  </table>

Jmjimenez http://www.openwetware.org/index.php?title=Maloof_Lab:Jose_M._Jimenez-Gomez&diff=452665&oldid=prev Jmjimenez at 20:37, 8 September 2010 2010-09-08T20:37:08Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 20:37, 8 September 2010</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 53:</td> <td colspan="2" class="diff-lineno">Line 53:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>----</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>----</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Tomato is a specially interesting species because of its natural history, phenotypic <del class="diffchange diffchange-inline">variation </del>among its wild relatives and economic importance. To study the genomic variation among the wild tomato species, we first mined the numerous tomato EST sequences available in the databases in search of polymorphisms. In this dataset, we estimated divergence rates among genes from selected species, and obtained a new set of molecular markers useful in natural variation studies. We performed functional and evolutionary pre-genomic analyses, which gave us an idea of which gene families evolve more rapidly/slowly and have been important during tomato domestication. The results from this work were published <cite>Jimenez-Gomez09</cite> and are available to the community [http://www.plb.ucdavis.edu/labs/maloof/TomatoSNP/index.asp here].</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Tomato is a specially interesting species because of its natural history, phenotypic <ins class="diffchange diffchange-inline">diversity </ins>among its wild relatives and economic importance. To study the genomic variation among the wild tomato species, we first mined the numerous tomato EST sequences available in the databases in search of polymorphisms. In this dataset, we estimated divergence rates among genes from selected species, and obtained a new set of molecular markers useful in natural variation studies. We performed functional and evolutionary pre-genomic analyses, which gave us an idea of which gene families evolve more rapidly/slowly and have been important during tomato domestication. The results from this work were published <cite>Jimenez-Gomez09</cite> and are available to the community [http://www.plb.ucdavis.edu/labs/maloof/TomatoSNP/index.asp here].</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Now, we are using RNAseq to sequence the transcriptome of four tomato species grown in sun and shade: <i>S. lycopersicum var M82</i>, <i>S. pennellii</i>, <i>S. pimpinellifollium</i> and <i>S. habrochaites</i>.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Now, we are using RNAseq to sequence the transcriptome of four tomato species grown in sun and shade: <i>S. lycopersicum var M82</i>, <i>S. pennellii</i>, <i>S. pimpinellifollium</i> and <i>S. habrochaites</i>.</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>We developed bioinformatic pipelines to analyze the more than 400 million reads obtained fronm different tissues, species and conditions.  The pipeline include scripts that filter and map the reads, detect polymorphisms, calculte their effect on the proteins, perform evolutionary analyses and calculate genome-wide expression levels. Using this methods we <del class="diffchange diffchange-inline">have identifies </del>more than <del class="diffchange diffchange-inline">half a million </del>polymorphisms in these four speceies and calculated expression <del class="diffchange diffchange-inline">differneces </del>between species, tissues and environmental conditions.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>We developed bioinformatic pipelines to analyze the more than 400 million reads obtained fronm different tissues, species and conditions.  The pipeline include scripts that filter and map the reads, detect polymorphisms, calculte their effect on the proteins, perform evolutionary analyses and calculate genome-wide expression levels. Using this methods we <ins class="diffchange diffchange-inline">identified </ins>more than <ins class="diffchange diffchange-inline">500.000 </ins>polymorphisms in these four speceies and calculated expression <ins class="diffchange diffchange-inline">differences </ins>between species, tissues and environmental conditions.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr>  </table>

Jmjimenez http://www.openwetware.org/index.php?title=Maloof_Lab:Jose_M._Jimenez-Gomez&diff=452664&oldid=prev Jmjimenez at 20:31, 8 September 2010 2010-09-08T20:31:58Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 20:31, 8 September 2010</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 16:</td> <td colspan="2" class="diff-lineno">Line 16:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>In 2005, I completed my PhD. in JM Martinez-Zapater's lab at the [http://www.cnb.uam.es CNB] (National Center for Biotechnology) in Madrid, Spain, where I performed a quantitative genetic analysis of flowering time in tomato <cite>Jimenez-Gomez07</cite>.<br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>In 2005, I completed my PhD. in JM Martinez-Zapater's lab at the [http://www.cnb.uam.es CNB] (National Center for Biotechnology) in Madrid, Spain, where I performed a quantitative genetic analysis of flowering time in tomato <cite>Jimenez-Gomez07</cite>.<br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>My main interests are based on the application of modern genetic and bioinformatic techniques to the study of plant natural variation, evolution and domestication. To do this I survey different plant species and <del class="diffchange diffchange-inline">natural </del>populations presenting variation in interesting characteristics, and analyze the responsible molecular mechanism. Here is an small description of some of my recent work in the Maloof lab:</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>My main interests are based on the application of modern genetic and bioinformatic techniques to the study of plant natural variation, evolution and domestication. To do this I survey different plant species and populations presenting variation in interesting characteristics, and analyze the responsible molecular mechanism. Here is an small description of some of my recent work in the Maloof lab:</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr>  </table>

Jmjimenez http://www.openwetware.org/index.php?title=Maloof_Lab:Jose_M._Jimenez-Gomez&diff=452663&oldid=prev Jmjimenez at 20:30, 8 September 2010 2010-09-08T20:30:34Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 20:30, 8 September 2010</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 16:</td> <td colspan="2" class="diff-lineno">Line 16:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>In 2005, I completed my PhD. in JM Martinez-Zapater's lab at the [http://www.cnb.uam.es CNB] (National Center for Biotechnology) in Madrid, Spain, where I performed a quantitative genetic analysis of flowering time in tomato <cite>Jimenez-Gomez07</cite>.<br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>In 2005, I completed my PhD. in JM Martinez-Zapater's lab at the [http://www.cnb.uam.es CNB] (National Center for Biotechnology) in Madrid, Spain, where I performed a quantitative genetic analysis of flowering time in tomato <cite>Jimenez-Gomez07</cite>.<br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>My main interests are based on the application of modern genetic and bioinformatic techniques to the study of plant evolution and domestication. To do this I survey different plant species and natural populations presenting variation in interesting characteristics, and analyze the responsible molecular mechanism. Here is an small description of some of my recent work in the Maloof lab:</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>My main interests are based on the application of modern genetic and bioinformatic techniques to the study of plant <ins class="diffchange diffchange-inline">natural variation, </ins>evolution and domestication. To do this I survey different plant species and natural populations presenting variation in interesting characteristics, and analyze the responsible molecular mechanism. Here is an small description of some of my recent work in the Maloof lab:</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr>  </table>

Jmjimenez