Mukhopadhyay

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
(May 13th 2013)
Current revision (03:40, 17 April 2017) (view source)
 
(58 intermediate revisions not shown.)
Line 1: Line 1:
{{Template:Mukhopadhyay}}
{{Template:Mukhopadhyay}}
-
[[Image:Mukhopadhyay_Pump.jpg‎ |thumb|220px|right|Efflux Pumps provide a direct mechanism to alleviate product toxicity (Image prepared by [http://www.jbei.org/management/people2.shtml Everett Kaplan] (JBEI))]]
 
-
<font face="calibri" size="+1" style="color:#000000">Welcome to the Mukhopadhyay Group page!!
 
-
<br>
 
-
<br>
 
-
We are an interdisciplinary team at the [http://www.lbl.gov/ Berkeley Lab] studying signaling and stress response in both environmental and engineered organisms. We are part of the [http://enigma.lbl.gov/ ENIGMA] project where our research includes the study of two component signaling in the model sulfate reducing bacterium ''Desulfovibrio vulgaris'' Hildenborough. As part of the [http://jbei.org/index.html Joint BioEnergy Institute] we adopt targeted and systems biology approaches to elucidate causes of inhibition during fuel/ solvent production from lignocellulose using the host microbes such as ''Escherichia coli'' and ''Saccharomyces cerevisiae''. We hope to engineer better hosts for metabolite production and develop tools that are universally useful for microbial cellular engineering. Recently we have also become interested in studying signaling and response in cyanobacteria that dominate desert soil crusts.
 
-
<br>
 
-
<br>
 
-
More about [http://openwetware.org/wiki/User:Aindrila_Mukhopadhyay Aindrila]
 
-
<br>
 
-
__NOTOC__
 
-
== '''GROUP NEWS!!''' ==
 
-
=== May 13th 2013===
 
-
[[Image:SAT-2013-05-13.jpg|thumb|130px|right|]] We get a chance to talk about our research at the Berkeley Rep!
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
=== March 19th 2013===
 
-
[[Image:Energy dot gov screen shot.jpg|thumb|350px|left| [http://energy.gov/articles/making-stem-personal-introducing-women-energy-series women at energy]]]We get a [http://energy.gov/diversity/articles/women-energy-aindrila-mukhopadhyay mention] in the Department Of Energy feature on STEM profiles. 
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
 +
= We have moved!  Our new location is [http://m-group.lbl.gov/ HERE!] =
-
=== Oct 1st 2012===
 
-
[[Image:Mukhopadhyay group Sept 2012.jpg|thumb|500px|right|Left to Right: Kavya, Melissa, Nhat-Tan, Lara, Marijke, Camille, Florence, Jee-Loon, Aindrila, Eric, Heather, Zain and Amanda]] The whole group at the Can't Fail cafe. We have new members in the group - Amanda Reider Appel and Nhat Than Vuong!
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
<br>
<br>
-
 
+
[[Image:JBEI pumpkin 2015.png |thumb|220px|right|]]We are an interdisciplinary team at [http://www.lbl.gov/ Berkeley Lab] studying both engineered and environmental microbes. We are the Host Engineering group at [http://www.jbei.org/research/divisions/fuels-synthesis/host-engineering/ JBEI], and we adopt targeted and systems biology approaches to elucidate causes of inhibition during fuel and chemicals production in microbial systems such as ''Escherichia coli'' and ''Saccharomyces cerevisiae''. We focus on engineering robust hosts for metabolite production, and we develop strategies that are universally useful, for microbial host engineering. We also engineer microbes towards catabolism of environmental pollutants,  where we address bioremediation of hydrocarbons, organophosphate and phosphonate compounds. We are part of the [http://enigma.lbl.gov/ ENIGMA] project where we take comprehensive systems biology approaches to examine bacterial signaling in ubiquitous and environmentally important, sulfate and metal reducing bacteria. We also study rainfall events and signaling in the fabulous cyanobacteria that dominate the desert soil crusts on our planet.
-
 
+
-
 
+
-
=== Feb 14th 2012 ===
+
-
[[Image:Screen shot 2012-02-14 at 1.51.17 PM.png|thumb|400px|left|]] Science Today, a UC Berkeley Radio channel, features [http://www.ucop.edu/sciencetoday/article/27039 comments] on our study of the ''D. vulgaris'' two component system regulator network.  
+
<br>
<br>
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
 
-
=== Nov 9th 2011 ===
 
-
[[Image:Response regulator Map News Article.png|thumb|250px|right|]] Lara and Eric's Response Regulator Map [http://genomebiology.com/2011/12/10/R99 paper] gets written about in Berkeley Lab's [http://newscenter.lbl.gov/news-releases/2011/11/09/gene-map-of-sulfate-reducing-bacterium/ TABL] site.
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
 
-
 
-
 
-
 
-
=== Oct 15th 2011 ===
 
-
[[Image:Lara Openhouse.jpg|thumb|300px|left|(Lara at the Soil crust display at the [http://www.lbl.gov/openhouse/ Berkeley Lab open house])]] [http://openwetware.org/wiki/User:Lara_Rajeev Lara] and Eric's ''D. vulgaris'' Response Regulator map paper is out in [http://genomebiology.com/2011/12/10/R99 Genome Biology].
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
 
-
 
-
=== Sept 27th 2011 ===
 
-
[[Image:Image for biabolene paper.jpg|thumb|250px|right|(Photo by Roy Kaltschmidt, Berkeley Lab)]] [http://openwetware.org/wiki/User:Mario_Ouellet Mario] (in the blue lab coat!!) features in the Berkeley Lab news letter [http://newscenter.lbl.gov/news-releases/2011/09/27/jbei-scientists-identify-bisabolane-as-an-alternative-to-diesel-fuel/ TABL] for his important contribution in developing Bisabolene production in yeast. Here is a link to Pamela and TaekSoon's [http://www.nature.com/ncomms/journal/v2/n9/full/ncomms1494.html Nature Communications paper]
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
 
-
 
-
=== August 22nd 2011 ===
 
-
[[Image:13140229931868-200x256-noup.jpg|thumb|150px|left]] [http://openwetware.org/wiki/User:Zain_Y_Dossani Zain], [http://openwetware.org/wiki/User:Heather_Szmidt Heather] and Aindrila feature on the cover of the [http://www.biorefiningmagazine.com/issues/browse/ Biorefining magazine]. Here is the [http://www.biorefiningmagazine.com/articles/5732/the-bio-academic-entrepreneurs article].
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
 
-
 
-
=== July 1st 2011 ===
 
-
[[Image:Microbe magazine pump blurb.jpg|thumb|200px|left]] Our [http://www.nature.com/msb/journal/v7/n1/full/msb201121.html efflux pump paper] gets a [http://www.microbemagazine.org/index.php/07-2011-current-topics/3541-minitopics mention] in the Microbe magazine. Other mentions of our study are in [http://www.eurekalert.org/pub_releases/2011-05/dbnl-str051111.php eureka alert], [http://tech-blog.org/energy-news/cluster155792/ techblog], [http://www.sciencedaily.com/releases/2011/05/110511131143.htm science daily], [http://www.microbeworld.org/index.php?option=com_jlibrary&view=article&id=6754 microbeworld], [http://www.sciencedirect.com/science/article/pii/S1369702111701560 Materials Today] to list a few!!!
 
-
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
<br>
 
-
 
-
 
-
 
-
----
 
-
 
-
[[Image:Doe-bioenergy-research-cent.jpg|75px|http://genomicscience.energy.gov/centers/]]
 
-
[[Image:LBNL-Logo-Full.png|75px|http://www.lbl.gov]]
 
-
[[Image:ENIGMA_logo.jpg|75px|http://enigma.lbl.gov/ENIGMA]]
 
-
[[Image:Total.jpg|75px]]
 
-
----
+
[http://openwetware.org/wiki/User:Aindrila_Mukhopadhyay About Aindrila]
-
<html>
+
-
Visitors <a href="http://www4.clustrmaps.com/user/fd8e68fa"><img src="http://www4.clustrmaps.com/stats/maps-no_clusters/openwetware.org-wiki-Mukhopadhyay-thumb.jpg" alt="Locations of visitors to this page" />
+
-
</a>
+
-
</html>
+

Current revision

About us            Contact            People            Research            Pubs etc            Internal           



We have moved! Our new location is HERE!


We are an interdisciplinary team at Berkeley Lab studying both engineered and environmental microbes. We are the Host Engineering group at JBEI, and we adopt targeted and systems biology approaches to elucidate causes of inhibition during fuel and chemicals production in microbial systems such as Escherichia coli and Saccharomyces cerevisiae. We focus on engineering robust hosts for metabolite production, and we develop strategies that are universally useful, for microbial host engineering. We also engineer microbes towards catabolism of environmental pollutants, where we address bioremediation of hydrocarbons, organophosphate and phosphonate compounds. We are part of the ENIGMA project where we take comprehensive systems biology approaches to examine bacterial signaling in ubiquitous and environmentally important, sulfate and metal reducing bacteria. We also study rainfall events and signaling in the fabulous cyanobacteria that dominate the desert soil crusts on our planet.


About Aindrila

Personal tools