Matthew K. Oki Individual Journal 4
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Purpose
Methods & Results
- The formal methods were followed from Activity 2 of the Exploring HIV Evolution
Activity 2, Part 1
- Download the provided sequences of subjects 10-15 from BIOL368/F16:Week 4
- Upload these sequences into the Biology Workbench
- Run the multiple sequence alignment for the selected subjects and clones
- The subjects & clones below were used:
- The output results in the following uprooted tree:
Activity 2, Part 2
- Three individual subjects were run through multiple sequence alignment
- Each nucleotide difference (S) was denoted by the absence of a star as shown below:
- Theta was then calculated
- Theta is...
- Min and Max difference were calculated
Scientific Conclusion
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My Home Page: Matthew K. Oki
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