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2004-2006:
*Dittmar, K.A., J.M. Goodenbour & Tao Pan: Tissue specific differences in human transfer RNA expression. PLoS Genetics 2, 2107-2115 (e221, 2006).
*Saikia, M., Q. Dai, W.A. Decatur, M.J. Fournier, J.A. Piccirilli & Tao Pan: A systematic, ligation based approach to study RNA modifications, RNA 12, 2025-2033 (2006).
*Saikia, M., Q. Dai, W.A. Decatur, M.J. Fournier, J.A. Piccirilli & Tao Pan: A systematic, ligation based approach to study RNA modifications, RNA 12, 2025-2033 (2006).


*Goodenbour, J.M. & Tao Pan: Diversity of tRNA genes in eukaryotes. Nucl. Acids Res. 34, 6137-46 (2006).
*Goodenbour, J.M. & Tao Pan: Diversity of tRNA genes in eukaryotes. Nucl. Acids Res. 34, 6137-46 (2006).


*Baird NJ, Westhof E, Qin H, Pan T, Sosnick TR.  Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding. J Mol Biol. 2005 Sep 23;352(3):712-22. PMID: 16115647 
*Baird, N.J., N. Srividya, A. Krasilnikov, A. Mondragón, T. R. Sosnick & Tao Pan: Structural basis for altering the stability of homologous RNAs from a mesophilic and a thermophilic bacterium, RNA 12, 598-606 (2006).
 
*Tao Pan & T.R. Sosnick: RNA folding during transcription. Ann. Rev. Biophysics and Biomol. Dynamics 35, 161-175 (2006).
 
*Baird NJ, Westhof E, Qin H, Pan T, Sosnick TR.  Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding. J Mol Biol. 352:712-22 (2005).  


*Torres-Larios A, Swinger KK, Krasilnikov AS, Pan T, Mondragon A.  
*Torres-Larios A, Swinger KK, Krasilnikov AS, Pan T, Mondragon A.  
Crystal structure of the RNA component of bacterial ribonuclease P.
Crystal structure of the RNA component of bacterial ribonuclease P.
Nature. 2005 Sep 22;437(7058):584-7. Epub 2005 Aug 21.  
Nature 437:584-7 (2005).
PMID: 16113684 


*Le TT, Harlepp S, Guet CC, Dittmar K, Emonet T, Pan T, Cluzel P.  
*Le TT, Harlepp S, Guet CC, Dittmar K, Emonet T, Pan T, Cluzel P.  
Real-time RNA profiling within a single bacterium.
Real-time RNA profiling within a single bacterium.
Proc Natl Acad Sci U S A. 2005 Jun 28;102(26):9160-4. Epub 2005 Jun 20.  
Proc Natl Acad Sci USA 102:9160-4 (2005).  
PMID: 15967986 


*Wong T, Sosnick TR, Pan T.  
*Wong T, Sosnick TR, Pan T.  
Mechanistic insights on the folding of a large ribozyme during transcription.
Mechanistic insights on the folding of a large ribozyme during transcription.
Biochemistry. 2005 May 24;44(20):7535-42.  
Biochemistry 44:7535-42 (2005).  
PMID: 15895996  
   
 
*Dittmar KA, Sorensen MA, Elf J, Ehrenberg M, Pan T.  
*Dittmar KA, Sorensen MA, Elf J, Ehrenberg M, Pan T.  
Selective charging of tRNA isoacceptors induced by amino-acid starvation.
Selective charging of tRNA isoacceptors induced by amino-acid starvation.
EMBO Rep. 2005 Feb;6(2):151-7.  
EMBO Rep. 6:151-7 (2005).  
PMID: 15678157 


*Smith GJ, Sosnick TR, Scherer NF, Pan T.  
*Smith GJ, Sosnick TR, Scherer NF, Pan T.  
Efficient fluorescence labeling of a large RNA through oligonucleotide
Efficient fluorescence labeling of a large RNA through oligonucleotide
hybridization.
hybridization. RNA 11:234-9 (2005).  
RNA. 2005 Feb;11(2):234-9. Epub 2004 Dec 21.
PMID: 15613536 


*Krasilnikov AS, Xiao Y, Pan T, Mondragon A.  
*Krasilnikov AS, Xiao Y, Pan T, Mondragon A.  
Basis for structural diversity in homologous RNAs.
Basis for structural diversity in homologous RNAs.
Science. 2004 Oct 1;306(5693):104-7.  
Science 306:104-7 (2004).  
PMID: 15459389 


*Dittmar KA, Mobley EM, Radek AJ, Pan T.  
*Dittmar KA, Mobley EM, Radek AJ, Pan T.  
Exploring the regulation of tRNA distribution on the genomic scale.
Exploring the regulation of tRNA distribution on the genomic scale.
J Mol Biol. 2004 Mar 12;337(1):31-47.  
J Mol Biol. 337:31-47 (2004).   
PMID: 15001350  


*Barrera A, Pan T.  
*Barrera A, Pan T.  
Interaction of the Bacillus subtilis RNase P with the 30S ribosomal subunit.
Interaction of the Bacillus subtilis RNase P with the 30S ribosomal subunit.
RNA. 2004 Mar;10(3):482-92.  
RNA 10:482-92 (2004).  
PMID: 14970393 


*Xie Z, Srividya N, Sosnick TR, Pan T, Scherer NF.  
*Xie Z, Srividya N, Sosnick TR, Pan T, Scherer NF.  
Single-molecule studies highlight conformational heterogeneity in the early
Single-molecule studies highlight conformational heterogeneity in the early
folding steps of a large ribozyme.
folding steps of a large ribozyme. Proc Natl Acad Sci USA 101:534-9 (2004).  
Proc Natl Acad Sci U S A. 2004 Jan 13;101(2):534-9. Epub 2004 Jan 2.  
PMID: 14704266 


Selected older publications:
*Sosnick TR, Pan T.  
*Sosnick TR, Pan T.  
RNA folding: models and perspectives.
RNA folding: models and perspectives.
Curr Opin Struct Biol. 2003 Jun;13(3):309-16. Review.  
Curr Opin Struct Biol. 13:309-16 (2003). Review.  
PMID: 12831881  
   
 
*Krasilnikov AS, Yang X, Pan T, Mondragon A.  
*Krasilnikov AS, Yang X, Pan T, Mondragon A.  
Crystal structure of the specificity domain of ribonuclease P.
Crystal structure of the specificity domain of ribonuclease P.
Nature. 2003 Feb 13;421(6924):760-4.  
Nature 421:760-4 (2003).  
PMID: 12610630 
 
 


*Sosnick TR, Pan T.
Getting hotter with RNA.
Nat Struct Biol. 2002 Nov;9(11):795-6. No abstract available.
PMID: 12402034




<font color=#000000 size=2> [[Pan Lab |Main]] | [[Pan:What we do|What we do]] | [[Pan:Who we are|Who we are]] | [[Pan:Publications|Publications]] | [[Pan:Protocols|Protocols]] | [[Pan:Links|Links]] | [[Pan:Contact us|Contact us]]
<font color=#000000 size=2> [[Pan Lab |Main]] | [[Pan:What we do|What we do]] | [[Pan:Who we are|Who we are]] | [[Pan:Publications|Publications]] | [[Pan:Protocols|Protocols]] | [[Pan:Links|Links]] | [[Pan:Contact us|Contact us]]

Revision as of 15:42, 7 February 2007

2004-2006:

  • Dittmar, K.A., J.M. Goodenbour & Tao Pan: Tissue specific differences in human transfer RNA expression. PLoS Genetics 2, 2107-2115 (e221, 2006).
  • Saikia, M., Q. Dai, W.A. Decatur, M.J. Fournier, J.A. Piccirilli & Tao Pan: A systematic, ligation based approach to study RNA modifications, RNA 12, 2025-2033 (2006).
  • Goodenbour, J.M. & Tao Pan: Diversity of tRNA genes in eukaryotes. Nucl. Acids Res. 34, 6137-46 (2006).
  • Baird, N.J., N. Srividya, A. Krasilnikov, A. Mondragón, T. R. Sosnick & Tao Pan: Structural basis for altering the stability of homologous RNAs from a mesophilic and a thermophilic bacterium, RNA 12, 598-606 (2006).
  • Tao Pan & T.R. Sosnick: RNA folding during transcription. Ann. Rev. Biophysics and Biomol. Dynamics 35, 161-175 (2006).
  • Baird NJ, Westhof E, Qin H, Pan T, Sosnick TR. Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding. J Mol Biol. 352:712-22 (2005).
  • Torres-Larios A, Swinger KK, Krasilnikov AS, Pan T, Mondragon A.

Crystal structure of the RNA component of bacterial ribonuclease P. Nature 437:584-7 (2005).

  • Le TT, Harlepp S, Guet CC, Dittmar K, Emonet T, Pan T, Cluzel P.

Real-time RNA profiling within a single bacterium. Proc Natl Acad Sci USA 102:9160-4 (2005).

  • Wong T, Sosnick TR, Pan T.

Mechanistic insights on the folding of a large ribozyme during transcription. Biochemistry 44:7535-42 (2005).

  • Dittmar KA, Sorensen MA, Elf J, Ehrenberg M, Pan T.

Selective charging of tRNA isoacceptors induced by amino-acid starvation. EMBO Rep. 6:151-7 (2005).

  • Smith GJ, Sosnick TR, Scherer NF, Pan T.

Efficient fluorescence labeling of a large RNA through oligonucleotide hybridization. RNA 11:234-9 (2005).

  • Krasilnikov AS, Xiao Y, Pan T, Mondragon A.

Basis for structural diversity in homologous RNAs. Science 306:104-7 (2004).

  • Dittmar KA, Mobley EM, Radek AJ, Pan T.

Exploring the regulation of tRNA distribution on the genomic scale. J Mol Biol. 337:31-47 (2004).

  • Barrera A, Pan T.

Interaction of the Bacillus subtilis RNase P with the 30S ribosomal subunit. RNA 10:482-92 (2004).

  • Xie Z, Srividya N, Sosnick TR, Pan T, Scherer NF.

Single-molecule studies highlight conformational heterogeneity in the early folding steps of a large ribozyme. Proc Natl Acad Sci USA 101:534-9 (2004).

Selected older publications:

  • Sosnick TR, Pan T.

RNA folding: models and perspectives. Curr Opin Struct Biol. 13:309-16 (2003). Review.

  • Krasilnikov AS, Yang X, Pan T, Mondragon A.

Crystal structure of the specificity domain of ribonuclease P. Nature 421:760-4 (2003).



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