OpenWetWare:Scientific Pipeline: Difference between revisions

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{| border="0" cellspacing="0" cellpadding="5" style="font-family:trebuchet ms;"
<html>
| &nbsp;
<style>
|  bgcolor="#F5F5F5" align="center" | '''Pre-publication'''
table.colortable tr {
|  bgcolor="#EEEEEE" align="center" | '''&rarr;'''
  text-align:center;
|  bgcolor="#F5F5F5" align="center" | '''Preprint'''
  font-family:trebuchet ms;
|  bgcolor="#EEEEEE" align="center" | '''&rarr;'''
}
|  bgcolor="#F5F5F5" align="center" | '''Publication'''
table.colortable tr.odd td { background-color:#ECECFF }
|  bgcolor="#EEEEEE" align="center" | '''&rarr;'''
table.colortable tr.even td { background-color:#DFDFFF }
|  bgcolor="#F5F5F5" align="center" | '''Post-publication'''
table.colortable tr.even th, table.colortable tr.even td.arrow { background-color:#EEEEEE }
|-
table.colortable tr.odd th, table.colortable tr.odd td.arrow { background-color:#F5F5F5 }
|  bgcolor="#EEEEEE" align="center"| '''Discussions'''
table.colortable tr.odd td.other { background-color: #ECECFF }
|  bgcolor="#CCFF99" align="center"| Science 2.0/Brainstorming
table.colortable tr.even td.other { background-color: #DFDFFF }
|  bgcolor="#CCFF99" align="center"|
</style>
|  bgcolor="#CCFF99" align="center"|
</html>
|  bgcolor="#CCFF99" align="center"|
|  bgcolor="#CCFF99" align="center"| Science 2.0
|  bgcolor="#CCFF99" align="center"|
|  bgcolor="#CCFF99" align="center"|
|-  
|  bgcolor="#EEEEEE" align="center"| '''Lab notebooks'''
|  bgcolor="#DFFFBF" align="center"| IGEM:Imperial/2007
|  bgcolor="#DFFFBF" align="center"|
|  bgcolor="#DFFFBF" align="center"|
|  bgcolor="#DFFFBF" align="center"|
|  bgcolor="#DFFFBF" align="center"|
|  bgcolor="#DFFFBF" align="center"|
|  bgcolor="#DFFFBF" align="center"|
|-
|  bgcolor="#F5F5F5" align="center"| '''Protocols'''
|  bgcolor="#CCFF99" align="center"| DNA ligation
|  bgcolor="#DFDFFF" align="center"|
|  bgcolor="#DFDFFF" align="center"|
|  bgcolor="#DFDFFF" align="center"|
|  bgcolor="#DFDFFF" align="center"| ''Molecular Cloning'',<br> ''Nature Methods''
|  bgcolor="#DFDFFF" align="center"|
|  bgcolor="#CCFF99" align="center"| Protocols,<br> ''Nature Protocols''
|-  
|  bgcolor="#F5F5F5" align="center"| '''Databases'''
|  bgcolor="#DFFFBF" align="center"| BioNumbers
|  bgcolor="#ECECFF" align="center"|
|  bgcolor="#ECECFF" align="center"|
|  bgcolor="#ECECFF" align="center"|
|  bgcolor="#ECECFF" align="center"| ''NCBI'',<br> ''RCSB Protein Data Bank''
|  bgcolor="#ECECFF" align="center"|
|  bgcolor="#DFFFBF" align="center"|
|-  
|  bgcolor="#EEEEEE" align="center"| '''Articles'''
|  bgcolor="#CCFF99" align="center"| Reviews:<br>Directed evolution/<br>Library construction
|  bgcolor="#DFDFFF" align="center"|
|  bgcolor="#DFDFFF" align="center"| ''arXiv'', ''DSpace'',<br> ''Nature Precedings''
|  bgcolor="#DFDFFF" align="center"|
|  bgcolor="#DFDFFF" align="center"| ''PLoS Biology'',<br> ''Nucleic Acids Research'',<br> ''PLoS ONE''
|  bgcolor="#DFDFFF" align="center"|
|  bgcolor="#CCFF99" align="center"| reviews.openwetware.org,<br> ''Postgenomic'',<br> ''PLoS ONE'' commentary
|-
|  bgcolor="#EEEEEE" align="center"| '''Courses'''
|  bgcolor="#DFFFBF" align="center"| 20.109
|  bgcolor="#ECECFF" align="center"|
|  bgcolor="#ECECFF" align="center"|
|  bgcolor="#ECECFF" align="center"|
|  bgcolor="#ECECFF" align="center"| ''MIT OpenCourseWare''
|  bgcolor="#ECECFF" align="center"|
|  bgcolor="#DFFFBF" align="center"|
|}


 
{| class="colortable" border="0" cellspacing="0" cellpadding="5"
{| border="0" cellspacing="0" cellpadding="5" style="font-family:trebuchet ms;"
|- class="odd"
| OWW:
| style="background-color:#FFFFFF" | &nbsp;
| bgcolor="#CCFF99" | &nbsp;&nbsp;&nbsp;
! Pre-publication
| bgcolor="#DFFFBF" | &nbsp;&nbsp;&nbsp;
| class="arrow" | &rarr;
|-  
! Preprint
| Other:
| class="arrow" | &rarr;
| bgcolor="#DFDFFF" | &nbsp;&nbsp;&nbsp;
! Publication
| bgcolor="#ECECFF" | &nbsp;&nbsp;&nbsp;
| class="arrow" | &rarr;
! Post-publication
|- class="even"
! Discussions
| [[Science 2.0/Brainstorming]]
| class="arrow" | &rarr;
|
| class="arrow" | &rarr;
| [[Science 2.0]]
| class="arrow" | &rarr;
|
|- class="odd"
! Lab notebooks
| [[IGEM:IMPERIAL/2006]]
| class="arrow" | &rarr;
|
| class="arrow" | &rarr;
| [http://dx.doi.org/10.1049/iet-stb:20070018 "Engineering a molecular predation oscillator" in ''IET Synthetic Biology'']
| class="arrow" | &rarr;
|
|- class="even"
! Labs & people
| [[Kafatos:Research]]<br>[[Kafatos:Fotis C. Kafatos|Fotis C. Kafatos]]
| class="arrow" | &rarr;
|
| class="arrow" | &rarr;
| [http://kafatos.openwetware.org kafatos.openwetware.org]
| class="arrow" | &rarr;
|
|- class="odd"
! Protocols
| [[DNA ligation]]
| class="arrow" | &rarr;
| ''[http://dspace.mit.edu/ DSpace]''
| class="arrow" | &rarr;
| class="other" | [http://dx.doi.org/10.1101/pdb.prot3919 "Directional Cloning into Plasmid Vectors"]<br> in [http://www.cshprotocols.org ''Molecular Cloning''] (subscription only)
| class="arrow" | &rarr;
| class="other" | [[Talk:DNA ligation]],<br> [http://www.protocol-online.org/forums/index.php ''Protocol Online Bioforum'']
|- class="even"
! Databases
| [[BioNumbers]],<br> [http://yeastpheromonemodel.org/wiki/MAPK/target_interaction_properties ''Yeast Pheromone Model wiki'']
| class="arrow" | &rarr;
| [http://dspace.mit.edu/ ''DSpace'']
| class="arrow" | &rarr;
| class="other" | [http://www.ncbi.nlm.nih.gov ''NCBI''],<br> [http://www.rcsb.org/pdb ''RCSB Protein Data Bank'']
| class="arrow" | &rarr;
| [[E. coli genotypes]],<br> [http://www.wikiproteins.org ''WikiProteins'']
|- class="odd"
! Courses
| [[BE.109|20.109: Laboratory Fundamentals of Biological Engineering]]
| class="arrow" | &rarr;
|
| class="arrow" | &rarr;
| class="other" | [http://ocw.mit.edu/OcwWeb/Biological-Engineering/20-109Spring-2006/CourseHome/index.htm "20.109" on ''MIT OpenCourseWare'']
| class="arrow" | &rarr;
|
|- class="even"
! Articles
| [[OpenWetWare:PLoS community page]]
| class="arrow" | &rarr;
| class="other" | (insert dspace/nature link to PLoS preprint),<br> [http://arxiv.org/ ''arXiv''],<br> [http://dspace.mit.edu/ ''DSpace'']<br> [http://precedings.nature.com/ ''Nature Precedings'']
| class="arrow" | &rarr;
| class="other" | (insert link to PLoS Biology article) in [http://biology.plosjournals.org ''PLoS Biology''],<br> [http://www.plosone.org ''PLoS ONE'']<br>
| class="arrow" | &rarr;
| class="other" | [[OpenWetWare_talk:PLoS community page]],<br> [http://reviews.openwetware.org reviews.openwetware.org],<br> [http://www.postgenomic.com/ ''Postgenomic''],<br> [http://www.plosone.org ''PLoS ONE''] commentary
|}
|}

Latest revision as of 13:30, 26 September 2007

<html> <style> table.colortable tr {

 text-align:center;
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} table.colortable tr.odd td { background-color:#ECECFF } table.colortable tr.even td { background-color:#DFDFFF } table.colortable tr.even th, table.colortable tr.even td.arrow { background-color:#EEEEEE } table.colortable tr.odd th, table.colortable tr.odd td.arrow { background-color:#F5F5F5 } table.colortable tr.odd td.other { background-color: #ECECFF } table.colortable tr.even td.other { background-color: #DFDFFF } </style> </html>

  Pre-publication Preprint Publication Post-publication
Discussions Science 2.0/Brainstorming Science 2.0
Lab notebooks IGEM:IMPERIAL/2006 "Engineering a molecular predation oscillator" in IET Synthetic Biology
Labs & people Kafatos:Research
Fotis C. Kafatos
kafatos.openwetware.org
Protocols DNA ligation DSpace "Directional Cloning into Plasmid Vectors"
in Molecular Cloning (subscription only)
Talk:DNA ligation,
Protocol Online Bioforum
Databases BioNumbers,
Yeast Pheromone Model wiki
DSpace NCBI,
RCSB Protein Data Bank
E. coli genotypes,
WikiProteins
Courses 20.109: Laboratory Fundamentals of Biological Engineering "20.109" on MIT OpenCourseWare
Articles OpenWetWare:PLoS community page (insert dspace/nature link to PLoS preprint),
arXiv,
DSpace
Nature Precedings
(insert link to PLoS Biology article) in PLoS Biology,
PLoS ONE
OpenWetWare_talk:PLoS community page,
reviews.openwetware.org,
Postgenomic,
PLoS ONE commentary