OpenWetWare:Presentations/NCI-ICBP
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< OpenWetWare:Presentations(Difference between revisions)
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=Solution: OpenWetWare= | =Solution: OpenWetWare= | ||
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# ''Easy and collaborative content generation'' | # ''Easy and collaborative content generation'' | ||
| - | #'' | + | # ''Community discourse'' |
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=Labs on OpenWetWare= | =Labs on OpenWetWare= | ||
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=Integrating OpenWetWare into research= | =Integrating OpenWetWare into research= | ||
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=Dysfunctionality of Model Publishing= | =Dysfunctionality of Model Publishing= | ||
[[Image:Icbp-talk-pyramid.png]] | [[Image:Icbp-talk-pyramid.png]] | ||
| + | '''figure: Ty Thomson''' | ||
</div> | </div> | ||
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=Systematization and Data Standards= | =Systematization and Data Standards= | ||
<html><img src="http://www.fotosearch.com/thumb/ICL/ICL154/BIM_116.jpg"</img></html> | <html><img src="http://www.fotosearch.com/thumb/ICL/ICL154/BIM_116.jpg"</img></html> | ||
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| + | * Standards for models | ||
| + | ** MIRIAM - Minimum Information Requested in the Annotation of Biochemical Models | ||
| + | ** SBML - Systems Biology Markup Language | ||
* Communicating with computers, not people | * Communicating with computers, not people | ||
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=YeastPheromoneModel.org= | =YeastPheromoneModel.org= | ||
[[Image:Yeastpheromonemodel reaction page.png]] | [[Image:Yeastpheromonemodel reaction page.png]] | ||
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To be integrated into OWW | To be integrated into OWW | ||
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| + | Part of a larger workflow:<br> | ||
| + | [[Image:OverallWorkflow.png]] | ||
</div> | </div> | ||
Current revision
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OpenWetWareA wiki for capturing and sharing biological knowledgeReshma P. Shetty and Jeremy Muhlich |
Systematization and Data Standards
- Standards for models
- MIRIAM - Minimum Information Requested in the Annotation of Biochemical Models
- SBML - Systems Biology Markup Language
- Communicating with computers, not people
- Rigid, one-way "conversation"
Agile Informatics effort
Wiki-based model documentation
with Brian Joughin, MIT/ICBP
To be integrated into OWW
Part of a larger workflow:
