OpenSourceMalaria:Links: Difference between revisions
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===Outputs of the Open Source Malaria Project=== | ===Outputs of the Open Source Malaria Project=== | ||
[https://www.ebi.ac.uk/chembl/malaria/doc/inspect/CHEMBL2113921 First published project data set] | Open Source Drug Discovery – A Limited Tutorial, M. N. Robertson, P. M. Ylioja, A. E. Williamson, M. Woelfle, M. Robins, K. A. Badiola, P. Willis, P. Olliaro, T. N. C. Wells and M. H. Todd, ''Parasitology'' '''2014''', ''141'', 148-157 [http://dx.doi.org/10.1017/S0031182013001121 Paper] [http://www.altmetric.com/details.php?domain=journals.cambridge.org&citation_id=1717228 Altmetric Data]<br> | ||
[https://www.ebi.ac.uk/chembl/malaria/doc/inspect/CHEMBL2113921 First published project data set]<br> | |||
[https://github.com/OpenSourceMalaria/OSM_compounds Master List of Chemical Compounds made]<br> | |||
===Non-publication/data Outputs=== | ===Non-publication/data Outputs=== | ||
'''Open Source Drug Discovery for Malaria Conference, Sydney, February 2012''' ([http://sydney.edu.au/news/science/397.html?newscategoryid=63&newsstoryid=8775 | |||
Planning notes: [[OSDDMalaria:OSDD Malaria Meeting Sydney 2012 | OSDD Malaria Meeting Sydney 2012]].<br> | '''Open Source Drug Discovery for Malaria Conference, Sydney, February 2012''' (Articles about this meeting: [http://sydney.edu.au/news/science/397.html?newscategoryid=63&newsstoryid=8775 1], [http://nsaunders.wordpress.com/2012/05/11/my-day-out-at-osddmalaria/ 2])<br> | ||
Meeting Summary, including links to talks, [http://www.thesynapticleap.org/node/390 here].<br> | *Planning notes: [[OSDDMalaria:OSDD Malaria Meeting Sydney 2012 | OSDD Malaria Meeting Sydney 2012]].<br> | ||
*Meeting Summary, including links to talks, [http://www.thesynapticleap.org/node/390 here].<br> | |||
[http://malaria.ourexperiment.org/data/files/10840/OSM%20Newsletter%20April%202014.pdf April 2014 Newsletter]<br> | |||
[[Short guide to using the Electronic Lab Notebook]]<br> | |||
[https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/496 May 2017 Flyer made for conference distribution] | |||
===Articles/Features about Open Source Malaria=== | ===Articles/Features about Open Source Malaria=== | ||
[https://youtu.be/hU-4WHeeyss Alice's TedX talk, "Breaking Good"] | |||
[http://dx.doi.org/10.1017/epi.2013.33 Paper] from December 2013 describing OSM, comparing it with other initiatives such as the Bradner lab and containing a discussion of other meta-aspects of open drug discovery<br> | |||
[http://www.mmv.org/newsroom/news/potential-new-class-antimalarials-now-open-source Launch of Series 4]<br> | |||
[http://www.mmv.org/partnering/interviews/drug-discovery-difference MMV interview with Mat Todd about open drug discovery]<br> | |||
[http://www.highlighthealth.org/open-science/open-source-drug-discovery-for-malaria/ Article by Walter Jessen on Highlight Health 2.0]<br> | [http://www.highlighthealth.org/open-science/open-source-drug-discovery-for-malaria/ Article by Walter Jessen on Highlight Health 2.0]<br> | ||
[http://www.guardian.co.uk/global-development-professionals-network/2013/apr/29/malaria-innovations-top-ten-world-malaria-day Guardian Innovations in Malaria]<br> | |||
[https://blog.cloudcitydevelopment.com/2013/07/23/open-source-the-bio-lab-make-a-difference-in-malaria-research/ Development of the Website]<br> | |||
[http://intermolecular.wordpress.com/2013/07/15/an-example-of-open-source-drug-discovery/ An Example of Open Source Drug Discovery]<br> | |||
[http://www.guardian.co.uk/global-development-professionals-network/2013/jul/24/open-source-drug-discovery-research Feature in the Guardian about open source drug discovery for malaria] with [http://www.theguardian.com/global-development-professionals-network/2013/aug/14/letters-should-molecules-be-patented separate discussion] of the terminology "open source" when referring to drug discovery.<br> | |||
[http://www.flickr.com/photos/97823772@N02/11819002925/ Sketch] of a talk Mat Todd gave about the project at the Sanger Institute/EBI in January 2014.<br> | |||
The project is [http://www.thesaturdaypaper.com.au/life/2014/03/08/freeing-the-business-science/1394197200#.UxpFBF7byY4 the subject of a feature article] in the new Australian newspaper, The Saturday Paper.<br> | |||
OSM is featured in International Innovation's issue on [http://www.internationalinnovation.com/build/wp-content/uploads/2014/07/p49-51_Matthew_Todd_Intl_Innovation_129_Research_Media.pdf Parasites of Poverty] alongside other developments from WHO/TDR and MMV. (file also archived [http://malaria.ourexperiment.org/osdd_malaria_shared/14665/Feature_on_OSM_in_International_Innovation_Parasites_of_Poverty_2014.html here]). | |||
[http://www.sydgram.nsw.edu.au/files/sgsmagazine/SGSmagazine_iss1_Winter2015.pdf Article] (PDF, p36) in the winter newsletter of Sydney Grammar describing their involvement in the Open Source Malaria Consortium's research. The boys did some real research that can be read about in [http://figshare.com/articles/Open_Source_Malaria_2015/1513845 their reports]. | |||
===General Resources for | ===General Resources for Malaria=== | ||
[http://www.worldcommunitygrid.org/research/gfam/overview.do The Go Fight Against Malaria Scripps/IBM computing project]<br> | [http://www.worldcommunitygrid.org/research/gfam/overview.do The Go Fight Against Malaria Scripps/IBM computing project]<br> | ||
[http://www.thesynapticleap.org/malaria/community The Synaptic Leap malaria community]<br> | [http://www.thesynapticleap.org/malaria/community The Synaptic Leap malaria community]<br> | ||
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[http://usefulchem.wikispaces.com/malaria The Usefulchem Malaria Project]<br> | [http://usefulchem.wikispaces.com/malaria The Usefulchem Malaria Project]<br> | ||
=== | ===Papers Most Relevant to Open Source Malaria=== | ||
[http://dx.doi.org/10.1021/ml200135p Original description of the GSK TCAMS set]<br> | [http://dx.doi.org/10.1021/ml200135p Original description of the GSK TCAMS set]<br> | ||
[http://pubs.acs.org/doi/abs/10.1021/ml2001517 Evaluation of GSK TCMAS Cyclopropyl Carboxamides]<br> | [http://pubs.acs.org/doi/abs/10.1021/ml2001517 Evaluation of GSK TCMAS Cyclopropyl Carboxamides]<br> | ||
[http://www.cell.com/chemistry-biology/retrieve/pii/S1074552112000178#Summary Article calling for more collaboration on global phenotypic screening]<br> | [http://www.cell.com/chemistry-biology/retrieve/pii/S1074552112000178#Summary Article calling for more collaboration on global phenotypic screening]<br> | ||
[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0062906 PLoS ONE paper on MMV's Malaria Box] | |||
[http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0117150 An Open Source Business Model for Malaria] | |||
===Miscellaneous Malaria-related Links=== | |||
[http://www.nytimes.com/2013/07/16/science/a-low-tech-mosquito-deterrent.html?_r=1& Electric fans for mosquito control?]<br> | |||
Promising series: The [http://pubs.acs.org/doi/abs/10.1021/jm401760c 2,4-diaminothienopyrimidines] possessing a core similar to OSM Series 3. | |||
Latest revision as of 09:02, 19 June 2017
Outputs of the Open Source Malaria Project
Open Source Drug Discovery – A Limited Tutorial, M. N. Robertson, P. M. Ylioja, A. E. Williamson, M. Woelfle, M. Robins, K. A. Badiola, P. Willis, P. Olliaro, T. N. C. Wells and M. H. Todd, Parasitology 2014, 141, 148-157 Paper Altmetric Data
First published project data set
Master List of Chemical Compounds made
Non-publication/data Outputs
Open Source Drug Discovery for Malaria Conference, Sydney, February 2012 (Articles about this meeting: 1, 2)
- Planning notes: OSDD Malaria Meeting Sydney 2012.
- Meeting Summary, including links to talks, here.
Short guide to using the Electronic Lab Notebook
May 2017 Flyer made for conference distribution
Articles/Features about Open Source Malaria
Alice's TedX talk, "Breaking Good"
Paper from December 2013 describing OSM, comparing it with other initiatives such as the Bradner lab and containing a discussion of other meta-aspects of open drug discovery
Launch of Series 4
MMV interview with Mat Todd about open drug discovery
Article by Walter Jessen on Highlight Health 2.0
Guardian Innovations in Malaria
Development of the Website
An Example of Open Source Drug Discovery
Feature in the Guardian about open source drug discovery for malaria with separate discussion of the terminology "open source" when referring to drug discovery.
Sketch of a talk Mat Todd gave about the project at the Sanger Institute/EBI in January 2014.
The project is the subject of a feature article in the new Australian newspaper, The Saturday Paper.
OSM is featured in International Innovation's issue on Parasites of Poverty alongside other developments from WHO/TDR and MMV. (file also archived here).
Article (PDF, p36) in the winter newsletter of Sydney Grammar describing their involvement in the Open Source Malaria Consortium's research. The boys did some real research that can be read about in their reports.
General Resources for Malaria
The Go Fight Against Malaria Scripps/IBM computing project
The Synaptic Leap malaria community
Mendeley group.
The Usefulchem Malaria Project
Papers Most Relevant to Open Source Malaria
Original description of the GSK TCAMS set
Evaluation of GSK TCMAS Cyclopropyl Carboxamides
Article calling for more collaboration on global phenotypic screening
PLoS ONE paper on MMV's Malaria Box
An Open Source Business Model for Malaria
Electric fans for mosquito control?
Promising series: The 2,4-diaminothienopyrimidines possessing a core similar to OSM Series 3.
