Matt Gethers/Articles to Read: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
 
(46 intermediate revisions by the same user not shown)
Line 1: Line 1:
=Articles to Read=
=Articles to Read=
[[/Potential Grad Work|Potential Grad Work]]


==Favorite Journals==
==Favorite Journals==
Line 23: Line 25:
Biophysical Journal
Biophysical Journal


==Technical==
Review of Scientific Instruments
 
[[/Coherent Excitations|Coherent Excitations]]
 
[http://nar.oxfordjournals.org/cgi/content/full/37/2/441?etoc Systematic prediction of control proteins and their DNA binding sites]
 
[http://nar.oxfordjournals.org/cgi/content/full/37/2/e14?etoc An unnatural base pair system for efficient PCR amplification and functionalization of DNA molecules]
 
[http://nar.oxfordjournals.org/cgi/content/full/37/2/e16?etoc DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways]
 
[http://pubs.acs.org/doi/full/10.1021/bi801885w Recognition of Abasic Sites and Single Base Bulges in DNA by a Metalloinsertor]
 
[http://pubs.acs.org/doi/full/10.1021/bi801792q Processive and Unidirectional Translocation of Monomeric UvsW Helicase on Single-Stranded DNA]
 
[http://pubs.acs.org/doi/full/10.1021/bi8020718 Monovalent Cation Binding in the Minor Groove of DNA A-Tracts]
 
[http://pubs.acs.org/doi/full/10.1021/bi801538h Circular Dichroism Spectra and Electrophoretic Mobility Shift Assays Show That Human Replication Protein A Binds and Melts Intramolecular G-Quadruplex Structures]
 
[http://www.nature.com/nnano/journal/v4/n2/full/nnano.2008.422.html Top down Bottom up: Power from proteins]
 
[http://www.nature.com/nnano/journal/v4/n2/full/nnano.2008.425.html Biosensors: Nanotubes light up cells]
 
[http://www.nature.com/nnano/journal/v4/n2/abs/nnano.2008.411.html?lang=en Current-driven atomic waterwheels]
 
[http://www.nature.com/nnano/journal/v4/n2/abs/nnano.2008.363.html?lang=en Imaging the electrical conductance of individual carbon nanotubes with photothermal current microscopy]
 
[http://www.nature.com/nnano/journal/v4/n2/abs/nnano.2008.373.html?lang=en One-step DNA-programmed growth of luminescent and biofunctionalized nanocrystals]
 
[http://pubs.acs.org/doi/full/10.1021/jo802037v?cookieSet=1 Functionalized 2′-Amino-α-L-LNA: Directed Positioning of Intercalators for DNA Targeting]
 
[http://pubs.acs.org/doi/full/10.1021/bi802052y Structural Basis for DNA Recognition by the Human PAX3 Homeodomain]
 
[http://pubs.acs.org/doi/full/10.1021/bi801933c The Transcriptional Repressor RYBP Is a Natively Unfolded Protein Which Folds upon Binding to DNA]
 
[http://pubs.acs.org/doi/full/10.1021/bi802336p Supercoil-Accelerated DNA Threading Intercalation]
 
[http://pubs.acs.org/doi/full/10.1021/bi801944g Minor Groove Binding Compounds That Jump a GC Base Pair and Bind to Adjacent AT Base Pair Sites]
 
[http://www.pnas.org/content/106/7/2159.abstract?etoc Electron microscopy of whole cells in liquid with nanometer resolution]
 
[http://jb.asm.org/cgi/content/abstract/191/5/1439?etoc Chromatin Organization and Radio Resistance in the Bacterium Gemmata obscuriglobus]
 
[http://www.ncbi.nlm.nih.gov/pubmed/19239699?ordinalpos=1&itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum A framework for evolutionary systems biology]
 
[http://www.ncbi.nlm.nih.gov/pubmed/19239258?ordinalpos=2&itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum Square-Shaped RNA Particles from Different RNA Folds]
 
[http://pubs.acs.org/doi/abs/10.1021/cb900006h A novel semi-biosynthetic route for artemisinin production using engineered substrate-promiscuous P450BM3]


[http://www.nature.com/nrmicro/journal/v7/n4/full/nrmicro2117.html Prions: Prions hijack the nanotube]
Nanobioscience, IEEE Transactions on


[http://www.nature.com/nrmicro/journal/v7/n4/full/nrmicro2107.html The role of predictive modelling in rationally re-engineering biological systems]
Nanobiotechnology, IET


[http://nar.oxfordjournals.org/cgi/content/full/37/5/1477?etoc Diene-modified nucleotides for the Diels–Alder-mediated functional tagging of DNA]
Nanotechnology, IEEE Transactions on


[http://nar.oxfordjournals.org/cgi/content/full/37/5/e37?etoc DNA sampling: a method for probing protein binding at specific loci on bacterial chromosomes]
Biosensors and Bioelectronics (Search DNA + in vivo)


[http://nar.oxfordjournals.org/cgi/content/full/37/5/e38?etoc Model-based redesign of global transcription regulation]
IEEE Sensors Journal


[http://nar.oxfordjournals.org/cgi/content/full/37/5/e39?etoc An efficient platform for genetic selection and screening of gene switches in Escherichia coli]
Sensor Review


[http://www.springerlink.com/content/j44xnq175114h815/ In vivo molecular sensing in diabetes mellitus: an implantable glucose sensor with direct electron transfer]
Analytical Chemistry


[http://www.pnas.org/content/91/22/10340.abstract Split ubiquitin as a sensor of protein interactions in vivo]
Analytical Biochemistry


[http://jgp.rupress.org/cgi/content/abstract/118/1/63 In Vivo Assessment of Local Phosphodiesterase Activity Using Tailored Cyclic Nucleotide–gated Channels as cAMP Sensors]
Analytical Methods


[http://www.pnas.org/content/83/9/2879.abstract Contact pressures in the human hip joint measured in vivo]
Science and Engineering Ethics


[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=RSINAK000060000006001040000001&idtype=cvips&gifs=yes Imaging radio frequency electron-spin-resonance spectrometer with high resolution and sensitivity for in vivo measurements]
Key word: telemetry


[http://cancerres.aacrjournals.org/cgi/content/abstract/58/7/1562 In Vivo Electron Paramagnetic Resonance Imaging of Tumor Heterogeneity and Oxygenation in a Murine Model]
==Articles==


[http://www.sciencemag.org/cgi/content/abstract/137/3529/499 Intracellular Oxidation-Reduction States in Vivo The microfluorometry of pyridine nucleotide gives a continuous measurement of the oxidation state]
[[/Technical1|Technical 1]]


[http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1141115 Small antennas]
[[/Technical 2|Technical 2]]


[Design and synthesis of a convergent and directional molecular antenna]
[[/Technical 3|Technical 3]]


[http://www3.interscience.wiley.com/journal/104080762/abstract Polypyridine block as molecular antenna in photoluminescence of macromolecular systems]
[[/Technical 4|Technical 4]]


[http://www.sciencemag.org/cgi/content/short/308/5728/1561 Nanoantennas for Light Emission]
[[/Technical 5|Technical 5]]


[http://ieeexplore.ieee.org/search/searchresult.jsp?disp=cit&queryText=(bioelectric%20phenomena%3Cin%3Ede)&valnm=bioelectric+phenomena&reqloc%20=others&history=yes Biolelectric Phenomena search on IEEE]
[[/Technical 6|Technical 6]]


[http://ieeexplore.ieee.org/search/srchabstract.jsp?arnumber=1296827&isnumber=28836&punumber=8&k2dockey=1296827@ieeejrns&query=(antenna+theory%3Cin%3Ede)&pos=7&access=no A review of analytically determined electric fields and currents induced in the human body when exposed to 50-60-Hz electromagnetic fields]
[[/Technical 7|Technical 7]]


[http://ieeexplore.ieee.org/search/srchabstract.jsp?arnumber=4099356&isnumber=4077841&punumber=7361&k2dockey=4099356@ieeejrns&query=(bioelectric+phenomena%3Cin%3Ede)&pos=8&access=no On-Chip Capacitance Sensing for Cell Monitoring Applications]
[[/Technical 8|Technical 8]]


[http://ieeexplore.ieee.org/search/srchabstract.jsp?arnumber=1615820&isnumber=33900&punumber=10755&k2dockey=1615820@ieeecnfs&query=(bioelectric+phenomena%3Cin%3Ede)&pos=11&access=no Nanoelectropulse Intracellular Perturbation and Electropermeabilization Technology: Phospholipid Translocation, Calcium Bursts, Chromatin Rearrangement, Cardiomyocyte Activation, and Tumor Cell Sensitivity]
[[/Technical 9|Technical 9]]


Very Interesting: [http://ieeexplore.ieee.org/search/srchabstract.jsp?arnumber=4562718&isnumber=4562710&punumber=4538204&k2dockey=4562718@ieeecnfs&query=(bioelectric+phenomena%3Cin%3Ede)&pos=15&access=no Modeling the Cellular Level of Natural Sensing with the Functional Basis for the Design of Biomimetic Sensor Technology]
[[/Technical 10| Technical 10]]


[http://www3.interscience.wiley.com/journal/112128336/abstract What are non-thermal electric biological effects?]
[[/Technical 11| Technical 11]]


[http://www.pnas.org/content/106/11/4219.abstract?etoc Fröhlich condensation and their applications to terahertz medicine and quantum consciousness]
[[/Technical 12| Technical 12]]


[http://www.pnas.org/content/106/11/4231.abstract?etoc Spectroscopic studies of position-specific DNA “breathing” fluctuations at replication forks and primer-template junctions]
[[/Technical 13| Technical 13]]


[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=ISBEAT000003000002000077000001&idtype=cvips&gifs=Yes&type=ALERT BioXyce: an engineering platform for the study of cellular systems]
[[/Technical 14| Technical 14]]


[http://www.pnas.org/content/106/10/3692.abstract?etoc Versatile selection technology for intracellular protein–protein interactions mediated by a unique bacterial hitchhiker transport mechanism]
[[/Cell/Systems/Synthetic Biology Methods|Cell/Systems/Synthetic Biology Methods]]


[http://www.pnas.org/content/106/10/3659.abstract?etoc Breakdown of the Debye approximation for the acoustic modes with nanometric wavelengths in glasses]
[[/Sensors|Sensors]]


[http://www.nature.com/nnano/journal/v4/n3/full/nnano.2009.30.html Scanning tunnelling microscopy: Quantum holography for real]
[[/Social|Social]]


[http://www.nature.com/nnano/journal/v4/n3/full/nnano.2009.21.html Molecular magnets: Chemistry brings qubits together]
[[/Social 2|Social 2]]


[http://www.nature.com/nnano/journal/v4/n3/full/nnano.2008.406.html Large voltage-induced magnetic anisotropy change in a few atomic layers of iron]
[[/Social 3|Social 3]]


Very interesting: [http://www.nature.com/nnano/journal/v4/n3/full/nnano.2008.393.html A smart dust biosensor powered by kinesin motors]
[[/Information|Information]]
 
[http://nar.oxfordjournals.org/cgi/content/full/37/4/1288?etoc DNA triplex formation with 5-dimethylaminopropargyl deoxyuridine]
 
[http://nar.oxfordjournals.org/cgi/content/full/37/4/e27?etoc Real-time single-molecule observation of rolling-circle DNA replication]
 
[http://nar.oxfordjournals.org/cgi/content/full/37/4/e28?etoc DNA modification of live cell surface]
 
Very Interesting: [http://nar.oxfordjournals.org/cgi/content/full/37/4/e33?etoc A synthetic mammalian electro-genetic transcription circuit]
 
[http://www.pnas.org/content/106/9/2989.abstract?etoc Micromagnetic selection of aptamers in microfluidic channels]
 
[http://www.pnas.org/content/106/9/3006.abstract?etoc Nanometric chemical clocks]
 
[http://pubs.acs.org/doi/full/10.1021/jo8019829 Structure−Property Relationships of Stable Free Radicals: Verdazyls with Electron-Rich Aryl Substituents]
 
[http://pubs.acs.org/doi/full/10.1021/jo801995f Nanospheres with Polymerization Ability Coated by Polyrotaxane]
 
[http://peds.oxfordjournals.org/cgi/content/full/22/2/53?etoc Evolving Lac repressor for enhanced inducibility]
 
[http://www.pnas.org/content/106/12/4683.abstract?etoc The homology recognition well as an innate property of DNA structure]
 
[http://nar.oxfordjournals.org/cgi/content/full/37/3/e19?etoc Sensitive isothermal detection of nucleic-acid sequence by primer generation–rolling circle amplification]
 
[http://nar.oxfordjournals.org/cgi/content/full/37/3/e20?etoc Sensitive fluorescence detection of nucleic acids based on isothermal circular strand-displacement polymerization reaction]
 
[http://www.pnas.org/content/106/13/5053.abstract?etoc Synthesis of programmable integrases]
 
[http://pubs.acs.org/doi/full/10.1021/jo900375f Electron Relay Race in Peptides]
 
[http://www.nature.com/nnano/journal/v4/n4/full/nnano.2009.12.html Continuous base identification for single-molecule nanopore DNA sequencing]
 
[http://www.pnas.org/content/106/14/5627.abstract?etoc A membrane interferometer]
 
[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WSN-4W03PJK-6&_user=501045&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000022659&_version=1&_urlVersion=0&_userid=501045&md5=d6360f4e112608be1c6202a969d4a104 Systems Biology Strikes Gold]
 
[http://pubs.acs.org/doi/abs/10.1021/cb900028j Amphipathic small molecules mimic the binding mode and function of endogenous transcription factors]
 
[http://www.nature.com/nrmicro/journal/v7/n5/full/nrmicro2056.html Using movies to analyse gene circuit dynamics in single cells]
 
[http://www.pnas.org/content/106/15/6044.abstract?etoc A black body absorber from vertically aligned single-walled carbon nanotubes]
 
[http://www.pnas.org/content/106/15/6111.abstract?etoc Mammalian cell penetration, siRNA transfection, and DNA transfection by supercharged proteins]
 
[http://www.pnas.org/content/106/15/6226.abstract?etoc Activation of antibacterial autophagy by NADPH oxidases]
 
[http://jb.asm.org/cgi/content/abstract/191/9/3041?etoc Pyruvate Kinase-Deficient Escherichia coli Exhibits Increased Plasmid Copy Number and Cyclic AMP Levels]
 
[Excitable waves at the margin of the contact area between a cell and a substrate
Olivier Ali, Marc Block, Corinne Albiges-Rizo and B Fourcade coming out soon!]
 
[http://pubs.acs.org/doi/full/10.1021/bi802289v?cookieSet=1 Designing Protease Sensors for Real-Time Imaging of Trypsin Activation in Pancreatic Cancer Cells]
 
[http://www.pnas.org/content/106/17/6900.abstract?etoc First-principles design of nanomachines]
 
May be sort of communication interface I'm looking for:[http://www.pnas.org/content/106/18/7309.abstract?etoc Flexible electrical recording from cells using nanowire transistor arrays]
 
Maybe sort of physical phenomenon I'm looking for: [http://www.pnas.org/content/106/18/7373.abstract?etoc Electrophysiological characterization of LacY]
 
[http://www.nature.com/nnano/journal/v4/n5/full/nnano.2009.99.html Top down bottom up: Magnetic attraction]
 
[http://www.nature.com/nnano/journal/v4/n5/full/nnano.2009.49.html An electric current spike linked to nanoscale plasticity], Note: if such a transition (or something like it) happened in vivo and could be induced remotely (perhaps via the magnetic tweezers described above), might have a way of determining what's going on in vivo.
 
[http://www.nature.com/nnano/journal/v4/n5/full/nnano.2009.48.html Tunnelling readout of hydrogen-bonding-based recognition], Note: "These effects provide new mechanisms for making sensors that transduce a molecular recognition event into an electronic signal."
 
[http://www.nature.com/nnano/journal/v4/n5/full/nnano.2009.22.html Phonon populations and electrical power dissipation in carbon nanotube transistors]
 
[http://www.nature.com/nnano/journal/v3/n11/full/nnano.2008.328.html Nanoscale magnetometry: Microscopy with single spins]
 
[http://pubs.acs.org/doi/pdfplus/10.1021/bi900511b?cookieSet=1 Magnetic interactions sense changes in distance between heme bL and iron-sulfur cluster in cytochrome bc1]
 
==Technical 2==
 
[http://pubs.acs.org/doi/full/10.1021/nl900423g Precise Semiconductor Nanowire Placement Through Dielectrophoresis]
 
[http://pubs.acs.org/doi/full/10.1021/nl901143p In Vitro and In Vivo Nonlinear Optical Imaging of Silicon Nanowires]
 
[http://pubs.acs.org/doi/full/10.1021/nl900770n Non-Contact Electrical Measurements of Hot and Cold Domains in Silica Dielectric Breakdown]
 
[http://pubs.acs.org/doi/full/10.1021/nl900786u Unidirectional Ultracompact Optical Nanoantennas]
 
[http://pubs.acs.org/doi/full/10.1021/nl901254f Platform for Controlled Supramolecular Nanoassembly]
 
[http://pubs.acs.org/doi/full/10.1021/nl900463u Creation of Individual Vacancies in Carbon Nanotubes by Using an Electron Beam of 1 Å Diameter]
 
[http://pubs.acs.org/doi/full/10.1021/nl900186w Controlled Propulsion of Artificial Magnetic Nanostructured Propellers]
 
[http://www.pnas.org/content/106/19/7702.full Single-nucleotide discrimination in immobilized DNA oligonucleotides with a biological nanopore]
 
[http://www.pnas.org/content/106/19/7816.abstract?etoc Detection of circular polarization in light scattered from photosynthetic microbes]
 
[http://www.ncbi.nlm.nih.gov/pubmed/19443689?ordinalpos=1&itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum Synthesis of orthogonal transcription-translation networks.]
 
[http://pubs.acs.org/doi/pdfplus/10.1021/bi900148t?cookieSet=1 Monitoring the Conformation of Benzo[a]pyrene Adducts in the
Polymerase Active Site using Fluorescence Resonance Energy Transfer]
 
[http://pubs.acs.org/doi/full/10.1021/nl9004332 Quantifying Electric Field Gradient Fluctuations over Polymers Using Ultrasensitive Cantilevers]
 
[http://pubs.acs.org/doi/full/10.1021/nl900786u Unidirectional Ultracompact Optical Nanoantennas]
 
[http://www.pnas.org/content/106/20/8204.abstract?etoc Facilitated diffusion with DNA coiling]
 
[http://www.nature.com/nrm/journal/v10/n6/full/nrm2698.html The second wave of synthetic biology: from modules to systems]
 
Very interesting: [http://pubs.acs.org/doi/full/10.1021/nl803757u Formation of Ordered Cellular Structures in Suspension via Label-Free Negative Magnetophoresis]
 
[http://pubs.acs.org/doi/full/10.1021/nl8037695 Turning Charge Transfer On and Off in a Molecular Interferometer with Vibronic Pathways]
 
[http://pubs.acs.org/doi/full/10.1021/nl8037807 Two-Terminal Nanoelectromechanical Devices Based on Germanium Nanowires]
 
Interesting:[http://pubs.acs.org/doi/full/10.1021/nl803902t Impedance Matching and Emission Properties of Nanoantennas in an Optical Nanocircuit]
 
[http://pubs.acs.org/doi/full/10.1021/nl9001553 Optical Properties of the Crescent-Shaped Nanohole Antenna]
 
[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=INEACX000003000002000046000001&idtype=cvips&gifs=Yes&type=ALERT Localised heating of tumours utilising injectable magnetic nanoparticles for hyperthermia cancer therapy]
 
[http://pubs.acs.org/doi/full/10.1021/nl900900r Fabry-Perot Resonances in One-Dimensional Plasmonic Nanostructures]
 
[http://www.cell.com/biophysj/abstract/S0006-3495(07)71550-3 In Vivo Measurement of Intramolecular Distances Using Genetically Encoded Reporters]
 
[http://www.iop.org/EJ/article/-alert=44812/0022-3727/42/12/122001/d9_12_122001.pdf?request-id=72d7390a-298b-44aa-994e-a8f1555f3d01 Tunable magnetoelectric resonance devices]
 
[http://pubs.acs.org/doi/pdfplus/10.1021/bi9004107 Effects of Recombinant Protein Expression on Green Fluorescent Protein Diffusion in Escherichia coli]
 
[http://www.pnas.org/content/106/23/9131.abstract?etoc Beyond the Fermi liquid paradigm: Hidden Fermi liquids]
 
[http://www.pnas.org/content/106/23/9250.abstract?etoc DNA relaxation dynamics as a probe for the intracellular environment]
 
[http://pubs.acs.org/doi/abs/10.1021/cb700249v Peptide and Protein Building Blocks for Synthetic Biology: From Programming Biomolecules to Self-Organized Biomolecular Systems]
 
[http://pubs.acs.org/doi/full/10.1021/nl901008k Reciprocal DNA Nanomechanical Devices Controlled by the Same Set Strands]
 
[http://pubs.acs.org/doi/full/10.1021/nl9011694 Single-DNA Molecule Nanomotor Regulated by Photons]
 
[http://pubs.acs.org/doi/full/10.1021/nl901265n High-Resolution Structural Analysis of a DNA Nanostructure by cryoEM]
 
[http://www.nature.com/nnano/journal/v4/n6/full/nnano.2009.134.html Quantum dots: When a barrier is not an obstacle]
 
[http://www.pnas.org/content/106/22/8797.extract?etoc Transcriptional pausing without backtracking]
 
[http://www.pnas.org/content/106/22/8811.abstract?etoc Magnetic stabilization and vorticity in submillimeter paramagnetic liquid tubes]
 
[http://www.nature.com/nmeth/journal/v6/n6/full/nmeth0609-404.html Nature's pH meter (I-tetraplex)]
 
==Technical 3==
 
[http://www.springerlink.com/content/543770407247j236/ Genetic aspects of floral fragrance in plants]
 
[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TCW-4MV719J-2&_user=501045&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000022659&_version=1&_urlVersion=0&_userid=501045&md5=681a4c99cdb693c259ccb2091baedb7a Scent engineering: toward the goal of controlling how flowers smell]
 
[http://pubs.acs.org/doi/pdfplus/10.1021/nl900898t Alternating Current Driven Electroluminescence from ZnSe/ZnS:Mn/ZnS Nanocrystals]
 
[http://pubs.acs.org/doi/full/10.1021/nl9012979 Imaging Surface Charges of Individual Biomolecules]
 
[http://pubs.acs.org/doi/full/10.1021/nl901403u Synthetic Proton-Gated Ion Channels via Single Solid-State Nanochannels Modified with Responsive Polymer Brushes]
 
[http://pubs.acs.org/doi/pdfplus/10.1021/bi9007484 The Charge Conduction Properties of a Parallel-Stranded DNA GQuadruplex: Implications for Chromosomal Oxidative Damage]
 
[http://www.iop.org/EJ/article/-alert=44812/0031-9155/54/13/006/pmb9_13_006.pdf?request-id=804e066c-7438-4e97-9be8-a8905e7f708f Generalized model of the microwave auditory effect]
 
[http://pubs.acs.org/doi/full/10.1021/nl9011886 Ordering of the Nanoscale Step Morphology As a Mechanism for Droplet Self-Propulsion]
 
[http://www.pnas.org/content/106/25/10135.abstract?etoc An externally tunable bacterial band-pass filter]
 
[http://www.pnas.org/content/106/25/10153.abstract?etoc Direct single-molecule observation of a protein living in two opposed native structures]
 
[http://www.iop.org/EJ/article/-alert=44812/0022-3727/42/13/132002/d9_13_132002.pdf?request-id=24cf2a13-c8ce-49fa-89af-b52c718dffd3 Evidence of magnetic vortices formation in Mn-based sub-micrometre structures embedded in Si–Mn films]
 
[http://www.iop.org/EJ/article/-alert=44812/0022-3727/42/13/135501/d9_13_135501.pdf?request-id=b464a7e0-4554-4d1b-84a4-1c29c72c749a Oscillating magnetic field-actuated microvalves for micro- and nanofluidics]
 
[http://pubs.acs.org/stoken/beta/select/abs/10.1021/ja7103125 Intracellular Spatial Control of Fluorescent Magnetic Nanoparticles]
 
[http://pubs.acs.org/doi/full/10.1021/nl901208v Surface Phonon Polaritons Mediated Energy Transfer between Nanoscale Gaps]
 
[http://pubs.acs.org/doi/full/10.1021/nl901535m Rapid and Dynamic Intracellular Patterning of Cell-Internalized Magnetic Fluorescent Nanoparticles]
 
[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WBK-4WGMB42-7&_user=501045&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000022659&_version=1&_urlVersion=0&_userid=501045&md5=cfb51abb53ccf9a4dd02d7ecdb323a92 Radiation-induced tetramer-to-dimer transition of Escherichia coli lactose repressor]
 
[http://www.iop.org/EJ/article/-alert=44812/0022-3727/42/14/145109/d9_14_145109.pdf?request-id=d02e2879-d1c7-4fa9-a5ab-b1178f14a908 Current bistability in a weakly coupled multi-quantum well structure: a magnetic field induced ‘memory effect’]
 
[http://www.iop.org/EJ/article/-alert=44812/0022-3727/42/14/145408/d9_14_145408.pdf?request-id=589ec10a-6050-451c-b519-4cbccf7b23df Calculations of the resonant response of carbon nanotubes to binding of DNA]
 
[http://www.pnas.org/content/106/26/10499.abstract?etoc Spiral and target patterns in bivalve nacre manifest a natural excitable medium from layer growth of a biological liquid crystal]
 
[http://www.cnd.mcgill.ca/bios/bub/excitablemain.html Excitable Media]
 
[http://www.pnas.org/content/106/26/10632.abstract?etoc Universal behavior of the osmotically compressed cell and its analogy to the colloidal glass transition]
 
[http://abbs.oxfordjournals.org/cgi/content/abstract/41/7/561?etoc= cDNA microarray reveals the alterations of cytoskeleton-related genes in osteoblast under high magneto-gravitational environment]
 
[http://www.nature.com/nmeth/journal/v6/n7/full/nmeth0709-487.html Will planets reveal the light of their life?]
 
[http://www.nature.com/nmeth/journal/v6/n7/full/nmeth.1336.html Reaching the protein folding speed limit with large, sub-microsecond pressure jumps]
 
[http://www.nature.com/nmeth/journal/v6/n7/full/nmeth0709-490.html Downhill protein folding under pressure]
 
[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=ETNEBJ000004000009000070000001&idtype=cvips&gifs=Yes&type=ALERT Slow down to speed up]
 
[http://www.nature.com/nnano/journal/v4/n7/full/nnano.2009.169.html Nanoelectromechanical systems: Mass spec goes nanomechanical]
 
[http://www.nature.com/nnano/journal/v4/n7/full/nnano.2009.161.html Ferroelectric memory: Slim fast]
 
[http://www.nature.com/nnano/journal/v4/n7/full/nnano.2009.121.html Droplet networks with incorporated protein diodes show collective properties]
 
[http://www.nature.com/nnano/journal/v4/n7/full/nnano.2009.152.html Towards single-molecule nanomechanical mass spectrometry]
 
[http://www.pnas.org/content/106/27/10890.full Locating the transition from periodic oscillations to spatiotemporal chaos in the wake of invasion]
 
[http://www.pnas.org/content/106/27/10999.full Traceless protein splicing utilizing evolved split inteins]
 
[http://www.pnas.org/content/106/27/11183.full Tentacled snakes turn C-starts to their advantage and predict future prey behavior]
 
[http://www.pnas.org/content/106/27/11212.full Programmed loss of millions of base pairs from a vertebrate genome]
 
[http://www.pnas.org/content/106/27/10960.full Mesoscopic atomic entanglement for precision measurements beyond the standard quantum limit]
 
[http://pubs.acs.org/doi/full/10.1021/nl900944y Propulsion of Gold Nanoparticles with Surface Plasmon Polaritons: Evidence of Enhanced Optical Force from Near-Field Coupling between Gold Particle and Gold Film]
 
[http://pubs.acs.org/doi/full/10.1021/bi9007726 Click Chemistry and Bioorthogonal Reactions: Unprecedented Selectivity in the Labeling of Biological Molecules]
 
[http://www.nature.com/nature/journal/v409/n6816/full/409027a0.html Quantum engineering: Squeezing entanglement]
 
[http://www.nature.com/nature/journal/v409/n6816/full/409063a0.html Many-particle entanglement with Bose–Einstein condensates]
 
[http://www.nature.com/nature/journal/v459/n7247/full/459653a.html Quantum mechanics: Entanglement goes mechanical]
 
[http://pubs.acs.org/doi/full/10.1021/nl901554s Thermoelectric Signatures of Coherent Transport in Single-Molecule Heterojunctions]
 
[http://pubs.acs.org/doi/full/10.1021/nl901710n Directed Hybridization and Melting of DNA Linkers using Counterion-Screened Electric Fields]
 
 
<biblio>
#Bor-sen pmid=19435742
#Cantone pmid=19327819
#Carrera pmid=19188257
#Chen pmid=19566953
#Cournac pmid=19257878
#Desai pmid=19264798
#Endler pmid=19364720
#Gibson pmid=19363495
#Haseloff pmid=19493895
#Liu pmid=19191955
#Luisi pmid=17443874
#Matsuoka pmid=19493898
#Minhaz pmid=19343541
#Pedersen pmid=19369220
#Pereira pmid=19263449
#Salis pmid=19494587
#Weber pmid=19190091
</biblio>
 
==Technical 4==
 
[http://www.jbioleng.org/content/pdf/1754-1611-3-11.pdf Solving a Hamiltonian Path Problem with a bacterial computer]
 
[http://nar.oxfordjournals.org/cgi/content/full/37/13/e95?etoc A thermodynamic approach to PCR primer design]
 
[http://www.nature.com/nature/journal/v459/n7247/full/nature08006.html Entangled mechanical oscillators]
 
[http://www.nature.com/news/2008/080430/full/453022a.html Quantum all the way]
 
[http://www.nature.com/nature/journal/v453/n7198/full/4531003a.html Quantum Coherence Insight article]
 
[http://scitation.aip.org/getpdf/servlet/GetPDFServlet?filetype=pdf&id=PHTOAD000058000007000036000001&idtype=cvips&prog=normal Putting Mechanics into Quantum Mechanics]
 
[http://www.nature.com/nature/journal/v429/n6993/full/nature02608.html Deterministic quantum teleportation of atomic qubits]
 
[http://www.sciencemag.org/cgi/reprint/291/5506/1013.pdf A Decoherence-Free Quantum Memory Using Trapped Ions]
 
[http://www.nature.com/nature/journal/v404/n6775/full/404256a0.html Experimental entanglement of four particles]
 
[http://pubs.acs.org/doi/abs/10.1021/bi00346a001 Sequence dependence of the curvature of DNA: a test of the phasing hypothesis]
 
[http://www.pnas.org/content/106/31/12617.abstract?etoc Acoustically driven programmable liquid motion using resonance cavities]
 
Förster resonance energy transfer
 
[http://pubs.acs.org/doi/abs/10.1021/nl901355y?journalCode=nalefd A Nanoelectromechanical Single-Atom Switch]
 
Surface plasmon-polaritons, surface plasmon resonance
 
[http://pubs.acs.org/doi/abs/10.1021/nl9020232?journalCode=nalefd DNA Strands from Denatured Duplexes are Translocated through Engineered Protein Nanopores at Alkaline pH]
 
[http://pubs.acs.org/doi/abs/10.1021/nl901449w?journalCode=nalefd Tuning Nanoelectromechanical Resonators with Mass Migration]
 
[http://pubs.acs.org/doi/abs/10.1021/nl9019819?journalCode=nalefd Micromachined Fabry−Perot Interferometer with Embedded Nanochannels for Nanoscale Fluid Dynamics]
 
[http://pubs.acs.org/doi/pdfplus/10.1021/bi900615z Comparison of the Thermodynamics and Basepair Dynamics of a full LNA:DNA duplex and of the isosequential DNA:DNA duplex]
 
Tribology
 
[http://www.iop.org/EJ/article/-alert=44812/0022-3727/42/16/163001/d9_16_163001.pdf?request-id=144b5695-fefd-43e4-b25e-89f93ecfed2b Plasmas for spacecraft propulsion]
 
[http://www.nature.com/nnano/journal/v4/n8/full/nnano.2009.212.html Scanning tunnelling microscopy: A DNA sequence scanned]
 
[http://www.nature.com/nnano/journal/v4/n8/full/nnano.2009.213.html Microwave sources: Spin-torque oscillators get in phase]
 
[http://www.nature.com/nnano/journal/v4/n8/full/nnano.2009.192.html Damping of acoustic vibrations in gold nanoparticles]
 
[http://www.nature.com/nnano/journal/v4/n8/full/nnano.2009.177.html Measurement of the quantum capacitance of graphene]
 
[http://www.nature.com/nnano/journal/v4/n8/full/nnano.2009.155.html Partial sequencing of a single DNA molecule with a scanning tunnelling microscope]
 
[http://www.iop.org/EJ/article/-alert=44812/0031-9155/54/16/011/pmb9_16_011.pdf?request-id=7f8b14b2-be6a-4e27-b3e6-d1fcd07b9aa4
The low-energy ion range in DNA]
 
[http://www.nature.com/nbt/journal/v27/n8/full/nbt0809-729.html Metabolic engineering without plasmids]
 
[http://pubs.acs.org/doi/full/10.1021/nl9015705 Triggering Enzymatic Activity with Force] (Global enzymatic control mechanism?)
 
[http://pubs.acs.org/doi/full/10.1021/nl901057c Parametric Nanomechanical Amplification at Very High Frequency]
 
[http://pubs.acs.org/doi/abs/10.1021/nl803717g?journalCode=nalefd Exciton-Plasmon States in Nanoscale Materials: Breakdown of the Tamm−Dancoff Approximation]
 
[http://www.pnas.org/content/106/33/13780.abstract?etoc Bioelectronic silicon nanowire devices using functional membrane proteins]
 
[http://www.nature.com/nrm/journal/v10/n9/full/nrm2746.html Biology under construction: in vitro reconstitution of cellular function]
 
 
 
 
<biblio>
#Buechner pmid=19669418
#Gaisser pmid=19636305
#Morange pmid=19636306
#Schwille pmid=19635039
#Stein pmid=19617373
</biblio>
 
==Technical 5==
 
[http://www.iop.org/EJ/article/-alert=44812/0022-3727/42/17/175205/d9_17_175205.pdf?request-id=a351a181-d952-4b7f-bb48-c252995a7cfb Thermal and power characteristics of plasma torch with reverse vortex]
 
[http://www.iop.org/EJ/article/-alert=44812/1478-3975/6/3/036009/ph9_3_036009.pdf?request-id=60fe0e10-3b78-48af-ab66-56c4581492ae Frustrated bistability as a means to engineer oscillations in biological systems]
 
[http://www.iop.org/EJ/article/-alert=44812/1478-3975/6/3/036012/ph9_3_036012.pdf?request-id=ff0f0622-706d-4fd1-8308-ede211dd76be Physical signals for protein–DNA recognition]
 
[http://www.pnas.org/content/106/34/14201.abstract?etoc Engineering of bio-hybrid materials by electrospinning polymer-microbe fibers]
 
==Social==
 
[http://www.nature.com/nnano/journal/v4/n2/full/nnano.2009.419.html Getting to Know the Public]
 
[http://www.nature.com/nnano/journal/v4/n2/abs/nnano.2008.361.html?lang=en Religious beliefs and public attitudes toward nanotechnology in Europe and the United States]
 
[http://www.nature.com/nnano/journal/v4/n2/abs/nnano.2008.362.html?lang=en Deliberating the risks of nanotechnologies for energy and health applications in the United States and United Kingdom]
 
[http://jiplp.oxfordjournals.org/cgi/content/abstract/4/4/267?etoc= The legacy of Myriad for gene-based diagnostics: a new policy and regulatory option]
 
[http://jiplp.oxfordjournals.org/cgi/content/abstract/4/4/289?etoc= Patents on genes, usefulness, and the requirement of industrial application]
 
[http://www.nature.com/nbt/journal/v27/n3/full/nbt0309-214a.html Vatican Cheers GM]
 
[http://www.nature.com/nbt/journal/v27/n3/full/nbt0309-234.html Proliferation-resistant biotechnology: an approach to improve biological security]
 
[http://www.nature.com/nbt/journal/v27/n3/full/nbt0309-237.html Biotech under Barack]
 
[http://www.nature.com/nnano/journal/v4/n3/full/nnano.2009.16.html Hearts and minds and nanotechnology]
 
[http://www.nature.com/nmeth/journal/v6/n3/full/nmeth0309-181.html Lines of communication]
 
[http://www.nature.com/bioent/2009/090501/full/bioe.2009.5.html Six secrets to success—how to build a sustainable biotech business]
 
[http://www.nature.com/bioent/2003/030601/full/bioent740.html The habits of successful bioentrepreneurs]
 
[http://www.nature.com/nbt/journal/v27/n6/full/nbt0609-531.html Wasting cash—the decline of the British biotech sector]
 
[http://openwetware.org/index.php?title=Matt_Gethers/Articles_to_Read&action=edit&section=6 Bio-art: the ethics behind the aesthetics]
 
[http://www.nature.com/nbt/journal/v20/n6s/full/nbt0602supp-BE13.html Merlin's maestro]
 
[http://www.nature.com/bioent/2009/090601/full/bioe.2009.6.html Building today's platform company]
 
[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=ETNEBJ000004000012000083000001&idtype=cvips&gifs=Yes&type=ALERT The eccentric engineer (al-Jazari)]
 
[http://www.nature.com/ngeo/journal/v2/n8/full/ngeo585.html Acts of God?]
 
[http://www.nature.com/bioent/2003/030101/full/nbt0601supp_BE9.html Adventures in wonderland]
 
[http://www.nature.com/bioent/2009/090701/full/bioe.2009.7.html Playing to win (Business Plan Competitions)]
 
[http://www.nature.com/nsmb/journal/v16/n8/full/nsmb0809-797.html A different perspective on science]
 
[http://www.nature.com/nnano/journal/v4/n8/full/nnano.2009.205.html Essential features for proactive risk management]
 
[http://www.nature.com/nnano/journal/v4/n8/full/nnano.2009.208.html Designs for living]
 
[http://www.nature.com/nbt/journal/v27/n8/full/nbt0809-675.html A blueprint for biotech's blues]
 
[http://www.nature.com/nbt/journal/v27/n8/full/nbt0809-682b.html GM fish ice cream]
 
[http://www.nature.com/nbt/journal/v27/n8/full/nbt0809-705.html Beyond the biotech IPO: a brave new world]
 
 
 
 
 
 
<biblio>
#Yearley pmid=19447816
</biblio>


==Searches==
==Searches==
Line 546: Line 102:


"Antenna Theory"
"Antenna Theory"
"Electrostatic/electrical properties of cells"
Search Terms from Abshire Paper:
cell viability, biolabs-on-a-chip, cell monitoring, CMOS biosensors, cell clinics, CMOS/MEMS hybrid microsystems, living cells, integrated sensors, extracellular signal amplification, cell-substrate capacitance sensing, contact imaging, fluorescence detection, bio-amplifier, extracellular potentials, electrically active cells, capacitance sensor, cell adhesion

Latest revision as of 15:59, 25 July 2011

Articles to Read

Potential Grad Work

Favorite Journals

Nature Nanotechnology (Has categories)

Biochemistry

Journal of Biological Engineering

Journal of Chemical Biology

Biotechnology and Bioengineering

Bioelectromagnetics

Physical Biology

NanoLetters

IET Nanobiotechnology

Biophysical Journal

Review of Scientific Instruments

Nanobioscience, IEEE Transactions on

Nanobiotechnology, IET

Nanotechnology, IEEE Transactions on

Biosensors and Bioelectronics (Search DNA + in vivo)

IEEE Sensors Journal

Sensor Review

Analytical Chemistry

Analytical Biochemistry

Analytical Methods

Science and Engineering Ethics

Key word: telemetry

Articles

Technical 1

Technical 2

Technical 3

Technical 4

Technical 5

Technical 6

Technical 7

Technical 8

Technical 9

Technical 10

Technical 11

Technical 12

Technical 13

Technical 14

Cell/Systems/Synthetic Biology Methods

Sensors

Social

Social 2

Social 3

Information

Searches

"In vivo sensor/sensing"

"In vivo instrumentation"

"Smallest antenna"

"Molecular antenna"

"Antenna Theory"

"Electrostatic/electrical properties of cells"

Search Terms from Abshire Paper:

cell viability, biolabs-on-a-chip, cell monitoring, CMOS biosensors, cell clinics, CMOS/MEMS hybrid microsystems, living cells, integrated sensors, extracellular signal amplification, cell-substrate capacitance sensing, contact imaging, fluorescence detection, bio-amplifier, extracellular potentials, electrically active cells, capacitance sensor, cell adhesion

Retrieved from "https://openwetware.org/mediawiki/index.php?title=Matt_Gethers/Articles_to_Read&oldid=525859"