Mesoplasma florum:Codon usage

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Line 21: Line 21:
|0.06
|0.06
|.15
|.15
-
|
+
|.12
|-
|-
|Gly
|Gly
Line 29: Line 29:
|0.43
|0.43
|.11
|.11
-
|
+
|.26
|-
|-
|Gly
|Gly
Line 37: Line 37:
|0.47
|0.47
|.34
|.34
-
|
+
|.49
|-
|-
|Gly
|Gly
Line 45: Line 45:
|0.03
|0.03
|.40
|.40
-
|
+
|.13
|-
|-
|Glu
|Glu
Line 53: Line 53:
|0.09
|0.09
|.31
|.31
-
|
+
|.17
|-
|-
|Glu
|Glu
Line 61: Line 61:
|0.91
|0.91
|.69
|.69
-
|
+
|.83
|-
|-
|Asp
|Asp
Line 69: Line 69:
|0.83
|0.83
|.63
|.63
-
|
+
|.74
|-
|-
|Asp
|Asp
Line 77: Line 77:
|0.17
|0.17
|.37
|.37
-
|
+
|.26
|-
|-
|Val
|Val
Line 85: Line 85:
|0.04
|0.04
|.37
|.37
-
|
+
|.15
|-
|-
|Val
|Val
Line 93: Line 93:
|0.28
|0.28
|.15
|.15
-
|
+
|.25
|-
|-
|Val
|Val
Line 101: Line 101:
|0.65
|0.65
|.26
|.26
-
|
+
|.52
|-
|-
|Val
|Val
Line 109: Line 109:
|0.02
|0.02
|.22
|.22
-
|
+
|.08
|-
|-
|Ala
|Ala
Line 117: Line 117:
|0.04
|0.04
|.36
|.36
-
|
+
|.15
|-
|-
|Ala
|Ala
Line 125: Line 125:
|0.46
|0.46
|.21
|.21
-
|
+
|.38
|-
|-
|Ala
|Ala
Line 133: Line 133:
|0.47
|0.47
|.16
|.16
-
|
+
|.34
|-
|-
|Ala
|Ala
Line 141: Line 141:
|0.04
|0.04
|.27
|.27
-
|
+
|.13
|-
|-
|Arg
|Arg
Line 149: Line 149:
|0.03
|0.03
|.02
|.02
-
|
+
|.05
|-
|-
|Arg
|Arg
Line 157: Line 157:
|0.80
|0.80
|.04
|.04
-
|
+
|.33
|-
|-
|Ser
|Ser
Line 165: Line 165:
|0.23
|0.23
|.15
|.15
-
|
+
|.23
|-
|-
|Ser
|Ser
Line 173: Line 173:
|0.06
|0.06
|.28
|.28
-
|
+
|.16
|-
|-
|Lys
|Lys
Line 181: Line 181:
|0.09
|0.09
|.23
|.23
-
|
+
|.15
|-
|-
|Lys
|Lys
Line 189: Line 189:
|0.91
|0.91
|.77
|.77
-
|
+
|.85
|-
|-
|Asn
|Asn
Line 197: Line 197:
|0.77
|0.77
|.45
|.45
-
|
+
|.62
|-
|-
|Asn  
|Asn  
Line 205: Line 205:
|0.23
|0.23
|.55
|.55
-
|
+
|.38
|-
|-
|Met
|Met
Line 213: Line 213:
|1.00
|1.00
|1.00
|1.00
-
|
+
|1.00
|-
|-
|Ile
|Ile
Line 221: Line 221:
|0.32
|0.32
|.07
|.07
-
|
+
|.17
|-
|-
|Ile
|Ile
Line 229: Line 229:
|0.60
|0.60
|.51
|.51
-
|
+
|.62
|-
|-
|Ile
|Ile
Line 237: Line 237:
|0.08
|0.08
|.42
|.42
-
|
+
|.21
|-  
|-  
|Thr
|Thr
Line 245: Line 245:
|0.02
|0.02
|.27
|.27
-
|
+
|.10
|-
|-
|Thr
|Thr
Line 253: Line 253:
|0.55
|0.55
|.13
|.13
-
|
+
|.38
|-
|-
|Thr
|Thr
Line 261: Line 261:
|0.42
|0.42
|.17
|.17
-
|
+
|.38
|-
|-
|Thr
|Thr
Line 269: Line 269:
|0.02
|0.02
|.44
|.44
-
|
+
|.14
|-
|-
|Trp
|Trp
Line 277: Line 277:
|0.04
|0.04
|1.00
|1.00
-
|
+
|1.00
|-
|-
|Trp
|Trp
Line 285: Line 285:
|0.96
|0.96
|0.0
|0.0
-
|
+
|0.0
|-
|-
|Cys
|Cys
Line 293: Line 293:
|0.85
|0.85
|.45
|.45
-
|
+
|.68
|-
|-
|Cys
|Cys
Line 301: Line 301:
|0.15
|0.15
|.55
|.55
-
|
+
|.32
|-
|-
|End
|End
Line 309: Line 309:
|0.19
|0.19
|.07
|.07
-
|
+
|.14
|-
|-
|End
|End
Line 317: Line 317:
|0.81
|0.81
|.64
|.64
-
|
+
|.86
|-
|-
|Tyr
|Tyr
Line 325: Line 325:
|0.78
|0.78
|.57
|.57
-
|
+
|.68
|-
|-
|Tyr
|Tyr
Line 333: Line 333:
|0.22
|0.22
|.43
|.43
-
|
+
|.32
|-
|-
|Leu
|Leu
Line 341: Line 341:
|0.08
|0.08
|.13
|.13
-
|
+
|.16
|-
|-
|Leu
|Leu
Line 349: Line 349:
|0.71
|0.71
|.13
|.13
-
|
+
|.49
|-
|-
|Phe
|Phe
Line 357: Line 357:
|0.81
|0.81
|.57
|.57
-
|
+
|.70
|-
|-
|Phe
|Phe
Line 365: Line 365:
|0.19
|0.19
|.43
|.43
-
|
+
|.30
|-  
|-  
|Ser
|Ser
Line 373: Line 373:
|0.01
|0.01
|.16
|.16
-
|
+
|.05
|-
|-
|Ser
|Ser
Line 381: Line 381:
|0.46
|0.46
|.12
|.12
-
|
+
|.29
|-
|-
|Ser
|Ser
Line 389: Line 389:
|0.22
|0.22
|.15
|.15
-
|
+
|.22
|-
|-
|Ser
|Ser
Line 397: Line 397:
|0.01
|0.01
|.15
|.15
-
|
+
|.05
|-
|-
|Arg
|Arg
Line 405: Line 405:
|0.00
|0.00
|.10
|.10
-
|
+
|0.0
|-
|-
|Arg
|Arg
Line 413: Line 413:
|0.02
|0.02
|.06
|.06
-
|
+
|.06
|-
|-
|Arg
|Arg
Line 421: Line 421:
|0.15
|0.15
|.38
|.38
-
|
+
|.44
|-
|-
|Arg
|Arg
Line 429: Line 429:
|0.01
|0.01
|.40
|.40
-
|
+
|.12
|-
|-
|Gln
|Gln
Line 437: Line 437:
|0.05
|0.05
|.65
|.65
-
|
+
|.24
|-
|-
|Gln
|Gln
Line 445: Line 445:
|0.95
|0.95
|.35
|.35
-
|
+
|.76
|-
|-
|His
|His
Line 453: Line 453:
|0.73
|0.73
|.57
|.57
-
|
+
|.65
|-
|-
|His
|His
Line 461: Line 461:
|0.27
|0.27
|.43
|.43
-
|
+
|.35
|-  
|-  
|Leu
|Leu
Line 469: Line 469:
|0.01
|0.01
|.50
|.50
-
|
+
|.11
|-
|-
|Leu
|Leu
Line 477: Line 477:
|0.08
|0.08
|.04
|.04
-
|
+
|.08
|-
|-
|Leu
|Leu
Line 485: Line 485:
|0.12
|0.12
|.10
|.10
-
|
+
|.17
|-
|-
|Leu
|Leu
Line 493: Line 493:
|0.00
|0.00
|.10
|.10
-
|
+
|0.0
|-
|-
|Pro
|Pro
Line 501: Line 501:
|0.03
|0.03
|.52
|.52
-
|
+
|.16
|-
|-
|Pro
|Pro
Line 509: Line 509:
|0.57
|0.57
|.19
|.19
-
|
+
|.44
|-
|-
|Pro
|Pro
Line 517: Line 517:
|0.37
|0.37
|.16
|.16
-
|
+
|.32
|-
|-
|Pro
|Pro
Line 525: Line 525:
|0.03
|0.03
|.12
|.12
-
|
+
|.08
|-
|-
|}
|}

Revision as of 22:22, 2 March 2007

The codon usage table for Mesoplasma florum is here:

Mesoplasma florum L1 [gbbct]: 683 CDS's (245761 codons) AmAcid Codon Number /1000 Fraction ..


Amino acid Codon Number Number / 1000 Probability EC Probability Compromise Probability
Gly GGG 848 3.45 0.06 .15 .12
Gly GGA 5717 23.26 0.43 .11 .26
Gly GGT 6147 25.01 0.47 .34 .49
Gly GGC 461 1.88 0.03 .40 .13
Glu GAG 1543 6.28 0.09 .31 .17
Glu GAA 16303 66.34 0.91 .69 .83
Asp GAT 10918 44.43 0.83 .63 .74
Asp GAC 2203 8.96 0.17 .37 .26
Val GTG 632 2.57 0.04 .37 .15
Val GTA 4237 17.24 0.28 .15 .25
Val GTT 9660 39.31 0.65 .26 .52
Val GTC 344 1.40 0.02 .22 .08
Ala GCG 519 2.11 0.04 .36 .15
Ala GCA 6198 25.22 0.46 .21 .38
Ala GCT 6297 25.62 0.47 .16 .34
Ala GCC 522 2.12 0.04 .27 .13
Arg AGG 194 0.79 0.03 .02 .05
Arg AGA 5448 22.17 0.80 .04 .33
Ser AGT 3752 15.27 0.23 .15 .23
Ser AGC 935 3.80 0.06 .28 .16
Lys AAG 2110 8.59 0.09 .23 .15
Lys AAA 21721 88.38 0.91 .77 .85
Asn AAT 13612 55.39 0.77 .45 .62
Asn AAC 4161 16.93 0.23 .55 .38
Met ATG 5660 23.03 1.00 1.00 1.00
Ile ATA 7748 31.53 0.32 .07 .17
Ile ATT 14701 59.82 0.60 .51 .62
Ile ATC 1968 8.01 0.08 .42 .21
Thr ACG 211 0.86 0.02 .27 .10
Thr ACA 7243 29.47 0.55 .13 .38
Thr ACT 5558 22.62 0.42 .17 .38
Thr ACC 274 1.11 0.02 .44 .14
Trp TGG 101 0.41 0.04 1.00 1.00
Trp TGA 2489 10.13 0.96 0.0 0.0
Cys TGT 1275 5.19 0.85 .45 .68
Cys TGC 228 0.93 0.15 .55 .32
End TAG 132 0.54 0.19 .07 .14
End TAA 551 2.24 0.81 .64 .86
Tyr TAT 7191 29.26 0.78 .57 .68
Tyr TAC 1972 8.02 0.22 .43 .32
Leu TTG 1765 7.18 0.08 .13 .16
Leu TTA 15736 64.03 0.71 .13 .49
Phe TTT 10293 41.88 0.81 .57 .70
Phe TTC 2391 9.73 0.19 .43 .30
Ser TCG 206 0.84 0.01 .16 .05
Ser TCA 7413 30.16 0.46 .12 .29
Ser TCT 3585 14.59 0.22 .15 .22
Ser TCC 92 0.37 0.01 .15 .05
Arg CGG 6 0.02 0.00 .10 0.0
Arg CGA 128 0.52 0.02 .06 .06
Arg CGT 998 4.06 0.15 .38 .44
Arg CGC 67 0.27 0.01 .40 .12
Gln CAG 404 1.64 0.05 .65 .24
Gln CAA 7058 28.72 0.95 .35 .76
His CAT 2211 9.00 0.73 .57 .65
His CAC 836 3.40 0.27 .43 .35
Leu CTG 182 0.74 0.01 .50 .11
Leu CTA 1690 6.88 0.08 .04 .08
Leu CTT 2682 10.91 0.12 .10 .17
Leu CTC 52 0.21 0.00 .10 0.0
Pro CCG 203 0.83 0.03 .52 .16
Pro CCA 3516 14.31 0.57 .19 .44
Pro CCT 2306 9.38 0.37 .16 .32
Pro CCC 157 0.64 0.03 .12 .08
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