Odom:Publications

Selected Publications

PDF reprints are provided below within the context of fair use. Please obtain copies from the publisher if appropriate.

Control of Pancreas and Liver Gene Expression by HNF Transcription Factors
Science, 27 February 2004
D.T. Odom, N. Zizlsperger, D. Gordon, G. W. Bell, N.J. Rinaldi, H. Murray, T. Volkert, J. Schreiber, A. Rolfe, D. Gifford, E. Fraenkel, G.I. Bell, R.A. Young
URL, Comment, PDF reprint

Genome-wide analysis of CREB occupancy, phosphorylation, and target gene activation in human tissues
Proceedings of the National Academy of Sciences USA, 22 March 2005
X. Zhang, D.T. Odom, S.H. Koo, M. Conkright, G. Canettieri, J. Best, H. Chen, R. Jenner, E. Herbolsheimer, E. Jacobsen, S. Kadam, J. Ecker, B. Emerson, J. Hogenesch, T. Unterman, R. Young, M. Montminy
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Core Transcriptional Regulatory Circuitry in Human Hepatocytes
Molecular Systems Biology, 2 May 2006
D.T. Odom, R. Dowell, E. Jacobsen, L. Nekludova, P. Rolfe, T. Danford, D. Gifford, E. Fraenkel, G. Bell, R. A. Young
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Tissue-Specific Transcriptional Regulation has Diverged Significantly between Human and Mouse
Submitted
D.T. Odom, R. D. Dowell, E. S. Jacobsen, W. M. Gordon, T. W. Danford, K. MacIsaac, P. A. Rolfe, C. M. Conboy, D. K. Gifford, E. Fraenkel

COMPLETE PUBLICATION LIST:

D. T. Odom†, R. Dowell†, E. Jacobsen, W. Gordon, T. Danford, K. MacIsaac, P. Rolfe, C. Conboy, D. Gifford, E. Fraenkel. “Tissue-Specific Transcriptional Regulation has Diverged Significantly between Human and Mouse,” Manuscript Submitted. †Co-first

T. Palomero, W. Lim, D. T. Odom, M. Sulis, P. Real, A. Margolin, K. Barnes, J. O’Neil, D. Neuberg, A. Weng, J. Aster, F. Sigaux, J. Soulier, A. Look, R. Young, A. Califano, A. Ferrando. “NOTCH1 directly regulates c-MYC and activates a feed-forward-loop transcriptional network promoting leukemic cell growth,” Proceedings of the National Academy of Sciences USA 103 (2006) 18261-18266.

F. C. Wardle, D. T. Odom, G. Bell, B. Yuan, T. Danford, E. Wiellette, E. Herbolsheimer, H. Sive, R. Young, J. Smith. “Zebrafish promoter microarrays identify actively transcribed embryonic genes,” Genome Biology 7 (2006) R71.

T. Palomero, D. T. Odom, J. O’Neil, A. Ferrando, A. Margolin, D. Neuberg, S. Winter, R. Larson, R. Young, A. Look. “Transcriptional Regulatory Networks Downstream of TAL1/SCL in T-cell Acute Lymphoblastic Leukemia,” Blood 108 (2006) 986-992.

D. T. Odom, R. Dowell, E. Jacobsen, L. Nekludova, P. Rolfe, T. Danford, D. Gifford, E. Fraenkel, G. Bell, R. A. Young. “Core Transcriptional Regulatory Circuitry in Human Hepatocytes,” Mol. Syst. Biol. (2006) E1.

T. Lee, R. Jenner, L. Boyer, M. Guenther, S. Levine, R. Kumar, B. Chevalier, S. Johnstone, M. Cole, K. Isono, H. Koseki, T. Fuchikami, K. Abe, H. Murray, J. Zucker, B. Yuan, G. Bell, E. Herbolsheimer, N. Hannett, K. Sun, D. T. Odom, A. Otte, T. Volkert, D. Bartel1, D. Melton, D. Gifford, R. Jaenisch R. Young. “Control of Developmental Regulators by Polycomb in Human Embryonic Stem Cells,” Cell 125 (2006) 301.

P. Scacheri, S. Davis, D. T. Odom, G.. Crawford, S. Perkins, M. Halawi, S. Agarwal, S. Marx, A. Spiegel, P. Meltzer, F.. Collins. “Genome-Wide Analysis of Menin Binding Provides Insights to MEN1 Tumorigenesis,” PLoS-Genetics 2 (2006) e51.

K. MacIsaac, D. Gordon, L. Nekludova, D. T. Odom, D. Gifford, R. Young, E. Fraenkel, “A Hypothesis Based Approach for Identifying the Binding Specificity of Regulatory Proteins from Chromatin Immunoprecipitation Data,” Bioinformatics, 22 (2006) 423-429.

X. Zhang, D. T. Odom, S.-H. Koo, M. Conkright, G. Canettieri, J. Best, H. Chen, R. Jenner, E. Herbolsheimer, E. Jacobsen, S. Kadam, J. Ecker, B. Emerson, J. Hogenesch, T. Unterman, R. Young, M. Montminy. “Genome-wide analysis of CREB occupancy, phosphorylation, and target gene activation in human tissues,” Proceedings of the National Academy of Sciences USA 102 (2005) 4459-4464.

D. T. Odom, N. Zizlsperger, D. Gordon, G. W. Bell, N. J. Rinaldi, H. Murray, T. Volkert, J. Schreiber, A. Rolfe, D. Gifford, E. Fraenkel, G. I. Bell, R. A. Young. “Control of Pancreas and Liver Gene Expression by HNF Transcription Factors,” Science 303 (2004) 1378-1381.

T. I. Lee†, N. J. Rinaldi†, F. Robert†, D. T. Odom, Z. Bar-Joseph, G. Gerber, N. Hannett, C. Harbison, C. Thompson, I. Simon, J. Zeitlinger, E. Jennings, H. Murray, D. Gordon, B. Ren, J. Wyrick, J. Tagne, T. Volkert, E. Fraenkel, D. Gifford, R. A. Young. "Transcriptional Regulatory Networks in Saccharomyces cerevisiae," Science 298 (2002) 799-805. †Co-first

D. T. Odom, J. K. Barton. "Long Range Oxidation of Guanines in RNA/DNA Hybrid Duplexes," Biochemistry 40 (2001) 8727-8737.

D. T. Odom, E. A. Dill, J. K. Barton. "Charge Transport Through DNA Four-Way Junctions," Nucleic Acids Research 29 (2001) 2026-2033.

T. T. Williams, D. T. Odom, J. K. Barton. "Variations in DNA Charge Transport with Nucleotide Composition and Sequence,” J. Am. Chem. Soc. 122 (2000) 9048-9049.

D. A. Vicic, D. T. Odom, M. E. Nunez, D. A. Gianolio, L. W. McLaughlin, J. K. Barton. "Oxidative Repair of a Thymine Dimer in DNA from a Distance by a Covalently Linked Organic Intercalator," J. Am. Chem. Soc. 122 (2000) 8603-8611.

D. T. Odom, E. A. Dill, J. K. Barton. "Robust Charge Transport in DNA Double Crossover Assemblies," Chemistry & Biology 7 (2000) 475-481.

D. T. Odom, C. J. Gramer, S. A. Hildebrand, S. E. Sherman. "Synthesis and Characterization of Magnesium and Zinc Complexes of 1,4,7-Triazacyclononane-N-Acetate. Potential Models for the Active Site of RuBisCo," Inorganica Chimica Acta 247 (2000) 404-411.

K. E. Erkkila, D. T. Odom, J. K. Barton. "Recognition and Reaction of Metallointercalators with DNA," Chemical Reviews 99 (1999) 2777-2796.

D. T. Odom, C. S. Parker, J. K. Barton. "Site-Specific Inhibition of Transcription Factor Binding to DNA by a Metallointercalator," Biochemistry 38 (1999) 5155-5163.