OpenWetWare:Presentations/NCI-ICBP: Difference between revisions
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=Solution: OpenWetWare= | =Solution: OpenWetWare= | ||
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# ''Easy and collaborative content generation'' | # ''Easy and collaborative content generation'' | ||
#'' | # ''Community discourse'' | ||
|} | |} | ||
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=Labs on OpenWetWare= | =Labs on OpenWetWare= | ||
[ | [[Image:SilverLabhomepage.png|800px]] | ||
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=Integrating OpenWetWare into research= | =Integrating OpenWetWare into research= | ||
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<div class="slide"> | <div class="slide"> | ||
=Examining Communication= | =Examining Communication= | ||
'''Ethnomethodology:''' | |||
A sociological discipline which focuses on the ways in which people make sense of their world, display this understanding to others, and produce the mutually shared social order in which they live. ''(Wikipedia)'' | |||
'''Discourse Analysis''' | |||
</div> | </div> | ||
<div class="slide"> | <div class="slide"> | ||
=Dysfunctionality of Model Publishing= | |||
[[Image:Icbp-talk-pyramid.png]] | [[Image:Icbp-talk-pyramid.png]] | ||
'''figure: Ty Thomson''' | |||
</div> | </div> | ||
<div class="slide"> | <div class="slide"> | ||
=Systematization and Data Standards= | |||
<html><img src="http://www.fotosearch.com/thumb/ICL/ICL154/BIM_116.jpg"</img></html> | |||
* Standards for models | |||
** MIRIAM - Minimum Information Requested in the Annotation of Biochemical Models | |||
** SBML - Systems Biology Markup Language | |||
* Communicating with computers, not people | |||
* Rigid, one-way "conversation" | |||
</div> | </div> | ||
<div class="slide"> | <div class="slide"> | ||
= | =Literate Programming= | ||
Donald Knuth, 1981 | |||
Write programs primarily for humans, not computers | |||
</div> | </div> | ||
<div class="slide"> | <div class="slide"> | ||
= | =YeastPheromoneModel.org= | ||
''Ty Thomson, MIT'' | |||
[[Image:Yeastpheromonemodel home page.png]] | |||
</div> | |||
<div class="slide"> | |||
=YeastPheromoneModel.org= | |||
[[Image:Yeastpheromonemodel reaction page.png]] | |||
</div> | </div> | ||
<div class="slide"> | <div class="slide"> | ||
= | =80-20 Rule / Pareto Principle= | ||
[[Image:Pareto.png]] | |||
</div> | |||
<div class="slide"> | |||
=How do we communicate the final 20% ?= | |||
* Verbal, email, etc. | |||
* Wiki | |||
Conversation is robust, and necessary anyway | |||
</div> | </div> | ||
<div class="slide"> | <div class="slide"> | ||
=Agile Informatics effort= | |||
[http://ome-sorger7.mit.edu/~jmuhlich/mwtest/ Wiki-based model documentation] | |||
''with Brian Joughin, MIT/ICBP'' | |||
To be integrated into OWW | |||
< | Part of a larger workflow:<br> | ||
[[Image:OverallWorkflow.png]] | |||
[[Image: | |||
</div> | </div> | ||
<div class="slide"> | <div class="slide"> | ||
= | ="Living" Models= | ||
</div> | </div> | ||
Latest revision as of 07:09, 14 June 2007
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