Pan:Publications

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*Baird, N.J., N. Srividya, A. Krasilnikov, A. Mondragón, T. R. Sosnick & Tao Pan: Structural basis for altering the stability of homologous RNAs from a mesophilic and a thermophilic bacterium, RNA 12, 598-606 (2006).
*Baird, N.J., N. Srividya, A. Krasilnikov, A. Mondragón, T. R. Sosnick & Tao Pan: Structural basis for altering the stability of homologous RNAs from a mesophilic and a thermophilic bacterium, RNA 12, 598-606 (2006).
-
*Tao Pan & T.R. Sosnick: RNA folding during transcription. Ann. Rev. Biophysics and Biomol. Dynamics 35, 161-175 (2006).
+
*Tao Pan & T.R. Sosnick: RNA folding during transcription. Ann. Rev. Biophysics and Biomol. Dynamics 35, 161-175 (2006). Review.
*Baird NJ, Westhof E, Qin H, Pan T, Sosnick TR.  Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding. J Mol Biol. 352:712-22 (2005).  
*Baird NJ, Westhof E, Qin H, Pan T, Sosnick TR.  Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding. J Mol Biol. 352:712-22 (2005).  
-
*Torres-Larios A, Swinger KK, Krasilnikov AS, Pan T, Mondragon A.  
+
*Torres-Larios A, Swinger KK, Krasilnikov AS, Pan T, Mondragon A. Crystal structure of the RNA component of bacterial ribonuclease P. Nature 437:584-7 (2005).
-
Crystal structure of the RNA component of bacterial ribonuclease P.
+
-
Nature 437:584-7 (2005).
+
-
*Le TT, Harlepp S, Guet CC, Dittmar K, Emonet T, Pan T, Cluzel P.  
+
*Le TT, Harlepp S, Guet CC, Dittmar K, Emonet T, Pan T, Cluzel P. Real-time RNA profiling within a single bacterium. Proc Natl Acad Sci USA 102:9160-4 (2005).  
-
Real-time RNA profiling within a single bacterium.
+
-
Proc Natl Acad Sci USA 102:9160-4 (2005).  
+
-
*Wong T, Sosnick TR, Pan T.  
+
*Wong T, Sosnick TR, Pan T. Mechanistic insights on the folding of a large ribozyme during transcription. Biochemistry 44:7535-42 (2005).  
-
Mechanistic insights on the folding of a large ribozyme during transcription.
+
-
Biochemistry 44:7535-42 (2005).  
+
   
   
-
*Dittmar KA, Sorensen MA, Elf J, Ehrenberg M, Pan T.  
+
*Dittmar KA, Sorensen MA, Elf J, Ehrenberg M, Pan T. Selective charging of tRNA isoacceptors induced by amino-acid starvation. EMBO Rep. 6:151-7 (2005).  
-
Selective charging of tRNA isoacceptors induced by amino-acid starvation.
+
-
EMBO Rep. 6:151-7 (2005).  
+
-
*Smith GJ, Sosnick TR, Scherer NF, Pan T.  
+
*Smith GJ, Sosnick TR, Scherer NF, Pan T. Efficient fluorescence labeling of a large RNA through oligonucleotide hybridization. RNA 11:234-9 (2005).  
-
Efficient fluorescence labeling of a large RNA through oligonucleotide
+
-
hybridization. RNA 11:234-9 (2005).  
+
-
*Krasilnikov AS, Xiao Y, Pan T, Mondragon A.  
+
*Krasilnikov AS, Xiao Y, Pan T, Mondragon A. Basis for structural diversity in homologous RNAs. Science 306:104-7 (2004).  
-
Basis for structural diversity in homologous RNAs.
+
-
Science 306:104-7 (2004).  
+
-
*Dittmar KA, Mobley EM, Radek AJ, Pan T.  
+
*Dittmar KA, Mobley EM, Radek AJ, Pan T. Exploring the regulation of tRNA distribution on the genomic scale. J Mol Biol. 337:31-47 (2004).   
-
Exploring the regulation of tRNA distribution on the genomic scale.
+
-
J Mol Biol. 337:31-47 (2004).   
+
-
*Barrera A, Pan T.  
+
*Barrera A, Pan T. Interaction of the Bacillus subtilis RNase P with the 30S ribosomal subunit. RNA 10:482-92 (2004).  
-
Interaction of the Bacillus subtilis RNase P with the 30S ribosomal subunit.
+
-
RNA 10:482-92 (2004).  
+
*Xie Z, Srividya N, Sosnick TR, Pan T, Scherer NF.  
*Xie Z, Srividya N, Sosnick TR, Pan T, Scherer NF.  
Line 50: Line 34:
Selected older publications:
Selected older publications:
-
*Sosnick TR, Pan T.  
+
*Sosnick TR, Pan T. RNA folding: models and perspectives.
-
RNA folding: models and perspectives.
+
Curr Opin Struct Biol. 13:309-16 (2003). Review.  
Curr Opin Struct Biol. 13:309-16 (2003). Review.  
   
   
-
*Krasilnikov AS, Yang X, Pan T, Mondragon A.  
+
*Krasilnikov AS, Yang X, Pan T, Mondragon A. Crystal structure of the specificity domain of ribonuclease P. Nature 421:760-4 (2003).  
-
Crystal structure of the specificity domain of ribonuclease P.
+
-
Nature 421:760-4 (2003).  
+
    
    
 +
*Fang, X-W., P. Thiyagarajan, T.R. Sosnick & Tao Pan: The rate-limiting step in the folding of a large ribozyme without kinetic traps. Proc. Natl. Acad. Sci. USA 99, 8518-8523 (2002).
 +
*Fang, X-W., B.L. Golden, K. Littrell, V. Shelton, P. Thiyagarajan, Tao Pan & T.R. Sosnick: The thermodynamic origin of the stability of a thermophilic ribozyme. Proc. Natl. Acad. Sci. USA 98, 4355-4360 (2001).
 +
*Tao Pan, I. Artsimovitch, X-W. Fang, R. Landick & T.R. Sosnick: Folding of a large ribozyme during transcription and the effect of the elongation factor NusA. Proc. Natl. Acad. Sci. USA 96, 9545-9550 (1999).
<font color=#000000 size=2> [[Pan Lab |Main]] | [[Pan:What we do|What we do]] | [[Pan:Who we are|Who we are]] | [[Pan:Publications|Publications]] | [[Pan:Protocols|Protocols]] | [[Pan:Links|Links]] | [[Pan:Contact us|Contact us]]
<font color=#000000 size=2> [[Pan Lab |Main]] | [[Pan:What we do|What we do]] | [[Pan:Who we are|Who we are]] | [[Pan:Publications|Publications]] | [[Pan:Protocols|Protocols]] | [[Pan:Links|Links]] | [[Pan:Contact us|Contact us]]

Revision as of 18:57, 9 February 2007

2004-2006:

  • Dittmar, K.A., J.M. Goodenbour & Tao Pan: Tissue specific differences in human transfer RNA expression. PLoS Genetics 2, 2107-2115 (e221, 2006).
  • Saikia, M., Q. Dai, W.A. Decatur, M.J. Fournier, J.A. Piccirilli & Tao Pan: A systematic, ligation based approach to study RNA modifications, RNA 12, 2025-2033 (2006).
  • Goodenbour, J.M. & Tao Pan: Diversity of tRNA genes in eukaryotes. Nucl. Acids Res. 34, 6137-46 (2006).
  • Baird, N.J., N. Srividya, A. Krasilnikov, A. Mondragón, T. R. Sosnick & Tao Pan: Structural basis for altering the stability of homologous RNAs from a mesophilic and a thermophilic bacterium, RNA 12, 598-606 (2006).
  • Tao Pan & T.R. Sosnick: RNA folding during transcription. Ann. Rev. Biophysics and Biomol. Dynamics 35, 161-175 (2006). Review.
  • Baird NJ, Westhof E, Qin H, Pan T, Sosnick TR. Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding. J Mol Biol. 352:712-22 (2005).
  • Torres-Larios A, Swinger KK, Krasilnikov AS, Pan T, Mondragon A. Crystal structure of the RNA component of bacterial ribonuclease P. Nature 437:584-7 (2005).
  • Le TT, Harlepp S, Guet CC, Dittmar K, Emonet T, Pan T, Cluzel P. Real-time RNA profiling within a single bacterium. Proc Natl Acad Sci USA 102:9160-4 (2005).
  • Wong T, Sosnick TR, Pan T. Mechanistic insights on the folding of a large ribozyme during transcription. Biochemistry 44:7535-42 (2005).
  • Dittmar KA, Sorensen MA, Elf J, Ehrenberg M, Pan T. Selective charging of tRNA isoacceptors induced by amino-acid starvation. EMBO Rep. 6:151-7 (2005).
  • Smith GJ, Sosnick TR, Scherer NF, Pan T. Efficient fluorescence labeling of a large RNA through oligonucleotide hybridization. RNA 11:234-9 (2005).
  • Krasilnikov AS, Xiao Y, Pan T, Mondragon A. Basis for structural diversity in homologous RNAs. Science 306:104-7 (2004).
  • Dittmar KA, Mobley EM, Radek AJ, Pan T. Exploring the regulation of tRNA distribution on the genomic scale. J Mol Biol. 337:31-47 (2004).
  • Barrera A, Pan T. Interaction of the Bacillus subtilis RNase P with the 30S ribosomal subunit. RNA 10:482-92 (2004).
  • Xie Z, Srividya N, Sosnick TR, Pan T, Scherer NF.

Single-molecule studies highlight conformational heterogeneity in the early folding steps of a large ribozyme. Proc Natl Acad Sci USA 101:534-9 (2004).

Selected older publications:

  • Sosnick TR, Pan T. RNA folding: models and perspectives.

Curr Opin Struct Biol. 13:309-16 (2003). Review.

  • Krasilnikov AS, Yang X, Pan T, Mondragon A. Crystal structure of the specificity domain of ribonuclease P. Nature 421:760-4 (2003).
  • Fang, X-W., P. Thiyagarajan, T.R. Sosnick & Tao Pan: The rate-limiting step in the folding of a large ribozyme without kinetic traps. Proc. Natl. Acad. Sci. USA 99, 8518-8523 (2002).
  • Fang, X-W., B.L. Golden, K. Littrell, V. Shelton, P. Thiyagarajan, Tao Pan & T.R. Sosnick: The thermodynamic origin of the stability of a thermophilic ribozyme. Proc. Natl. Acad. Sci. USA 98, 4355-4360 (2001).
  • Tao Pan, I. Artsimovitch, X-W. Fang, R. Landick & T.R. Sosnick: Folding of a large ribozyme during transcription and the effect of the elongation factor NusA. Proc. Natl. Acad. Sci. USA 96, 9545-9550 (1999).


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