Mimulus Community: Difference between revisions

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Become a [[Mimulus membership|member]] today.
Become a [[Mimulus membership|member]] today.


==The ''Mimulus'' Genome==
==Announcements==
The Joint Genome Institute (JGI/DOE) completed 6X coverage of the ''Mimulus'' genome in Spring 2007. An assembly of the genome was completed in Summer 2007. Members of the ''Mimulus'' Community are currently annotating the Genome.  JGI plans to complete 8X coverage of the genome later this year. Annotation of the ''Mimulus'' Genome can be accessed though this [http://mimulus.private.openwetware.org/ link].  This is currently a private site, but will be open to the public soon.
[[Image:Mimi.jpg|thumb|right|Mimulus Meeting 2006 at Duke University]]
[[Image:GroupPhotoOct07.jpg|thumb|right|Mimulus Meeting 2007 at NESCent]]
 
*The ''Mimulus guttatus'' IM62 genome assembly and preliminary annotation is now available for search and download from [http://www.phytozome.net/mimulus Phytozome].
*Download the [[Media:List.doc|contact info]] for people who attended the 2007 Mimulus meeting in Durham, NC.
*There are now 436 [[Media:Mimulus_populations_3_22_09.xls|''Mimulus'' populations]] currently stored at the Duke University Seed Stock Center, as of March 2009


==The Genus==
==The Genus ''Mimulus''==
The genus ''Mimulus'' (historically "Scrophulariaceae," order Lamiales) has been a [http://www.mimulusevolution.org/ model plant system] for ecological and evolutionary genetics for over 50 years (Vickery, 1951).   
The genus ''Mimulus'' (historically "Scrophulariaceae," order Lamiales) has been a [http://www.mimulusevolution.org/ model plant system] for ecological and evolutionary genetics for over 50 years (Vickery, 1951).   


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*See descriptions of [[Mimulus Species]]
*See descriptions of [[Mimulus Species]]


===''Mimulus guttatus'' Complex===
==The ''Mimulus'' Genome==
 
The Joint Genome Institute (JGI/DOE) completed 7X coverage of the ''Mimulus'' genome in Spring 2007.  An assembly of the 7x genome was completed in Summer 2008.  Members of the ''Mimulus'' Community are currently annotating the Genome and working on a final assembly of the sequenced scaffolds. The ''Mimulus'' Genome can be accessed though [http://www.phytozome.net/ Phytozome].
The ''Mimulus guttatus'' species complex (yellow monkey flowers) is a group of closely related species exhibiting the common evolutionary transition from outcrossing to self-pollination. ''Mimulus'' presents an excellent model system for studies of evolution because of its broad diversity of floral morphologies, incomplete reproductive barriers, and its amenability to experimental manipulation.
 
===''Mimulus lewisii'' Complex===
Mimulus section Erythranthe is a western North American group of perennial wildflowers with a wide diversity of floral forms. Included within this section are the bee-pollinated M. lewisii and the hummingbird-pollinated M. cardinalis. This system has a long history of study (1), and continues to be the subject of active research in systematics (2) and the genetics and ecology of speciation (3-5). Another close relative of M. lewisii is the lesser-studied M. parishii, which is a small-flowered, highly selfing species of the desert Southwest. The diversity of pollination syndrome, mating system, and habitat preference found within this section makes it a uniquely amenable model system for studies in ecology, genetics, and evolutionary biology of natural populations.


==People==
==People==
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|-  
|-  
| '''Labs'''
| '''Labs'''
*[http://rydberg.biology.colostate.edu/angert/index.html Amy Angert]
*[http://faculty.washington.edu/toby/ Toby Bradshaw]
*[http://faculty.washington.edu/toby/ Toby Bradshaw]
*[[Anna Blenda]]
*[[Anna Blenda]]
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*[http://www.ubcbotanicalgarden.org/research/cronk.php Quentin Cronk]
*[http://www.ubcbotanicalgarden.org/research/cronk.php Quentin Cronk]
*[http://www.life.umd.edu/biology/dudashlab/dudashlabpage.html Michele Dudash]
*[http://www.life.umd.edu/biology/dudashlab/dudashlabpage.html Michele Dudash]
*[http://dbs.umt.edu/personnel/facultyasp/facultydrill.aspx?id=879 Lila Fishman]
*[http://dbs.umt.edu/research%5Flabs/fishmanlab/ Lila Fishman]
*[http://ag.arizona.edu/pls/faculty/gang.htm David Gang]
*[http://myweb.csuchico.edu/~ctivey/Ivey_research.html Chris Ivey]
*[http://myweb.csuchico.edu/~ctivey/Ivey_research.html Chris Ivey]
*[http://www.uwm.edu/Dept/Biology/Docs/Faculty/karron.html Jeffery Karron]
*[http://www.uwm.edu/Dept/Biology/Docs/Faculty/karron.html Jeffery Karron]
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*[http://www.genetics.forestry.ubc.ca/ritland/ Kermit Ritland]
*[http://www.genetics.forestry.ubc.ca/ritland/ Kermit Ritland]
*[http://plantbiology.msu.edu/faculty/faculty-research/doug-schemske/ Doug Schemske]
*[http://plantbiology.msu.edu/faculty/faculty-research/doug-schemske/ Doug Schemske]
*[http://ceeb.uoregon.edu/faculty_pages/Streisfeld.shtml Matt Streisfeld]
*[http://www.ex.ac.uk/~MRMacnai/welcome.html Mark Macnair]
*[http://www.ex.ac.uk/~MRMacnai/welcome.html Mark Macnair]
*[http://www.bio.txstate.edu:16080/~martin/ Noland Martin]
*[http://www.bio.txstate.edu:16080/~martin/ Noland Martin]
*[http://www.coevolucion.cl/Rodrigo%20Medel/Rodrigo%20Medel.html Rodrigo Medel]
*[http://www3.uakron.edu/biology/mitchell/index.html Randall Mitchell]
*[http://www3.uakron.edu/biology/mitchell/index.html Randall Mitchell]
*[http://mcb.berkeley.edu/index.php?option=com_mcbfaculty&name=rokhsard Dan Rokhsar]
*[http://www.biology.utah.edu/faculty2.php?inum=49 Bob Vickery]
*[http://www.biology.utah.edu/faculty2.php?inum=49 Bob Vickery]
*[http://visionlab.bio.unc.edu/ Todd Vision]
*[http://visionlab.bio.unc.edu/ Todd Vision]
*[[Willis:Research|John Willis]]
*[http://www.biology.duke.edu/willislab/ John Willis]
*[http://biology.richmond.edu/faculty/Wu_Carrie.html Carrie Wu]
 


|'''Post-Docs'''
|'''Post-Docs'''
 
*[[Arielle Cooley]]
*[http://www.u.arizona.edu/~angert/ Amy Angert]
*[http://evodevo.uoregon.edu/people/blackman.html Ben Blackman]
*[[Camille Barr]]
*[http://www.eeob.iastate.edu/faculty/WendelJ/lexflagel.htm Lex Flagel]
*[http://www.duke.edu/~bouck Amy Bouck]  
*[http://labs.eeb.utoronto.ca/barrett/Friedman.html Jannice Friedman]
*[http://www.unc.edu/~ganko Eric Ganko]  
*[http://www.unc.edu/~ganko Eric Ganko]  
*[http://purugganan.gnets.ncsu.edu/people/people.html Megan Hall]
*[http://purugganan.gnets.ncsu.edu/people/people.html Megan Hall]
*[http://visionlab.bio.unc.edu/postdocs.ptml#rajkumar Rajkumar Rathinavelu]
*[http://entomology.wisc.edu/~holeski/ Liza Holeski]
*[http://www-biology.ucsd.edu/~mstreisf/ Matt Streisfeld]
*[http://openwetware.org/wiki/User:Young_Wha_Lee Young Wha Lee]
*[[Mimulus:David Lowry|David Lowry]]
*[http://www.rochester.edu/College/BIO/labs/ORRLAB/andrea.html Andrea Sweigart]
*[http://www.rochester.edu/College/BIO/labs/ORRLAB/andrea.html Andrea Sweigart]
*[http://grad.bio.uci.edu/ecoevo/cwu/ Carrie Wu]
*[http://sites.google.com/site/yaowuyuanswebpage/ Yaowu Yuan]
 
 
 
 
 




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| '''Grad Students'''
| '''Grad Students'''
*[http://ucsu.colorado.edu/%7Ebakerrl/index.html Rob Baker]
*[http://rintintin.colorado.edu/~bakerrl/Rob_Baker_Plant_Evolution_and_Development/Evolution_and_Development_of_Plant_Architecture.html Rob Baker]
*[http://biotype.biology.dal.ca/mjohnst/People.html Magdalena Bartkowska]
*[http://biotype.biology.dal.ca/mjohnst/People.html Magdalena Bartkowska]
*[http://students.washington.edu/kjbyers/ Kelsey Byers]
*[http://www.genetics.forestry.ubc.ca/ritland/people.html Charles Chen]
*[http://www.genetics.forestry.ubc.ca/ritland/people.html Charles Chen]
*[[Arielle Cooley]]
*[[Katie Ferris]]
*[[Katie Ferris]]
*[http://anabaena.net/mimulus.php Naomi Fraga]
*[http://www.biology.wustl.edu/faculty/templeton/People/Nick's%20Page/Griffin.html Nick Griffin]
*[http://www.biology.wustl.edu/faculty/templeton/People/Nick's%20Page/Griffin.html Nick Griffin]
*[[Dena Grossenbacher]]
*[[Dena Grossenbacher]]
*[http://www.eve.ucdavis.edu/systrauss/people.htm Jon Haloin]
*[http://www.eve.ucdavis.edu/systrauss/people.htm Jon Haloin]
*[http://openwetware.org/wiki/User:Young_Wha_Lee]
*[[Deborah Lloyd]]  
*[[Deborah Lloyd]]  
*[[Mimulus:David Lowry|David Lowry]]
*[[Jennifer Modliszewski]]
*[[Jennifer Modliszewski]]
*[http://students.washington.edu/crp7/ Christina Pince]
*[http://students.washington.edu/crp7/ Christina Pince]
*[http://www.plantsciences.ucdavis.edu/Ricelab/ Jason Sexton]
*[http://www.plantsciences.ucdavis.edu/Ricelab/ Jason Sexton]
*[http://www.mobot.org/MOBOT/Research/curators/sheth.shtml Seema Sheth]
*[http://sobel.schemskelab.plantbiology.msu.edu Jay Sobel]
*[http://sobel.schemskelab.plantbiology.msu.edu Jay Sobel]
*[[Mimulus:Kevin Wright|Kevin Wright]]
*[[Mimulus:Kevin Wright|Kevin Wright]]
|'''Research Assistants'''
*[http://www.arpiarsaunders.com/index.html Arpiar Saunders]




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|}
|}


==Announcements==
==Seed Collections==
[[Image:Mimi.jpg|thumb|right|Mimulus Meeting 2006 at Duke University]]
Duke University is now the home to the collection of seeds from over 425 populations of ''Mimulus''. The seed collections are primarily composed of seeds from within the ''Mimulus guttatus'' complex. Most of these seeds can be made available for upon request.  Please allow a few weeks for orders to be fulfilled.  [[Media:‎Mimulus_populations_3_22_09.xls|Mimulus collections list]]
[[Image:GroupPhotoOct07.jpg|thumb|right|Mimulus Meeting 2007 at NESCent]]
 
*Download the [[Media:List.doc|contact info]] for people who attended the 2007 meeting.
 
==Papers==
*[http://www.biology.utah.edu/faculty3.php?inum=49 Vickery]
*[[Ritland]]
*[[Beardsley]]
*[[Bradshaw]]
*[[MacNair]]


==Techniques==
==Techniques==
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#[[Mimulus:Microsatellite recipes|Microsatellite Recipes]]
#[[Mimulus:Microsatellite recipes|Microsatellite Recipes]]
#[[Mimulus:Seed Sterilization|Seed Sterilization]]
#[[Mimulus:Seed Sterilization|Seed Sterilization]]
==Seed Collections==
Below is an excel spreadsheet that lists the seed collections of ''Mimulus'' that are currently located at Duke University.  The seed collections are primarily composed of seeds from within the ''Mimulus guttatus'' complex. Most of these seeds can be made available for upon request.  Please allow a few weeks for orders to be fulfilled.  Contact [[David Lowry]] at david.lowry@duke.edu for seed requests or information about collection locations.
*[[Media:Mimulus populations.xls|Collection Spreadsheet (Excel Spreadsheet)]]
==Mimulus Discussion Page==
Check out the [[Mimulus Discussion Page]] to see what people in the community are saying and to leave your own messages.  Make sure to leave you name and date of entry for all additions.
==Mimulus web sites==
*[http://www.mimulusevolution.org/ Mimulus Biological Resource Center]
*[http://www.genome.clemson.edu/projects/mimulus/ Clemson University Genomics Institute website]
*[http://www.ncbi.nlm.nih.gov/blast/mmtrace.shtml Blast the NCBI Trace Archives]
*[http://www.ex.ac.uk/~MRMacnai/guttatus.html ''Mimulus guttatus'' complex]
*[http://www.jgi.doe.gov/sequencing/why/CSP2006/mimulus.html JGI annoncement of whole genome sequencing]
*[http://www.efloras.org/florataxon.aspx?flora_id=2&taxon_id=120756 Mimulus Flora of China]
*[http://www-biol.paisley.ac.uk/bioref/Plantae_Mimulus/Mimulus.html Biodiversity]
==Bioinformatic Software and Resources==
*[http://www.fruitfly.org/annot/apollo/ Apollo]
*[http://globin.cse.psu.edu/html/docs/sim4.html sim4]
*[http://genome.ucsc.edu/ BLAT]
*[http://www.ncbi.nlm.nih.gov/blast/mmtrace.shtml NCBI Trace Archives]
*[http://www.ebi.ac.uk/clustalw/ ClustalW]
*[http://frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi Primer 3]
<wikionly>
<font size=4>'''Recent changes to Mimulus wiki'''</font>{{Special:Recentchanges/Mimulus}}
</wikionly>

Revision as of 13:47, 8 December 2010

Mimulus guttatus

The Mimulus Community

Become a member today.

Announcements

Mimulus Meeting 2006 at Duke University
Mimulus Meeting 2007 at NESCent
  • The Mimulus guttatus IM62 genome assembly and preliminary annotation is now available for search and download from Phytozome.
  • Download the contact info for people who attended the 2007 Mimulus meeting in Durham, NC.
  • There are now 436 Mimulus populations currently stored at the Duke University Seed Stock Center, as of March 2009

The Genus Mimulus

The genus Mimulus (historically "Scrophulariaceae," order Lamiales) has been a model plant system for ecological and evolutionary genetics for over 50 years (Vickery, 1951).

  • Check out the poster of the phylogeny of the Mimulus genus.

The Mimulus Genome

The Joint Genome Institute (JGI/DOE) completed 7X coverage of the Mimulus genome in Spring 2007. An assembly of the 7x genome was completed in Summer 2008. Members of the Mimulus Community are currently annotating the Genome and working on a final assembly of the sequenced scaffolds. The Mimulus Genome can be accessed though Phytozome.

People

Mimulus lewisii and Mimulus cardinalis with hybrids
Labs


Post-Docs







Grad Students





Seed Collections

Duke University is now the home to the collection of seeds from over 425 populations of Mimulus. The seed collections are primarily composed of seeds from within the Mimulus guttatus complex. Most of these seeds can be made available for upon request. Please allow a few weeks for orders to be fulfilled. Mimulus collections list

Techniques

  1. DNA Extraction Protocol
  2. Microsatellite Recipes
  3. Seed Sterilization
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