Mdoyle Week 9: Difference between revisions
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'''Compare with buddy:''' My partner got different terms again, I assume due to the fact that several changes have been made between the old and new versions of the gene database. | '''Compare with buddy:''' My partner got different terms again, I assume due to the fact that several changes have been made between the old and new versions of the gene database. | ||
The GO term I chose was '''VCA0583''', and the expression of the gene appeared to have increased fairly significantly. | The GO term I chose was '''VCA0583''', and the expression of the gene appeared to have increased fairly significantly. The function of the gene is that it is involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. It also displays a binding preference for lysophospholipids | ||
[[Category:BIOL367/F10]] | [[Category:BIOL367/F10]] |
Revision as of 18:47, 26 October 2010
Assignment Page
BIOL367/F10:GenMAPP and MAPPFinder Protocols
Electronic Lab Notebook
Top 10 GO Terms:
- hexose catabolic process
- glucose catabolic process
- glycolysis
- monosaccharide catabolic process
- cytoplasm
- alcohol catabolic process
- cellular carbohydrate catabloic process
- glucose metabolic process
- protein folding
- hexose metabolic process
Compare with a buddy: Salomon's terms were different from mine, because of the changes made to the newer version of the gene database that I was using.
VC0028
- branched chain family amino acid biosynthetic process
- cellular amino acid biosynthetic process
- metabolic process
- metal ion binding
- iron-sulfur cluster binding
- 4 iron, 4 sulfur cluster binding
- catalytic activity
- lyase activity
- dihydroxy-acid dehydratase activity
VC0941
- glycine metabolic process
- L-serine metabolic process
- one-carbon metabolic process
- cytoplasm
- pyridoxal phosphate binding
- transferase activity
- glycine hydroxymethyltransferase activity
VC0869
- glutamine metabolic process
- purine nucleotide biosynthetic process
- 'de novo' IMP biosynthetic process
- cytoplasm
- nucleotide binding
- ATP binding
- catalytic activity
- ligase activity
- phosphoribosylformylglycinamidine synthase activity
VC0051
- purine nucleotide biosynthetic process
- 'de novo' IMP biosynthetic process
- nucleotide binding
- ATP binding
- catalytic activity
- lyase activity
- carboxy-lyase activity
- phosophoribosylaminoimidazole carboxylase activity
VC0647
- mRNA catabolic process
- RNA processing
- cytoplasm
- mitochondrion
- RNA binding
- 3'-5'-exoribonuclease activity
- transferase activity
- nucleotidyltransferase activity
- polyribonucleotide nucleotidyltransferase activity
VC0468
- glutathione biosynthetic process
- metal ion binding
- nucleotide binding
- ATP binding
- catalytic activity
- ligase activity
- glutathione synthase activity
VC2350
- deoxyribonucleotide catabolic process
- metabolic process
- cytoplasm
- catalytic activity
- lyase activity
- deoxyribose-phosphate aldolase activity
VCA0583
- transport
- outer membrane-bound periplasmic space
- transporter activity
Compare with buddy: My partner got different terms again, I assume due to the fact that several changes have been made between the old and new versions of the gene database.
The GO term I chose was VCA0583, and the expression of the gene appeared to have increased fairly significantly. The function of the gene is that it is involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. It also displays a binding preference for lysophospholipids