Maloof Lab:Publications

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Publications Kerwin, R. E., Jimenez-Gomez, J. M., Fulop, D., Harmer, S. L., Maloof, J. N. & Kliebenstein, D. J. Network Quantitative Trait Loci Mapping of Circadian Clock Outputs Identifies Metabolic Pathway-to-Clock Linkages in Arabidopsis. Plant Cell 23, 471-485 (2011). [1] Chang, C. S., Maloof, J. N. & Wu, S. H. COP1-mediated degradation of BBX22/LZF1 optimizes seedling development in Arabidopsis. Plant Physiol (2011). [2] Nozue, K., Harmer, S. L. & Maloof, J. N. Genomic analysis of circadian clock-, light-, and growth-correlated genes reveals PIF5 as a modulator of auxin signaling in Arabidopsis. Plant Physiol (2011). [3] Kim, K., Shin, J., Lee, S. H., Kweon, H. S., Maloof, J. N. & Choi, G. Phytochromes inhibit hypocotyl negative gravitropism by regulating the development of endodermal amyloplasts through phytochrome-interacting factors. Proc Natl Acad Sci U S A 108, 1729-1734 (2011). [4] Maloof, J. N. Recent advances in regulation of flowering. F1000 Biol Rep 2, (2010). [5] Brock, M. T., Dechaine, J. M., Iniguez-Luy, F. L., Maloof, J. N., Stinchcombe, J. R. & Weinig, C. Floral Genetic Architecture: An Examination of QTL Architecture Underlying Floral (Co)Variation Across Environments. Genetics 186, 1451-1465 (2010). [6] Brock, M. T., Maloof, J. N. & Weinig, C. Genes underlying quantitative variation in ecologically important traits: PIF4 (phytochrome interacting factor 4) is associated with variation in internode length, flowering time, and fruit set in Arabidopsis thaliana. Mol Ecol 19, 1187-1199 (2010). [7] Jiménez-Gómez, J. M., Wallace, A. D. & Maloof, J. N. Network analysis identifies ELF3 as a QTL for the shade avoidance response in Arabidopsis. PLoS Genet 6, (2010). [8] Jimenez-Gomez, J. M. & Maloof, J. N. Sequence diversity in three tomato species: SNPs, markers, and molecular evolution. BMC Plant Biol 9, 85 (2009). [9] Jiménez-Gómez, J. M. & Maloof, J. N. Plant research accelerates along the (bio)informatics superhighway: symposium on plant sensing, response and adaptation to the environment. EMBO Rep 10, 568-572 (2009). [10] Schwartz, C., Balasubramanian, S., Warthmann, N., Michael, T. P., Lempe, J., Sureshkumar, S., Kobayashi, Y., Maloof, J. N., Borevitz, J. O., Chory, J. & Weigel, D. Cis-regulatory Changes at FLOWERING LOCUS T Mediate Natural Variation in Flowering Responses of Arabidopsis thaliana. Genetics 183, 723-32, 1SI-7SI (2009). [11] Balasubramanian, S., Schwartz, C., Singh, A., Warthmann, N., Kim, M. C., Maloof, J. N., Loudet, O., Trainer, G. T., Dabi, T., Borevitz, J. O., Chory, J. & Weigel, D. QTL Mapping in New Arabidopsis thaliana Advanced Intercross-Recombinant Inbred Lines. PLoS ONE 4, e4318 (2009). [12] Covington, M. F., Maloof, J. N., Straume, M., Kay, S. A. & Harmer, S. L. Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development. Genome Biol 9, R130 (2008). [13] Filiault, D. L., Wessinger, C. A., Dinneny, J. R., Lutes, J., Borevitz, J. O., Weigel, D., Chory, J. & Maloof, J. N. Amino acid polymorphisms in Arabidopsis phytochrome B cause differential responses to light. Proc Natl Acad Sci U S A 105, 3157-3162 (2008). [14] Weinig, C., Johnston, J. A., Willis, C. G. & Maloof, J. N. Antagonistic multilevel selection on size and architecture in variable density settings. Evolution 61, 58-67 (2007). [15] Nozue, K., Covington, M. F., Duek, P. D., Lorrain, S., Fankhauser, C., Harmer, S. L. & Maloof, J. N. Rhythmic growth explained by coincidence between internal and external cues. Nature 448, 358-361 (2007). [16] Maloof, J. N. Small but not forgotten. Heredity 96, 1-2 (2006). [17] Balasubramanian, S., Sureshkumar, S., Agrawal, M., Michael, T. P., Wessinger, C., Maloof, J. N., Clark, R., Warthmann, N., Chory, J. & Weigel, D. The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana. Nat Genet 38, 711-715 (2006). [18] Nozue, K. & Maloof, J. N. Diurnal regulation of plant growth. Plant Cell Environ 29, 396-408 (2006). Lu, L., Lee, Y. R., Pan, R., Maloof, J. N. & Liu, B. An internal motor kinesin is associated with the Golgi apparatus and plays a role in trichome morphogenesis in Arabidopsis. Mol Biol Cell 16, 811-823 (2005). [19] Maloof, J. N. Plant development: slowing root growth naturally. Curr Biol 14, R395-R396 (2004). [20] Wolyn, D. J., Borevitz, J. O., Loudet, O., Schwartz, C., Maloof, J., Ecker, J. R., Berry, C. C. & Chory, J. Light-response quantitative trait loci identified with composite interval and eXtreme array mapping in Arabidopsis thaliana. Genetics 167, 907-917 (2004). [21] Maloof, J. N. Genomic approaches to analyzing natural variation in Arabidopsis thaliana. Curr Opin Genet Dev 13, 576-582 (2003). Maloof, J. N. QTL for plant growth and morphology. Curr Opin Plant Biol 6, 85-90 (2003). Nemhauser, J. L., Maloof, J. N. & Chory, J. Building integrated models of plant growth and development. Plant Physiol 132, 436-439 (2003). [22]