Michael R. Pina Week 4: Difference between revisions

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*The Biology Workbench does not seem the most user friendly, but it works just fine and gets the job done. I was able to align 4 sequences acquired from GenBank without any problems.
*The Biology Workbench does not seem the most user friendly, but it works just fine and gets the job done. I was able to align 4 sequences acquired from GenBank without any problems.
===Activity 2===
===Activity 2===
My tree (linked below) shows that at the first visit, clones within each subject are clustered pretty close together. Subject 3 shows the most divergence from the others.
====Files====
====Files====
[[Media:Mpina visit 1 S1 S9.txt|Visit 1, subjects 1-9]]
[[Media:Mpina visit 1 S1 S9.txt|Visit 1, subjects 1-9]]

Revision as of 12:32, 9 February 2010

Activity 1

  • The accession number of the sequence is AF016768.
  • The sequence comes from subject 1; the definition section of the record contains this information as well as other information such as which visit.
  • The Biology Workbench does not seem the most user friendly, but it works just fine and gets the job done. I was able to align 4 sequences acquired from GenBank without any problems.

Activity 2

My tree (linked below) shows that at the first visit, clones within each subject are clustered pretty close together. Subject 3 shows the most divergence from the others.

Files

Visit 1, subjects 1-9

Visit 1, subjects 10-15

Tree