Pan:Publications

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2004-2006:
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*Dittmar, K.A., J.M. Goodenbour & Tao Pan: Tissue specific differences in human transfer RNA expression. PLoS Genetics 2, 2107-2115 (e221, 2006).
 +
*Saikia, M., Q. Dai, W.A. Decatur, M.J. Fournier, J.A. Piccirilli & Tao Pan: A systematic, ligation based approach to study RNA modifications, RNA 12, 2025-2033 (2006).
*Saikia, M., Q. Dai, W.A. Decatur, M.J. Fournier, J.A. Piccirilli & Tao Pan: A systematic, ligation based approach to study RNA modifications, RNA 12, 2025-2033 (2006).
*Goodenbour, J.M. & Tao Pan: Diversity of tRNA genes in eukaryotes. Nucl. Acids Res. 34, 6137-46 (2006).
*Goodenbour, J.M. & Tao Pan: Diversity of tRNA genes in eukaryotes. Nucl. Acids Res. 34, 6137-46 (2006).
-
*Baird NJ, Westhof E, Qin H, Pan T, Sosnick TR.  Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding. J Mol Biol. 2005 Sep 23;352(3):712-22. PMID: 16115647 
+
*Baird, N.J., N. Srividya, A. Krasilnikov, A. Mondragón, T. R. Sosnick & Tao Pan: Structural basis for altering the stability of homologous RNAs from a mesophilic and a thermophilic bacterium, RNA 12, 598-606 (2006).
 +
 
 +
*Tao Pan & T.R. Sosnick: RNA folding during transcription. Ann. Rev. Biophysics and Biomol. Dynamics 35, 161-175 (2006).
 +
 
 +
*Baird NJ, Westhof E, Qin H, Pan T, Sosnick TR.  Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding. J Mol Biol. 352:712-22 (2005).  
*Torres-Larios A, Swinger KK, Krasilnikov AS, Pan T, Mondragon A.  
*Torres-Larios A, Swinger KK, Krasilnikov AS, Pan T, Mondragon A.  
Crystal structure of the RNA component of bacterial ribonuclease P.
Crystal structure of the RNA component of bacterial ribonuclease P.
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Nature. 2005 Sep 22;437(7058):584-7. Epub 2005 Aug 21.  
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Nature 437:584-7 (2005).
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PMID: 16113684 
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*Le TT, Harlepp S, Guet CC, Dittmar K, Emonet T, Pan T, Cluzel P.  
*Le TT, Harlepp S, Guet CC, Dittmar K, Emonet T, Pan T, Cluzel P.  
Real-time RNA profiling within a single bacterium.
Real-time RNA profiling within a single bacterium.
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Proc Natl Acad Sci U S A. 2005 Jun 28;102(26):9160-4. Epub 2005 Jun 20.  
+
Proc Natl Acad Sci USA 102:9160-4 (2005).  
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PMID: 15967986 
+
*Wong T, Sosnick TR, Pan T.  
*Wong T, Sosnick TR, Pan T.  
Mechanistic insights on the folding of a large ribozyme during transcription.
Mechanistic insights on the folding of a large ribozyme during transcription.
-
Biochemistry. 2005 May 24;44(20):7535-42.  
+
Biochemistry 44:7535-42 (2005).  
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PMID: 15895996  
+
   
-
 
+
*Dittmar KA, Sorensen MA, Elf J, Ehrenberg M, Pan T.  
*Dittmar KA, Sorensen MA, Elf J, Ehrenberg M, Pan T.  
Selective charging of tRNA isoacceptors induced by amino-acid starvation.
Selective charging of tRNA isoacceptors induced by amino-acid starvation.
-
EMBO Rep. 2005 Feb;6(2):151-7.  
+
EMBO Rep. 6:151-7 (2005).  
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PMID: 15678157 
+
*Smith GJ, Sosnick TR, Scherer NF, Pan T.  
*Smith GJ, Sosnick TR, Scherer NF, Pan T.  
Efficient fluorescence labeling of a large RNA through oligonucleotide
Efficient fluorescence labeling of a large RNA through oligonucleotide
-
hybridization.
+
hybridization. RNA 11:234-9 (2005).  
-
RNA. 2005 Feb;11(2):234-9. Epub 2004 Dec 21.
+
-
PMID: 15613536 
+
*Krasilnikov AS, Xiao Y, Pan T, Mondragon A.  
*Krasilnikov AS, Xiao Y, Pan T, Mondragon A.  
Basis for structural diversity in homologous RNAs.
Basis for structural diversity in homologous RNAs.
-
Science. 2004 Oct 1;306(5693):104-7.  
+
Science 306:104-7 (2004).  
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PMID: 15459389 
+
*Dittmar KA, Mobley EM, Radek AJ, Pan T.  
*Dittmar KA, Mobley EM, Radek AJ, Pan T.  
Exploring the regulation of tRNA distribution on the genomic scale.
Exploring the regulation of tRNA distribution on the genomic scale.
-
J Mol Biol. 2004 Mar 12;337(1):31-47.  
+
J Mol Biol. 337:31-47 (2004).   
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PMID: 15001350  
+
*Barrera A, Pan T.  
*Barrera A, Pan T.  
Interaction of the Bacillus subtilis RNase P with the 30S ribosomal subunit.
Interaction of the Bacillus subtilis RNase P with the 30S ribosomal subunit.
-
RNA. 2004 Mar;10(3):482-92.  
+
RNA 10:482-92 (2004).  
-
PMID: 14970393 
+
*Xie Z, Srividya N, Sosnick TR, Pan T, Scherer NF.  
*Xie Z, Srividya N, Sosnick TR, Pan T, Scherer NF.  
Single-molecule studies highlight conformational heterogeneity in the early
Single-molecule studies highlight conformational heterogeneity in the early
-
folding steps of a large ribozyme.
+
folding steps of a large ribozyme. Proc Natl Acad Sci USA 101:534-9 (2004).  
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Proc Natl Acad Sci U S A. 2004 Jan 13;101(2):534-9. Epub 2004 Jan 2.  
+
-
PMID: 14704266 
+
 +
Selected older publications:
*Sosnick TR, Pan T.  
*Sosnick TR, Pan T.  
RNA folding: models and perspectives.
RNA folding: models and perspectives.
-
Curr Opin Struct Biol. 2003 Jun;13(3):309-16. Review.  
+
Curr Opin Struct Biol. 13:309-16 (2003). Review.  
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PMID: 12831881  
+
   
-
 
+
*Krasilnikov AS, Yang X, Pan T, Mondragon A.  
*Krasilnikov AS, Yang X, Pan T, Mondragon A.  
Crystal structure of the specificity domain of ribonuclease P.
Crystal structure of the specificity domain of ribonuclease P.
-
Nature. 2003 Feb 13;421(6924):760-4.  
+
Nature 421:760-4 (2003).  
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PMID: 12610630 
+
 
 +
 
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*Sosnick TR, Pan T.
 
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Getting hotter with RNA.
 
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Nat Struct Biol. 2002 Nov;9(11):795-6. No abstract available.
 
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PMID: 12402034
 
<font color=#000000 size=2> [[Pan Lab |Main]] | [[Pan:What we do|What we do]] | [[Pan:Who we are|Who we are]] | [[Pan:Publications|Publications]] | [[Pan:Protocols|Protocols]] | [[Pan:Links|Links]] | [[Pan:Contact us|Contact us]]
<font color=#000000 size=2> [[Pan Lab |Main]] | [[Pan:What we do|What we do]] | [[Pan:Who we are|Who we are]] | [[Pan:Publications|Publications]] | [[Pan:Protocols|Protocols]] | [[Pan:Links|Links]] | [[Pan:Contact us|Contact us]]

Revision as of 17:42, 7 February 2007

2004-2006:

  • Dittmar, K.A., J.M. Goodenbour & Tao Pan: Tissue specific differences in human transfer RNA expression. PLoS Genetics 2, 2107-2115 (e221, 2006).
  • Saikia, M., Q. Dai, W.A. Decatur, M.J. Fournier, J.A. Piccirilli & Tao Pan: A systematic, ligation based approach to study RNA modifications, RNA 12, 2025-2033 (2006).
  • Goodenbour, J.M. & Tao Pan: Diversity of tRNA genes in eukaryotes. Nucl. Acids Res. 34, 6137-46 (2006).
  • Baird, N.J., N. Srividya, A. Krasilnikov, A. Mondragón, T. R. Sosnick & Tao Pan: Structural basis for altering the stability of homologous RNAs from a mesophilic and a thermophilic bacterium, RNA 12, 598-606 (2006).
  • Tao Pan & T.R. Sosnick: RNA folding during transcription. Ann. Rev. Biophysics and Biomol. Dynamics 35, 161-175 (2006).
  • Baird NJ, Westhof E, Qin H, Pan T, Sosnick TR. Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding. J Mol Biol. 352:712-22 (2005).
  • Torres-Larios A, Swinger KK, Krasilnikov AS, Pan T, Mondragon A.

Crystal structure of the RNA component of bacterial ribonuclease P. Nature 437:584-7 (2005).

  • Le TT, Harlepp S, Guet CC, Dittmar K, Emonet T, Pan T, Cluzel P.

Real-time RNA profiling within a single bacterium. Proc Natl Acad Sci USA 102:9160-4 (2005).

  • Wong T, Sosnick TR, Pan T.

Mechanistic insights on the folding of a large ribozyme during transcription. Biochemistry 44:7535-42 (2005).

  • Dittmar KA, Sorensen MA, Elf J, Ehrenberg M, Pan T.

Selective charging of tRNA isoacceptors induced by amino-acid starvation. EMBO Rep. 6:151-7 (2005).

  • Smith GJ, Sosnick TR, Scherer NF, Pan T.

Efficient fluorescence labeling of a large RNA through oligonucleotide hybridization. RNA 11:234-9 (2005).

  • Krasilnikov AS, Xiao Y, Pan T, Mondragon A.

Basis for structural diversity in homologous RNAs. Science 306:104-7 (2004).

  • Dittmar KA, Mobley EM, Radek AJ, Pan T.

Exploring the regulation of tRNA distribution on the genomic scale. J Mol Biol. 337:31-47 (2004).

  • Barrera A, Pan T.

Interaction of the Bacillus subtilis RNase P with the 30S ribosomal subunit. RNA 10:482-92 (2004).

  • Xie Z, Srividya N, Sosnick TR, Pan T, Scherer NF.

Single-molecule studies highlight conformational heterogeneity in the early folding steps of a large ribozyme. Proc Natl Acad Sci USA 101:534-9 (2004).

Selected older publications:

  • Sosnick TR, Pan T.

RNA folding: models and perspectives. Curr Opin Struct Biol. 13:309-16 (2003). Review.

  • Krasilnikov AS, Yang X, Pan T, Mondragon A.

Crystal structure of the specificity domain of ribonuclease P. Nature 421:760-4 (2003).



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