Misc

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Protocol News

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In vivo

<showhide> Escherichia coli__HIDER__ <hide> • Bacterial cell culture
Bacterial transformation

Preparing chemically competent cells (TSS)
Transforming chemically competent cells (TSS)
Preparing electrocompetent cells
Transforming electrocompetent cells

β-Galactosidase Assay (A better Miller)
Colony PCR
Making a long term stock of bacteria
Miniprep
P1vir phage transduction
Pour LB plates
Protein expression resource
S_N Chemostat Protocol
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<showhide> Mesoplasma florum__HIDER__ <hide> • Preparing culture media
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<showhide> T7__HIDER__ <hide> • Cesium Chloride Purification of T7
Simple lysate protocol from plaque or lysate
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<showhide> Yeast__HIDER__ <hide> • Assaying mating
Cell Cycle Arrest
Dropout plates for yeast
High Efficiency Transformation
Layered plates
Pour YPD plates
Simple Yeast Lysate (for Western etc.)
Time-Lapse Microscopy
Yeast Colony PCR
Yeast DNA Prep

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In silico

<showhide> Sequence Analysis__HIDER__ <hide> • BLAST
CLUSTALW
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<showhide> Structure__HIDER__ <hide> • THREADER
Homology Modelling
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<showhide> Pathway Modelling__HIDER__ <hide> • Flux Balance Analysis
Minimisation of Metabolic Adjustment
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Other

<showhide> Flow Cytometry__HIDER__ <hide> • Flow Calibration
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<showhide> Microfluidics__HIDER__ <hide> • Design a Microfluidic Chip
Order a Microfluidic Chip from the Foundry
Operate Microfluidic Chemostat
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<showhide> Microscopy__HIDER__ <hide> • Agarose Pads for Microscopy
Quantitative Microscopy
Time-Lapse Microscopy
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<showhide> Plate reader__HIDER__ <hide> • Perkin Elmer Victor3
-Plate reader usage protocols
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General resources
Protocol-online Contains a lot of useful protocols and a popular discussion section.

Protocols in Development Please Contribute!
Pulse-chase protein production
Fixing cells
B-galactosidase assay
RNA Half-life
Denaturing acrylamide gel purification of nucleic acids
Quantification of nucleic acids

In vitro

<showhide> Nucleic acids__HIDER__ <hide> • Nucleic acid precipitation
Phenol/chloroform extraction
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<showhide> DNA__HIDER__ <hide> • Agarose gel electrophoresis
Annealing Primers
Designing primers
DNA Ligation
Library Generation
Miniprep
PCR
Phosphatase treatment of linearized vector
Polony Protocols (Church/Mitra Lab)
PNK Treatment of DNA Ends
Purification of DNA
Reconstituting primers
Restriction digest
'Round-the-horn site-directed mutagenesis
Sequencing DNA
Site-directed mutagenesis
Templiphi
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<showhide> RNA__HIDER__ <hide> • In vitro transcription with T7 RNA polymerase
Northern Blot, 32P End-Labeled Probes
Probe Prep, 32P End-Labeled Probes
RNA Extraction
RNase Protection Assay
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<showhide> Protein__HIDER__ <hide> • Acrylamide gels and SDS-PAGE
Coomassie Destain
Coomassie Stain
HPLC
Silver staining
Western Blot
Purification of His-tagged proteins
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