Mesoplasma florum:Codon usage: Difference between revisions
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Revision as of 19:10, 2 March 2007
The codon usage table for Mesoplasma florum is here:
Mesoplasma florum L1 [gbbct]: 683 CDS's (245761 codons) AmAcid Codon Number /1000 Fraction ..
Amino acid | Codon | Number | Number / 1000 | Probability | EC Probability | Compromise Probability |
Gly | GGG | 848 | 3.45 | 0.06 | .15 | |
Gly | GGA | 5717 | 23.26 | 0.43 | .11 | |
Gly | GGT | 6147 | 25.01 | 0.47 | .34 | |
Gly | GGC | 461 | 1.88 | 0.03 | .40 | |
Glu | GAG | 1543 | 6.28 | 0.09 | .31 | |
Glu | GAA | 16303 | 66.34 | 0.91 | .69 | |
Asp | GAT | 10918 | 44.43 | 0.83 | .63 | |
Asp | GAC | 2203 | 8.96 | 0.17 | .37 | |
Val | GTG | 632 | 2.57 | 0.04 | .37 | |
Val | GTA | 4237 | 17.24 | 0.28 | .15 | |
Val | GTT | 9660 | 39.31 | 0.65 | .26 | |
Val | GTC | 344 | 1.40 | 0.02 | .22 | |
Ala | GCG | 519 | 2.11 | 0.04 | .36 | |
Ala | GCA | 6198 | 25.22 | 0.46 | .21 | |
Ala | GCT | 6297 | 25.62 | 0.47 | .16 | |
Ala | GCC | 522 | 2.12 | 0.04 | .27 | |
Arg | AGG | 194 | 0.79 | 0.03 | .02 | |
Arg | AGA | 5448 | 22.17 | 0.80 | .04 | |
Ser | AGT | 3752 | 15.27 | 0.23 | .15 | |
Ser | AGC | 935 | 3.80 | 0.06 | .28 | |
Lys | AAG | 2110 | 8.59 | 0.09 | .23 | |
Lys | AAA | 21721 | 88.38 | 0.91 | .77 | |
Asn | AAT | 13612 | 55.39 | 0.77 | .45 | |
Asn | AAC | 4161 | 16.93 | 0.23 | .55 | |
Met | ATG | 5660 | 23.03 | 1.00 | 1.00 | |
Ile | ATA | 7748 | 31.53 | 0.32 | .07 | |
Ile | ATT | 14701 | 59.82 | 0.60 | .51 | |
Ile | ATC | 1968 | 8.01 | 0.08 | .42 | |
Thr | ACG | 211 | 0.86 | 0.02 | .27 | |
Thr | ACA | 7243 | 29.47 | 0.55 | .13 | |
Thr | ACT | 5558 | 22.62 | 0.42 | .17 | |
Thr | ACC | 274 | 1.11 | 0.02 | .44 | |
Trp | TGG | 101 | 0.41 | 0.04 | 1.00 | |
Trp | TGA | 2489 | 10.13 | 0.96 | 0.0 | |
Cys | TGT | 1275 | 5.19 | 0.85 | .45 | |
Cys | TGC | 228 | 0.93 | 0.15 | .55 | |
End | TAG | 132 | 0.54 | 0.19 | .07 | |
End | TAA | 551 | 2.24 | 0.81 | .64 | |
Tyr | TAT | 7191 | 29.26 | 0.78 | .57 | |
Tyr | TAC | 1972 | 8.02 | 0.22 | .43 | |
Leu | TTG | 1765 | 7.18 | 0.08 | .13 | |
Leu | TTA | 15736 | 64.03 | 0.71 | .13 | |
Phe | TTT | 10293 | 41.88 | 0.81 | .57 | |
Phe | TTC | 2391 | 9.73 | 0.19 | .43 | |
Ser | TCG | 206 | 0.84 | 0.01 | .16 | |
Ser | TCA | 7413 | 30.16 | 0.46 | .12 | |
Ser | TCT | 3585 | 14.59 | 0.22 | .15 | |
Ser | TCC | 92 | 0.37 | 0.01 | .15 | |
Arg | CGG | 6 | 0.02 | 0.00 | .10 | |
Arg | CGA | 128 | 0.52 | 0.02 | .06 | |
Arg | CGT | 998 | 4.06 | 0.15 | .38 | |
Arg | CGC | 67 | 0.27 | 0.01 | .40 | |
Gln | CAG | 404 | 1.64 | 0.05 | .65 | |
Gln | CAA | 7058 | 28.72 | 0.95 | .35 | |
His | CAT | 2211 | 9.00 | 0.73 | .57 | |
His | CAC | 836 | 3.40 | 0.27 | .43 | |
Leu | CTG | 182 | 0.74 | 0.01 | .50 | |
Leu | CTA | 1690 | 6.88 | 0.08 | .04 | |
Leu | CTT | 2682 | 10.91 | 0.12 | .10 | |
Leu | CTC | 52 | 0.21 | 0.00 | .10 | |
Pro | CCG | 203 | 0.83 | 0.03 | .52 | |
Pro | CCA | 3516 | 14.31 | 0.57 | .19 | |
Pro | CCT | 2306 | 9.38 | 0.37 | .16 | |
Pro | CCC | 157 | 0.64 | 0.03 | .12 |