Mimulus:Microsatellite recipes: Difference between revisions
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*Check out the [http://mimulusevolution.org Mimulus Biological Resource Center] for map location of these microsatellies. | *Check out the [http://mimulusevolution.org Mimulus Biological Resource Center] for map location of these microsatellies. | ||
*The primers are archived in genbank. | *The primers are archived in genbank. | ||
*Contact David Lowry (dbl2@duke.edu) for more inforamtion about these markers. | *Contact David Lowry (dbl2@duke.edu) or other members of the [[Mimulus Community]] for more inforamtion about these markers. | ||
Below are the recipes that have been fine-tuned for ''Mimulus guttatus'': | Below are the recipes that have been fine-tuned for ''Mimulus guttatus'': | ||
Revision as of 09:25, 19 February 2006
- The original reference for the AAT markers: Kelly and Willis 1998
- Check out the Mimulus Biological Resource Center for map location of these microsatellies.
- The primers are archived in genbank.
- Contact David Lowry (dbl2@duke.edu) or other members of the Mimulus Community for more inforamtion about these markers.
Below are the recipes that have been fine-tuned for Mimulus guttatus:
AAT 9
Dye: VIC
Annealing Temp: 55
Cycles: 26
- H20 5.05μl
- 10X Buffer 1.5μl
- MgCl2 (25mM) 1.2μl
- dNTPs (2.5mM) 1.2μl
- AAT9R 0.6μl
- AAT9F 0.25μl
- Taq 0.2μl
AAT 39
Dye: FAM
Annealing Temp 53
Cycles 25
- H20 5.05μl
- 10X Buffer 1.5μl
- MgCl2 (25mM) 1.2μl
- dNTPs (.25mM) 1.2μl
- 39R 0.6μl
- 39F 0.25μl
- Taq 0.2μl
AAT 211
Dye: FAM
Annealing Temp: 53
Cycles: 22
- H20 5.05μl
- 10X Buffer 1.5μl
- MgCl2 (25mM) 1.2μl
- dNTPs (.25mM) 1.2μl
- 211R 0.6μl
- 211F 0.25μl
- Taq 0.2μl
AAT 217
Dye: FAM
Annealing Temp 54
Cycles 27
per sample x15 x110
• H20 5.05μl 75.75μl 555.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.2μl 18μl 132μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 217R 0.6μl 9μl 66μl • 217F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 222- NED
• Annealing Temp 53
• Cycles 30
per sample x15 x110
• H20 5.05μl 75.75μl 555.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.2μl 18μl 132μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 222R 0.6μl 9μl 66μl • 222F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 225- VIC
• Annealing Temp 53
• Cycles 32
per sample x15 x110
• H20 5.05μl 75.75μl 555.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.2μl 18μl 132μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 225R 0.6μl 9μl 66μl • 225F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 230 - VIC
• Annealing Temp 54 • Cycles 28
per sample x15 x110
• H20 3.85μl 57.75μl 423.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 2.4μl 36μl 264μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 230R 0.6μl 9μl 66μl • 230F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 233- FAM
• Annealing Temp 53
• Cycles 28
per sample x15 x110
• H20 5.05μl 75.75μl 555.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.2μl 18μl 132μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 233R 0.6μl 9μl 66μl • 233F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 240 - FAM
• Annealing Temp 54 • Cycles 25
per sample x15 x110
• H20 4.45μl 66.75μl 489.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.8μl 27μl 198μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 240R 0.6μl 9μl 66μl • 240F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 242- FAM
• Annealing Temp 49
• Cycles 32
per sample x15 x110
• H20 5.05μl 75.75μl 555.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.2μl 18μl 132μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 242R 0.6μl 9μl 66μl • 242F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 261 - VIC
• Annealing Temp 49 • Cycles 30
per sample x15 x110
• H20 4.45μl 66.75μl 489.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.8μl 27μl 198μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 261R 0.6μl 9μl 66μl • 261F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 265- NED
• Annealing Temp 55
• Cycles 20
per sample x15 x110
• H20 5.05μl 75.75μl 555.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.2μl 18μl 132μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 265R 0.6μl 9μl 66μl • 265F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 267- VIC
• Annealing Temp 49
• Cycles 30
per sample x15 x110
• H20 3.85μl 57.75μl 423.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 2.4μl 36μl 264μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 267R 0.6μl 9μl 66μl • 267F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 272- NED
• Annealing Temp 54
• Cycles 30
per sample x15 x110
• H20 4.45μl 66.75μl 489.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.8μl 27μl 198μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 272R 0.6μl 9μl 66μl • 272F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 278 - NED
• Annealing Temp 53 • Cycles 24
per sample x15 x110
• H20 2.95μl 44.25μl 324.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.8μl 27μl 198μl • KCl (0.5M) 1.5μl 22.5μl 165μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 278R 0.6μl 9μl 66μl • 278F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 283 - VIC
• Annealing Temp 52 • Cycles 29
per sample x15 x110
• H20 3.85μl 96.25μl 423.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 2.4μl 36μl 264μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 283R 0.6μl 9μl 66μl • 283F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 296 - NED
• Annealing Temp 53 • Cycles 28
per sample x15 x110
• H20 2.1μl 31.5μl 231μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.8μl 27μl 198μl • KCl (.5M) 1.5μl 22.5μl 165μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 296R ** 1.2μl 18μl 132μl ** • 296F ** 0.5μl 7.5μl 55μl ** • Taq 0.2μl 3μl 22μl
AAT 300 - FAM
• Annealing Temp 55 • Cycles 22
per sample x15 x110
• H20 5.05μl 75.75μl 555.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.2μl 18μl 132μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 300R 0.6μl 9μl 66μl • 300F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 308 - VIC
• Annealing Temp 55 • Cycles 24
per sample x15 x110
• H20 5.05μl 75.75μl 555.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.2μl 18μl 132μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 308R 0.6μl 9μl 66μl • 308F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 312 - NED
• Annealing Temp 51 • Cycles 30
per sample x15 x110
• H20 2.95μl 44.25μl 324.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.8μl 27μl 198μl • KCl (0.5M) 1.5μl 22.5μl 165μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 312R 0.6μl 9μl 66μl • 312F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 333 - VIC
• Annealing Temp 51 • Cycles 30
per sample x15 x110
• H20 3.85μl 57.75μl 423.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 2.4μl 36μl 264μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 333R 0.6μl 9μl 66μl • 333F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 350 - FAM
• Annealing Temp 52 • Cycles 28
per sample x15 x110
• H20 5.05μl 75.75μl 555.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.2μl 18μl 132μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 350R 0.6μl 9μl 66μl • 350F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 356- VIC
• Annealing Temp 55
• Cycles 25
per sample x15 x110
• H20 5.05μl 75.75μl 555.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.2μl 18μl 132μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 356R 0.6μl 9μl 66μl • 356F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 364- NED
• Annealing Temp 53
• Cycles 30
per sample x15 x110
• H20 3.7μl 55.5μl 407μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.8μl 27μl 198μl • KCl (.5M) 0.75μl 11.25μl 82.5μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 364R 0.6μl 9μl 66μl • 364F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 367 - VIC
• Annealing Temp 54 • Cycles 22
per sample x15 x110
• H20 4.45μl 66.75μl 489.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.8μl 27μl 198μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 367R 0.6μl 9μl 66μl • 367F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 372- NED
• Annealing Temp 55
• Cycles 25
per sample x15 x110
• H20 4.45μl 66.75μl 621.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 0.6μl 9μl 66μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 372R 0.6μl 9μl 66μl • 372F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AAT 374 - FAM
• Annealing Temp 53 • Cycles 28
per sample x15 x110
• H20 4.45μl 66.75μl 489.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.8μl 27μl 198μl • dNTPs (.25mM) 1.2μl 18μl 132μl • 374R 0.6μl 9μl 66μl • 374F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
AG 19- NED
• Annealing Temp 53
• Cycles 30
per sample x15 x110
• H20 5.65μl 84.75μl 621.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 0.6μl 9μl 66μl • dNTPs (.25mM) 1.2μl 18μl 132μl • AG19R 0.6μl 9μl 66μl • AG19F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
ap3-VIC
• Annealing Temp 53
• Cycles 25
per sample x15 x110
• H20 5.1μl 76.5μl 561μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.2μl 18μl 132μl • dNTPs (.25mM) 1.2μl 18μl 132μl • AP3R 0.6μl 9μl 66μl • AP3F 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
lfy- NED
• Annealing Temp 52
• Cycles 19
per sample x15 x110
• H20 5.05μl 75.75μl 555.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.2μl 18μl 132μl • dNTPs (.25mM) 1.2μl 18μl 132μl • LFYR 0.6μl 9μl 66μl • LFYF 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
CYCB - FAM
• Annealing temp 62
• cycles 16
per sample x15 x110
• H20 5.05μl 75.75μl 555.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.2μl 18μl 132μl • dNTPs (.25mM) 1.2μl 18μl 132μl • CYCBR 0.6μl 9μl 66μl • CYCBF 0.25μl 3.75μl 27.5μl • Taq 0.2μl 3μl 22μl
CYCA - FAM
• Annealing temp 58
• cycles 37
per sample x15 x110
• H20 4.05μl 60.75μl 445.5μl • 10X Buffer 1.5μl 22.5μl 165μl • MgCl2 (25mM) 1.8μl 27μl 198μl • dNTPs (.25mM) 1.5μl 22.5μl 165μl • CYCAR 0.65μl 9.75μl 71.5μl • CYCAF 0.3μl 4.5μl 33μl • Taq 0.2μl 3μl 22μl
