OHSU Knight CI Genomic Instability Interest Group: Difference between revisions

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=Announcements=
{{Template:Oregon Cancer Institute Research Groups}}
 
*'''Once you login, you can click on "edit" and copy our format and replace text with your own information.  Or, here is more [[Help:Contents| Help to create, edit and format pages]].'''
*Comments? Start with '''<font color="red"><nowiki>~~~~</nowiki></font>''', your automatic wiki-signature will appear after save, like this : [[User:Hoatlinm|Maureen]] 23:10, 18 August 2006 (EDT)


==Join the Genomic Instability Google Group==
Visit the [http://groups.google.com/group/giigi GIiGI google group] pages to join our mailing list for more information.


==Objectives of the OHSU DNA R3 Club==
==Objectives of the OHSU DNA R3 Club==
Cross-departmental workshop composed of students, postdocs, and faculty with shared interest in basic principles and emerging discoveries in DNA replication, recombination and repair. The goal of the meetings is to establish a challenging and interactive venue that will advance understanding of our individual projects and encourage collaborations.
Cross-departmental workshop composed of students, postdocs, and faculty with shared interest in basic principles and emerging discoveries in genomic instability, DNA replication, recombination and repair. The goals of the meetings and this wiki:
* Establish a challenging and interactive cross-departmental focus group that will advance understanding of our individual projects and encourage collaborations.
*Provide students and postdocs with training and interactions with faculty interested in the R3 Topics


==Time, Location & Logistics==
Want to join? All are invited! 
The meetings are held in MRB 6th floor conference room (MRB 634), typically on the first and last Tuesdays of the month at 9:30 am. This way, nearly every week will have "DNA Tuesday". For those of you who are new, the second Tuesday is when the Fanconi anemia program project team meets, and the third Tuesday is reserved for the DNA repair videoconference for the [http://tango01.cit.nih.gov/sig/home.taf?_function=main&SIGInfo_SIGID=32 DNA Repair Interest Group at NIH]. NIH videoconference is held at 9:30 am in the CROET 2nd floor conference room (BSAC 2501M).


Details: Begins at 9:30 am sharp. '''Speakers please arrive in MRB 634 by 9:15 am for set up.'''  To allow time for extensive discussion plan to speak for a total of 40 min. Meeting ends officially at 10:30 am but many participants typically stay longer for lively discussion. Send your slides to Maureen after you present so they can be posted on this site.


==Member Labs and Affiliations==
==Member Labs and Affiliations==


[http://www.ohsu.edu/biochem/faculty/faculty.cfm?facultyID=29 Hoatlin Lab] Biochemistry and Molecular Biology (BMB)
[http://openwetware.org/wiki/Hoatlin_Lab Hoatlin Lab] Biochemistry and Molecular Biology (BMB)


[http://www.ohsu.edu/biochem/faculty/faculty.cfm?facultyID=28 Thayer Lab] BMB
[http://openwetware.org/wiki/Thayer_Lab Thayer Lab] BMB
 
[http://www.ohsu.edu/biochem/faculty/faculty.cfm?facultyID=7 Lu Lab] BMB


[http://www.ohsu.edu/croet/faculty/lloyd/|  Lloyd Lab] Center for Research on Occupational and Environmental Toxicology (CROET)
[http://www.ohsu.edu/croet/faculty/lloyd/|  Lloyd Lab] Center for Research on Occupational and Environmental Toxicology (CROET)


[http://www.ohsu.edu/genetics/liskay/index.html| Liskay Lab] Molecular and Medical Genetics (MMG)
[http://www.ohsu.edu/ohsuedu/academic/som/basicscience/genetics/faculty/liskay.cfm Liskay Lab] Molecular and Medical Genetics (MMG)


[http://www.ohsu.edu/croet/faculty/mccullough/index.html|  McCullough Lab] CROET & MMG
[http://www.ohsu.edu/croet/faculty/mccullough/index.html|  McCullough Lab] CROET & MMG


[http://www.ohsu.edu/genetics/grompe/index.html| Grompe Lab] MMG
[http://www.ohsu.edu/ohsuedu/academic/som/basicscience/genetics/faculty/grompe-research.cfm Grompe Lab] MMG


[http://www.ohsu.edu/croet/faculty/turker/|  Turker Lab] CROET
[http://www.ohsu.edu/croet/faculty/turker/|  Turker Lab] CROET
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[http://www.ohsuhealth.com/doctors/profile.cfm?doctorid=05FA7FBF-E844-6736-85BB4492D690E226  Kurre Lab] Pediatrics
[http://www.ohsuhealth.com/doctors/profile.cfm?doctorid=05FA7FBF-E844-6736-85BB4492D690E226  Kurre Lab] Pediatrics


==R3 Schedule, Academic 2006-2007==
[http://www.heinrich-corless.net/ Mike Heinrich-Chris Corless Labs]
 
please add your guests and seminars of interest to the DNA R3 Club schedule below for planning, or email Maureen [hoatlinm AT ohsu dot edu] with details and I will post.
[http://web.pdx.edu/~justc/  Courcelle Lab, Portland State University, Department of Biology]
*'''Note:''' PDF reprints are provided below within the context of [http://www.copyright.gov/fls/fl102.html fair use]. Please obtain copies from the publisher if appropriate.
 
[http://www.biology.pdx.edu/people/singer.php Singer Lab, Portland State University, Department of Biology]


{| border="1"
[http://academic.reed.edu/biology/professors/jshampay/#RES Shampay Lab, Reed College, Dept of Biology]
!width="75"|Date
 
!width=175"|Event
 
!width="225"|Links & Refs
===Events of DNA R3 Interest 2008-2009===
!width="150"| Discussion Leader/Snack Provider
*July 21, 2008.  CROET, noon seminar. [http://www.biochem.emory.edu/labs/medpwd/ Paul Doetsch], Emory U. (Hosts: [http://www.ohsu.edu/croet/faculty/mccullough/index.html| Amanda McCullough] and [http://www.ohsu.edu/croet/faculty/lloyd/| Stephen Lloyd], CROET).
!width="200"|Comments 
*August 12, 2008. [http://openwetware.org/wiki/Thayer_Lab Matt Thayer] will give an update of the Salk Replication and Genome Integrity Meeting during the Hoatlin lab meeting in MRB 634 at 2:30pm.
|-
*Sept 11, 2008. CROET, noon seminar. [http://rex.nci.nih.gov/RESEARCH/basic/lmc/khk.htm Dr. Ken Kraemer], NIH. Title: Xeroderma pigmentosum and trichothiodystrophy: Defective DNA Repair, Abnormal Development or Both? (Hosts: [http://www.ohsu.edu/croet/faculty/mccullough/index.html| Amanda McCullough] and [http://www.ohsu.edu/croet/faculty/lloyd/| Stephen Lloyd], CROET).
| Sept 5|| ''Conf. Review'' :[http://www.salk.edu/events/meetings/DNA_aug06.php Salk DNA Replication and Genome Integrity] ||  || Dan Pankratz ||
*September 29, 2008. CROET noon seminar BSAC 3524.  [http://southmed.usouthal.edu/com/scb/wilson.htm Dr Glenn Wilson], U. South Alabama. "Targeting DNA Repair Fusion Proteins to Mitochondria to Enhance Islet Transplantation"
|-
:(Host: [http://www.ohsu.edu/croet/faculty/lloyd/| Stephen Lloyd], CROET)
| '''Monday Sept 18**'''||''Seminar'' [http://www.mbb.yale.edu/fl/fl_p_sung.htm Patrick Sung]|| [[Media:sung-JBC.pdf|Sung-JBC]]; [[Media:sung-nature.pdf|Sung-nature]] || || CROET (host: Amanda M.) CROET room 3524 at noon  
*Oct 1, 2008. 4:00 p.m. in Vollum M-1441. Mu-Shui Dai, Indiana University. A Dual Role for Ribosomal Proteins in Cell Cycle Control: Activation of p53 and Inhibition of c-Myc.
|-
*Oct 7, 2008. Buffet lunch and special seminar by Prof. Ody C.M. Sibon from the Department of Cell Biology/Section Radiation and Stress Cell Biology at the University of Groningen, University Medical Center Groningen, The Netherlands.  Lunch at 11:45 p.m. Mac Hall 2136, followed by Dr. Sibon’s talk, entitled “A Forward Genetic Screen in Drosophila Identified Unexpected Genes Involved in DNA Damage Responses,” (Host: Susan Hayflick, MMG)
|Sept 19|| ''Seminar'':[http://www.pharm.emory.edu/fu-h.htm Haian Fu]|| || ||BMB (host: Hua Lu) M1441 12N
*Oct 28, 2008, NIH Videoconference, CROET 2nd floor conference room (BSAC 2501M), 9:30 AM. Dr. Kyungjae Myung, NHGRI "Evolutionary conserved pathways suppress genomic instability" (Origin: NIH, Bethesda) 
|-
*Oct. 28, 2008. BMB Noon Seminar. Vollum 1441. [http://irm.ucsf.edu/Faculty/bios/PAGES/panning.aspx Barbara Panning] (Host: [http://openwetware.org/wiki/Thayer_Lab Matt Thayer] BMB)
|Oct 3|| ''Workshop'' : Replication bypass of DNA Interstrand Crosslinks || [[Media:Sarkar.pdf|Sarkar]]; [[Media:WuPDF.pdf|Wu]]; [[Media:Zheng.pdf|Zheng]] ||[http://www.ohsu.edu/croet/faculty/lloyd/ Stephen Lloyd]||
*Nov. 11, 2008. BMB Noon Seminar. Vollum 1441. [http://chgr.mgh.harvard.edu/chess/index.shtml Andrew Chess] (Host: [http://openwetware.org/wiki/Thayer_Lab Matt Thayer] BMB)
|-
*Nov 18, 2008. NIH Videoconference, CROET 2nd floor conference room (BSAC 2501M), 9:30 AM. David Ferguson,University of Michigan. Roles of mammalian Mre11 in genomic stability and development (Origin: Univ of Michigan)
|Nov 7||Conf Review: Fanconi Meeting***Postponed***TBA|| || [[Maureen_Hoatlin| Maureen]]||
*Dec 16, 2008. NIH Videoconference, CROET 2nd floor conference room (BSAC 2501M), 9:30 AM. Tanya Paull. Univ of Texas. DNA end processing by Mre11/Rad50 complexes (Host: Smithville)
|-
*Jan 20, 2009. NIH Videoconference, CROET 2nd floor conference room (BSAC 2501M), 9:30 AM. Dan Yarosh. AGI Dermatics. The Intercellular Communication of DNA Damage its Repair. (Host: Brookhaven)
|Dec 5|| Chromatin Remodeling and DNA Repair  [[Media:R3meeting-120506.ppt|slides]] || [[Media:Chromatin DNA damage.pdf| review Chromatin-DNA damage]]; [[Media:Tsukuda-nov2005.pdf| Tsukuda-nov2005]]; [[Media:Histone_code-DNA_repair_review.pdf| Histone code in DNA repair]] || Igor Landais (Hoatlin Lab)||
*Feb 17, 2009. BMB Noon Seminar. Vollum 1441. [http://www.aecom.yu.edu/dmb/melnick.htm Ari Melnick] (Host: [[Hoatlin_Lab|Maureen Hoatlin]], BMB)
|-
*Feb 17, 2009. NIH Videoconference, CROET 2nd floor conference room (BSAC 2501M), 9:30 AM. Marilyn Diaz . NIEHS - Rev3-mediated mutagenesis in mammalian cells (Origin: NIEHS)
|Jan 2|| No Meeting-Happy New Year|| || ||
*March 12, 2009. noon, PSU Science Bld II, room 223. PSU Biology Seminar. [http://www.uvm.edu/cmb/faculty_details.php?people_id=111 Susan Wallace] 10,000 lesions per cell: Dissecting the biological consequences of oxidative DNA damage , Host: Courcelle
|-
*Mar 17, 2009. NIH Videoconference, CROET 2nd floor conference room (BSAC 2501M), 9:30 AM. Tom Misteli . NCI - Spatial genome organization in the formation of translocations and DNA repair (Origin: NIH, Bethesda)
|Feb 6||''T. Weinert's BMB Seminar Preview'': "Shelterin” and “anticheckpoints” : Protecting Telomeres From DNA Damage Responses [[Media:DanSlides.pdf‎|Slides]]||[[Media:Admire.pdf|Admire A et al. Genes Dev. 2006; 20(2):159-173]] and [[Media:Michelson.pdf|Michelson RJ et al. Genes Dev. 2005 19(21):2546-59]] || Dan Pankratz (Thayer Lab)||
*Mar. 31, 2009. BMB Noon Seminar. Vollum 1441. [https://medschool.mc.vanderbilt.edu/facultydata/php_files/part_dept/show_part.php?id3=9240 David Cortez]. (Host: [[Hoatlin_Lab|Maureen Hoatlin]], BMB)
|-
*April 30, 2009. Knight Cancer Seminar, 12 noon 14D03. [http://www.gene.com/gene/research/sci-profiles/rsrchonc/cansigtransonc/ebens/ Allen Ebens] Host : [[Hoatlin_Lab|Maureen Hoatlin]], BMB)
|Feb 27||''Seminar'': [http://bmcb.biology.arizona.edu/weinert.html Ted Weinert]|| || ||BMB (Host: Matt Thayer) Vollum M1441, 12 noon||
 
|-
==External Seminar Series==
|March 6|| || || ||
[http://www.biology.pdx.edu/seminars/ PSU Dept of Biology Seminars]
|-
 
|April 3||''Seminar'':[http://academic.reed.edu/biology/professors/jshampay/index.html Janis Shampay] ''Frog telomeres: not the end of the story'' ||  de Lange T. Genes Dev. 2005 Sep 15;19(18):2100-10. Shelterin: the protein complex that shapes and safeguards human telomeres || Hoatlin Lab ||Guest speaker from Reed College
[http://academic.reed.edu/biology/seminars.html Reed College Biology Seminars]
|-
|May 1|| BMB Seminar Preview ([http://cimprich.stanford.edu/index.html Karlene Cimprich]) || <biblio> Cortez pmid=15879550</biblio>|| Hoatlin Lab ||
|-
|May 8|| ''Seminar'': [http://cimprich.stanford.edu/index.html Karlene Cimprich]||  ||  || BMB (host Maureen H.) M1441 12N


|}
<nowiki>**</nowiki> note special time and place
*Vacation in August 2007, resumes in Sept 2007
===[[Hoatlin:Previous R3 Club Talks| Previous R3 Talks]]===
===[[Hoatlin:Previous R3 Club Talks| Previous R3 Talks]]===
===CROET Seminars===
'''Held in CROET room 3524 at noon unless otherwise noted.
*[http://www.ohsu.edu/croet/research/seminars.cfm CROET Seminar Webpage]'''


==Journal Watch==
==Journal Watch==
*[http://www.citeulike.org/group/DNAGearHeads DNAGearheads, Our new Citeulike site for DNA related articles. Let's try it]
*[http://www.connotea.org/ Connotea, Nature's version of Cite-U-Like]


==External Meetings of Interest==
==External Meetings of Interest==
For updated list see [http://www.nih.gov:80/sigs/dna-rep/ DNA Repair Interest Group web site]. Please let R3 Club know if you are going to any meeting of interest. Also, please consider giving a conference update when you get back. Email Maureen to schedule.
For updated list see [http://www.nih.gov:80/sigs/dna-rep/ DNA Repair Interest Group web site]. Please let R3 Club know if you are going to any meeting of interest. Also, please consider giving a conference update when you get back. [[Special:Emailuser/Hoatlinm|Email me through OpenWetWare]] to schedule.
 
==[[Hoatlin: OHSU R3 Club Discussion| 2006-07 OHSU R3 Club Organizational Discussion Page ]]==
Please view the discussion and add your comments
 
 
Back to [[Hoatlin Lab]]

Latest revision as of 13:38, 29 September 2013

Equipped with his five senses, man explores the universe around him and calls the adventure Science. ~Edwin Powell Hubble, The Nature of Science, 1954

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Join the Genomic Instability Google Group

Visit the GIiGI google group pages to join our mailing list for more information.

Objectives of the OHSU DNA R3 Club

Cross-departmental workshop composed of students, postdocs, and faculty with shared interest in basic principles and emerging discoveries in genomic instability, DNA replication, recombination and repair. The goals of the meetings and this wiki:

  • Establish a challenging and interactive cross-departmental focus group that will advance understanding of our individual projects and encourage collaborations.
  • Provide students and postdocs with training and interactions with faculty interested in the R3 Topics


Member Labs and Affiliations

Hoatlin Lab Biochemistry and Molecular Biology (BMB)

Thayer Lab BMB

Lloyd Lab Center for Research on Occupational and Environmental Toxicology (CROET)

Liskay Lab Molecular and Medical Genetics (MMG)

McCullough Lab CROET & MMG

Grompe Lab MMG

Turker Lab CROET

Kurre Lab Pediatrics

Mike Heinrich-Chris Corless Labs

Courcelle Lab, Portland State University, Department of Biology

Singer Lab, Portland State University, Department of Biology

Shampay Lab, Reed College, Dept of Biology


Events of DNA R3 Interest 2008-2009

  • July 21, 2008. CROET, noon seminar. Paul Doetsch, Emory U. (Hosts: Amanda McCullough and Stephen Lloyd, CROET).
  • August 12, 2008. Matt Thayer will give an update of the Salk Replication and Genome Integrity Meeting during the Hoatlin lab meeting in MRB 634 at 2:30pm.
  • Sept 11, 2008. CROET, noon seminar. Dr. Ken Kraemer, NIH. Title: Xeroderma pigmentosum and trichothiodystrophy: Defective DNA Repair, Abnormal Development or Both? (Hosts: Amanda McCullough and Stephen Lloyd, CROET).
  • September 29, 2008. CROET noon seminar BSAC 3524. Dr Glenn Wilson, U. South Alabama. "Targeting DNA Repair Fusion Proteins to Mitochondria to Enhance Islet Transplantation"
(Host: Stephen Lloyd, CROET)
  • Oct 1, 2008. 4:00 p.m. in Vollum M-1441. Mu-Shui Dai, Indiana University. A Dual Role for Ribosomal Proteins in Cell Cycle Control: Activation of p53 and Inhibition of c-Myc.
  • Oct 7, 2008. Buffet lunch and special seminar by Prof. Ody C.M. Sibon from the Department of Cell Biology/Section Radiation and Stress Cell Biology at the University of Groningen, University Medical Center Groningen, The Netherlands. Lunch at 11:45 p.m. Mac Hall 2136, followed by Dr. Sibon’s talk, entitled “A Forward Genetic Screen in Drosophila Identified Unexpected Genes Involved in DNA Damage Responses,” (Host: Susan Hayflick, MMG)
  • Oct 28, 2008, NIH Videoconference, CROET 2nd floor conference room (BSAC 2501M), 9:30 AM. Dr. Kyungjae Myung, NHGRI "Evolutionary conserved pathways suppress genomic instability" (Origin: NIH, Bethesda)
  • Oct. 28, 2008. BMB Noon Seminar. Vollum 1441. Barbara Panning (Host: Matt Thayer BMB)
  • Nov. 11, 2008. BMB Noon Seminar. Vollum 1441. Andrew Chess (Host: Matt Thayer BMB)
  • Nov 18, 2008. NIH Videoconference, CROET 2nd floor conference room (BSAC 2501M), 9:30 AM. David Ferguson,University of Michigan. Roles of mammalian Mre11 in genomic stability and development (Origin: Univ of Michigan)
  • Dec 16, 2008. NIH Videoconference, CROET 2nd floor conference room (BSAC 2501M), 9:30 AM. Tanya Paull. Univ of Texas. DNA end processing by Mre11/Rad50 complexes (Host: Smithville)
  • Jan 20, 2009. NIH Videoconference, CROET 2nd floor conference room (BSAC 2501M), 9:30 AM. Dan Yarosh. AGI Dermatics. The Intercellular Communication of DNA Damage its Repair. (Host: Brookhaven)
  • Feb 17, 2009. BMB Noon Seminar. Vollum 1441. Ari Melnick (Host: Maureen Hoatlin, BMB)
  • Feb 17, 2009. NIH Videoconference, CROET 2nd floor conference room (BSAC 2501M), 9:30 AM. Marilyn Diaz . NIEHS - Rev3-mediated mutagenesis in mammalian cells (Origin: NIEHS)
  • March 12, 2009. noon, PSU Science Bld II, room 223. PSU Biology Seminar. Susan Wallace 10,000 lesions per cell: Dissecting the biological consequences of oxidative DNA damage , Host: Courcelle
  • Mar 17, 2009. NIH Videoconference, CROET 2nd floor conference room (BSAC 2501M), 9:30 AM. Tom Misteli . NCI - Spatial genome organization in the formation of translocations and DNA repair (Origin: NIH, Bethesda)
  • Mar. 31, 2009. BMB Noon Seminar. Vollum 1441. David Cortez. (Host: Maureen Hoatlin, BMB)
  • April 30, 2009. Knight Cancer Seminar, 12 noon 14D03. Allen Ebens Host : Maureen Hoatlin, BMB)

External Seminar Series

PSU Dept of Biology Seminars

Reed College Biology Seminars

Previous R3 Talks

CROET Seminars

Held in CROET room 3524 at noon unless otherwise noted.

Journal Watch

External Meetings of Interest

For updated list see DNA Repair Interest Group web site. Please let R3 Club know if you are going to any meeting of interest. Also, please consider giving a conference update when you get back. Email me through OpenWetWare to schedule.

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