Maloof Lab:Resources: Difference between revisions
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==RIL Data== | |||
====Col x X==== | ====Col x X==== | ||
[http://www.plb.ucdavis.edu/labs/maloof/resources/At_Col_RIL_combined_gt_db8010206.csv Col x X genotype data] | [http://www.plb.ucdavis.edu/labs/maloof/resources/At_Col_RIL_combined_gt_db8010206.csv Col x X genotype data] | ||
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Phenotypic measurements of Brassica rapa RILs grown in high and low density field plantings. Data collection from Weinig Lab. RILs developed by Federico Iniguez-Luy and Tom Osborn. | Phenotypic measurements of Brassica rapa RILs grown in high and low density field plantings. Data collection from Weinig Lab. RILs developed by Federico Iniguez-Luy and Tom Osborn. | ||
==Association Mapping Data== | |||
====GI==== | ====GI==== | ||
[http://www.plb.ucdavis.edu/labs/maloof/resources/At_GI_haplogroup_fruit_set.xls GI association data] | [http://www.plb.ucdavis.edu/labs/maloof/resources/At_GI_haplogroup_fruit_set.xls GI association data] | ||
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==Sequence Data== | |||
Arabidopsis PHYB Sequences reported in Filiault et al, 2008 (PMID 18287016) are available from NCBI [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=retrieve&db=popset&list_uids=164597985&dopt=ps here] | Arabidopsis PHYB Sequences reported in Filiault et al, 2008 (PMID 18287016) are available from NCBI [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=retrieve&db=popset&list_uids=164597985&dopt=ps here] | ||
Revision as of 13:17, 11 July 2009
Room 2115 |
RIL Data
Col x X
RIL genotypic data from MSATs assayed in the Maloof Lab and by Sequenom SNP analysis performed by Cogenics, inc. RIL Phenotypic data from Weinig Lab field grown plants in Minnesota. For RIL construction, Col was crossed to an unknown accession; resulting F2 plants were self-fertilized until the F8 generation and then genotyped. Genotyping revealed a strong bias to Col genotypes and higher heterozygosity than expected. Subsequent flow cytometry analysis by Brian Dilkes revealed that some RILs are tetraploid and that the Col parent was likely tetraploid. Flow cytometry data will be made available when analysis is complete.
B. Rapa RILs
Phenotypic measurements of Brassica rapa RILs grown in high and low density field plantings. Data collection from Weinig Lab. RILs developed by Federico Iniguez-Luy and Tom Osborn.
Association Mapping Data
GI
Data for GIGANTEA associations as published in Brock et al, 2007 (PMID 17614917)
PHYB
PHYB association data PHYB association R script
Data and R analysis script for PHYB associations as published in Filiault et al, 2008 (PMID 18287016)
PHYC
Data for PHYB and PHYC associations reported in Balasubramanian et al, 2006 (PMID 16732287)
Sequence Data
Arabidopsis PHYB Sequences reported in Filiault et al, 2008 (PMID 18287016) are available from NCBI here
Arabidospis sequences reported by Brock et al, 2007 (PMID 17614917) are available for PHYB, PIF3, PIF4, NDPK2, PKS1, GI, and ATHB2