Mdoyle Week 9: Difference between revisions
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#outer membrane-bound periplasmic space | #outer membrane-bound periplasmic space | ||
#transporter activity | #transporter activity | ||
'''Compare with buddy:''' My partner got different terms again, I assume due to the fact that several changes have been made between the old and new versions of the gene database. | |||
The GO term I chose was '''VCA0583''', and the expression of the gene appeared to have increased fairly significantly. | |||
[[Category:BIOL367/F10]] | [[Category:BIOL367/F10]] |
Revision as of 18:46, 26 October 2010
Assignment Page
BIOL367/F10:GenMAPP and MAPPFinder Protocols
Electronic Lab Notebook
Top 10 GO Terms:
- hexose catabolic process
- glucose catabolic process
- glycolysis
- monosaccharide catabolic process
- cytoplasm
- alcohol catabolic process
- cellular carbohydrate catabloic process
- glucose metabolic process
- protein folding
- hexose metabolic process
Compare with a buddy: Salomon's terms were different from mine, because of the changes made to the newer version of the gene database that I was using.
VC0028
- branched chain family amino acid biosynthetic process
- cellular amino acid biosynthetic process
- metabolic process
- metal ion binding
- iron-sulfur cluster binding
- 4 iron, 4 sulfur cluster binding
- catalytic activity
- lyase activity
- dihydroxy-acid dehydratase activity
VC0941
- glycine metabolic process
- L-serine metabolic process
- one-carbon metabolic process
- cytoplasm
- pyridoxal phosphate binding
- transferase activity
- glycine hydroxymethyltransferase activity
VC0869
- glutamine metabolic process
- purine nucleotide biosynthetic process
- 'de novo' IMP biosynthetic process
- cytoplasm
- nucleotide binding
- ATP binding
- catalytic activity
- ligase activity
- phosphoribosylformylglycinamidine synthase activity
VC0051
- purine nucleotide biosynthetic process
- 'de novo' IMP biosynthetic process
- nucleotide binding
- ATP binding
- catalytic activity
- lyase activity
- carboxy-lyase activity
- phosophoribosylaminoimidazole carboxylase activity
VC0647
- mRNA catabolic process
- RNA processing
- cytoplasm
- mitochondrion
- RNA binding
- 3'-5'-exoribonuclease activity
- transferase activity
- nucleotidyltransferase activity
- polyribonucleotide nucleotidyltransferase activity
VC0468
- glutathione biosynthetic process
- metal ion binding
- nucleotide binding
- ATP binding
- catalytic activity
- ligase activity
- glutathione synthase activity
VC2350
- deoxyribonucleotide catabolic process
- metabolic process
- cytoplasm
- catalytic activity
- lyase activity
- deoxyribose-phosphate aldolase activity
VCA0583
- transport
- outer membrane-bound periplasmic space
- transporter activity
Compare with buddy: My partner got different terms again, I assume due to the fact that several changes have been made between the old and new versions of the gene database.
The GO term I chose was VCA0583, and the expression of the gene appeared to have increased fairly significantly.