McMahon Lab:Publications

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Publications

1. J. Flowers, S. He, N. Ivanova, S. Yilmaz, D. R. Noguera, K. D. McMahon (200_) "Denitrification capabilities of two enhanced biological phosphorus removal sludges dominated by different 'Candidatus Accumulibacter' clades" In review.
   
   
2. S. E. Jones, K. D. McMahon (200_) "Species sorting may explain an apparent minimal effect of immigration on freshwater bacterial communities" In revision.
   
   
3. S. He, V. Kunin, M. Haynes, H. Garcia Martin, N. Ivanova, F. Rohwer, P. Hugenholtz, K. D. McMahon. "Metatranscriptomic array analysis of Candidatus Accumulibacter phosphatis-enriched enhanced biological phosphorus removal sludge." In revision.
   
   
4. E. E. Seyfried, R. J. Newton, K. F. Rubert IV, J. A. Pedersen, K. D. McMahon. (200_) "Tetracycline resistance genes in aquaculture facilities with varying use of oxytetracycline" In revision.
   
   
5. I. S. Gil, W. Sheldon, T. Schmidt, M. Servilla, R. Aguilar, C. Gries, T. Gray, D. Field, J. Cole, J. Y. Pan, G. Palanisamy, D. Henshaw, M. O'Brien, L. Kinkel, K. McMahon, R. Kottman, J. Brunt, W. Michener. (2008) "Defining linkages between the GSC and NSF's LTER program: how does the ecological metadata language relate to GCDML and other outcomes" OMICS: A journal of Integrative Biology, 12(2):151-156.
   
   
6. S. Brook Peterson, F. Warnecke, J. Madejska, K. D. McMahon, P. Hugenholtz. (2008) "Environmental distribution and population biology of Candidatus Accumulibacter, a primary agent of biological phosphorus removal." Environmental Microbiology, 10(10):2692-2703.
   
   
7. G. T. Hinckley, K. D. McMahon, D. McKenzie, J. M. Aiken, C. H. Benson, J. A. Pedersen. (2008) "Survival of pathological prion protein during simulated wastewater treatment processes." Environmental Science and Technology, 42(14):5254-5259.
   
   
8. S. E. Jones, T. K. Kratz, C.-Y. Chiu, K. D. McMahon (200_) “Typhoon disturbance patterns drive annual CO2 flux to the atmosphere from a sub-tropical, humic lake." Global Change Biology, In press.
   
   
9. A. Shade, S. E. Jones, K. D. McMahon. (2008) "The influence of habitat heterogeneity on freshwater bacterial community composition and dynamics." Environmental Microbiology, 10(4):1057-1067.
   
   
10. S. E. Jones, R. J. Newton, K. D. McMahon. (2008) "Potential for atmospheric deposition of bacteria to influence bacterioplankton communities." FEMS Microbiology Ecology, 64:388-394.
    
    
11. C.-Y. Chiu, S. E. Jones, T. K. Kratz, J.-T. Wu, A. Shade, K. D. McMahon. (2008) "Typhoons initiate predictable change in aquatic bacterial communities" Limnology and Oceanography, 53:1319-1326.
    
    
12. R. J. Newton, S. E. Jones, M. R. Helmus, K. D. McMahon (2007) “The phylogenetic ecology of the freshwater acI lineage.” Applied and Environmental Microbiology, 73(22):7169-7176.
    
    
13. V. Kunin, S. He. F. Warnecke, S. B. Peterson, H. Garcia Martin, M. Haynes, N. Ivanova, L. L. Blackall, M. Breitbart, Forest Rohwer, K. D. McMahon, P. Hugenholtz. (2008) “A bacterial metapopulation adapts locally to phage predation despite global dispersal” Genome Research, 18:293-297.
    
    
14. S. He, A. Z. Gu, K. D. McMahon. (2008) “Progress towards understanding the distribution of Accumulibacter among full-scale enhanced biological phosphorus removal systems” Microbial Ecology, 55(2):229-236.
    
    

#S. He, D. L. Gall, K. D. McMahon. (2007) "Accumulibacter population structure in enhanced biological phosphorus removal sludges revealed by polyphosphate kinase genes." [http://aem.asm.org/cgi/content/abstract/73/18/5865 Applied and Environmental Microbiology, 73(18):5865-5874.</a>

#K. D. McMahon, S. Yilmaz, S. He, D. L. Gall, D. Jenkins, J. D. Keasling. (2007) "Polyphosphate kinase genes from full-scale activated sludge plants" [http://www.springerlink.com/content/b40x18r6366v2086/?p=e3e580f29eca47279f1b22d3d6de0a3b&pi=17 Applied Microbiology and Biotechnology, 77(1):167-173.</a>

#K. D. McMahon, H. Garcia Martin, P. Hugenholtz. (2007) "Integrating ecology into biotechnology" [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRV-4NRMD5D-1&_user=443835&_coverDate=06%2F30%2F2007&_rdoc=19&_fmt=high&_orig=browse&_srch=doc-info(%23toc%236244%232007%23999819996%23660562%23FLA%23display%23Volume)&_cdi=6244&_sort=d&_docanchor=&_ct=19&_acct=C000020958&_version=1&_urlVersion=0&_userid=443835&md5=2cccd5dd8e4be40833fb076a8cef8ad2 Current Opinion in Biotechnology. 18(3):287-292.</a>

#A. D. Kent, A. C. Yannarell, J. A. Rusak, E. W. Triplett, K. D. McMahon. (2007) "Synchrony in aquatic microbial communities" [http://www.nature.com/ismej/journal/v1/n1/abs/ismej20076a.html The ISME Journal: 1:38-47.</a>

#S. R. Carpenter, B. J. Benson, R. Biggs, J. W. Chipman, J. A. Foley, S.A. Golding, R.B. Hammer, P. C. Hanson, P. T. J. Johnson, A. M. Kamarainen, T. K. Kratz, R. C. Lathrop, K. D. McMahon, B. Provencher, J. A. Rusak, C. T. Solomon, E. H. Stanley, M.G. Turner, M. J. Vander Zanden, C.-H. Wu and H. Yuan. (2007). “Understanding regional change:  Comparison of two lake districts.” [http://www.bioone.org/perlserv/?request=get-abstract&doi=10.1641%2FB570407 BioScience 57:323-335.</a>

#E. A. Auerbach, E. E. Seyfried, K. D. McMahon. (2007) "Tetracycline resistance genes in activated sludge wastewater treatment plants" [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V73-4MVN005-2&_user=443835&_coverDate=03%2F31%2F2007&_rdoc=23&_fmt=high&_orig=browse&_srch=doc-info(%23toc%235831%232007%23999589994%23643918%23FLA%23display%23Volume)&_cdi=5831&_sort=d&_docanchor=&_ct=26&_acct=C000020958&_version=1&_urlVersion=0&_userid=443835&md5=9ff60c46b0e74bcf50b12fd804bfa8d7 Water Research. 41:1143-1151.</a>

#S. E. Jones, A. L. Shade, K. D. McMahon, A. D. Kent. (2007) "Comparison of primer sets for use in automated ribosomal intergenic spacer analysis (ARISA) of aquatic bacterial communities: An ecological perspective" [http://aem.asm.org/cgi/content/abstract/73/2/659 Applied and Environmental Microbiology 73(2):659-662.</a>

#A. Shade, A. D. Kent, S. E. Jones, R. J. Newton, E. W. Triplett, K. D. McMahon. (2007) “Inter-annual dynamics and phenology of bacterial communities in a eutrophic lake.” Limnology and Oceanography [http://www.aslo.org/lo/toc/vol_52/issue_2/0487.html 52(2):487-494.</a>

#T. C. Balser, K. D. McMahon, D. Bronson, D. R. Coyle, N. Craig, M. L. Flores-Mangual, K. Forshay, S. E. Jones, A. D. Kent, A. L. Shade (2006). “Bridging the gap between micro- and macro-scale perspectives on ecosystem response to disturbance” [http://www.springerlink.com/content/w412456v8r07u83n/?p=171f0ed1533944718f982a0f0b0e8ccc&pi=0 Plant and Soil, 289(1-2):59-70</a>.

#H. Garcia Martin, N. Ivanova, V. Kunin, F. Warnecke, K. Barry, A. C. McHardy, C. Yeates, S. He, A. Salamov, E. Szeto, E. Dalin, N. Putnam, H. J. Shapiro, J. L. Pangilinan, I. Rigoutsos, N. C. Kyrpides, L. L. Blackall, K. D. McMahon, P. Hugenholtz. (2006) "Metagenomic analysis of phosphorus removing sludge communities." [http://www.nature.com/nbt/journal/v24/n10/abs/nbt1247.html Nature Biotechnology, 24:1263-1269</a>.

#J. A. Pedersen, K. D. McMahon, C. H. Benson. (2006) "Prions: Novel pathogens of environmental concern?" [http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=JOEEDU000132000009000967000001&idtype=cvips&gifs=yes Journal of Environmental Engineering, 132(9):967-969.</a>

#A. D. Kent, S. E. Jones, G. H. Lauster, J. M Graham, R. J. Newton, K. D. McMahon. (2006) "Experimental manipulations of microbial food web interactions in a humic lake: shifting drivers of bacterial community structure" [http://www.blackwell-synergy.com/doi/abs/10.1111/j.1462-2920.2006.01039.x Environmental Microbiology, 8(8):1448-1459</a>.

#R. J. Newton, A.D. Kent, E.W. Triplett, and K.D. McMahon. (2006) "Microbial community dynamics in a humic lake: differential persistence of common freshwater phylotypes" [http://www.blackwell-synergy.com/doi/abs/10.1111/j.1462-2920.2005.00979.x Environmental Microbiology, 8(6):956-970</a>.

#. He, A. Gu, K. D. McMahon (2006) "Fine-scale differences between Accumulibacter-like bacteria in enhanced biological phosphorus removal activated sludge." [http://www.iwaponline.com/wst/05401/wst054010111.htm Water Science and Technology, 54(1):111-117</a>.

#K. D. McMahon, D. Zheng, A. J. M. Stams, D. Boone, R. I. Mackie and L. Raskin. (2004) "Microbial Population Dynamics During Startup and Overload Conditions of Anaerobic Digesters Treating Municipal Solid Waste and Sewage Sludge." [http://www3.interscience.wiley.com/cgi-bin/abstract/109596164/ABSTRACT Biotechnology and Bioengineering, 87(7):823-834</a>.

#K. D. McMahon, M. D. Dojka, N. R. Pace, D. Jenkins, J. D. Keasling. (2002) "Polyphosphate kinase from activated sludge performing enhanced biological phosphorus removal." [http://aem.asm.org/cgi/content/abstract/68/10/4971 Applied and Environmental Microbiology. 68 (10):4971-4978</a>.

#K. D. McMahon, D. Jenkins, J. D. Keasling. (2002) "Polyphosphate kinase genes from activated sludge carrying out enhanced biological phosphorus removal" [http://www.iwaponline.com/wst/04601/wst046010155.htm Water Science and Technology, 46 (1-2):155-162</a>.

#N. Renninger, K. D. McMahon, R. Knopp, H. Nitsche, D. S. Clark, and J. D. Keasling. (2002) "Uranyl precipitation by biomass from an enhanced biological removal reactor" [http://www.kluweronline.com/issn/0923-9820 Biodegradation, 12:401-410.