Pan:Publications

2005-2007:

• Dai, Q., R. Fong, M. Saikia, D. Stephenson, Y.-T. Yu, Tao Pan & J.A. Piccirill: Identification of Recognition Residues for Ligation-Based Detection and Quantitation of Pseudouridine and N6-Methyladeonsine, Nucl. Acids Res. 35, 6322-6329 (2007).

• Baird, N.J., X.-W. Fang, N. Srividya, Tao Pan & T. R. Sosnick: Folding of a universal ribozyme, the RNase P RNA. Q. Rev. Biophys. 40, 113-161 (2007). Review.

• Wong, T., T.R. Sosnick & Tao Pan: Folding of non-coding RNAs during transcription facilitated by pausing-induced non-native structures, Proc. Natl. Acad. Sci. USA 104, 17995-18000 (2007).

• Dittmar, K.A., J.M. Goodenbour & Tao Pan: Tissue specific differences in human transfer RNA expression. PLoS Genetics 2, 2107-2115 (e221, 2006).

• Saikia, M., Q. Dai, W.A. Decatur, M.J. Fournier, J.A. Piccirilli & Tao Pan: A systematic, ligation based approach to study RNA modifications, RNA 12, 2025-2033 (2006).

• Goodenbour, J.M. & Tao Pan: Diversity of tRNA genes in eukaryotes. Nucl. Acids Res. 34, 6137-46 (2006).

• Baird, N.J., N. Srividya, A. Krasilnikov, A. Mondragón, T. R. Sosnick & Tao Pan: Structural basis for altering the stability of homologous RNAs from a mesophilic and a thermophilic bacterium, RNA 12, 598-606 (2006).

• Tao Pan & T.R. Sosnick: RNA folding during transcription. Ann. Rev. Biophysics and Biomol. Dynamics 35, 161-175 (2006). Review.

• Baird NJ, Westhof E, Qin H, Pan T, Sosnick TR. Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding. J Mol Biol. 352:712-22 (2005).

• Torres-Larios A, Swinger KK, Krasilnikov AS, Pan T, Mondragon A. Crystal structure of the RNA component of bacterial ribonuclease P. Nature 437:584-7 (2005).

• Le TT, Harlepp S, Guet CC, Dittmar K, Emonet T, Pan T, Cluzel P. Real-time RNA profiling within a single bacterium. Proc Natl Acad Sci USA 102:9160-4 (2005).

• Wong T, Sosnick TR, Pan T. Mechanistic insights on the folding of a large ribozyme during transcription. Biochemistry 44:7535-42 (2005).

• Dittmar KA, Sorensen MA, Elf J, Ehrenberg M, Pan T. Selective charging of tRNA isoacceptors induced by amino-acid starvation. EMBO Rep. 6:151-7 (2005).

• Smith GJ, Sosnick TR, Scherer NF, Pan T. Efficient fluorescence labeling of a large RNA through oligonucleotide hybridization. RNA 11:234-9 (2005).

Selected older publications:

• Krasilnikov AS, Xiao Y, Pan T, Mondragon A. Basis for structural diversity in homologous RNAs. Science 306:104-7 (2004).

• Dittmar KA, Mobley EM, Radek AJ, Pan T. Exploring the regulation of tRNA distribution on the genomic scale. J Mol Biol. 337:31-47 (2004).

• Krasilnikov AS, Yang X, Pan T, Mondragon A. Crystal structure of the specificity domain of ribonuclease P. Nature 421:760-4 (2003).

• Fang, X-W., P. Thiyagarajan, T.R. Sosnick & Tao Pan: The rate-limiting step in the folding of a large ribozyme without kinetic traps. Proc. Natl. Acad. Sci. USA 99, 8518-8523 (2002).

• Fang, X-W., B.L. Golden, K. Littrell, V. Shelton, P. Thiyagarajan, Tao Pan & T.R. Sosnick: The thermodynamic origin of the stability of a thermophilic ribozyme. Proc. Natl. Acad. Sci. USA 98, 4355-4360 (2001).

• Tao Pan, I. Artsimovitch, X-W. Fang, R. Landick & T.R. Sosnick: Folding of a large ribozyme during transcription and the effect of the elongation factor NusA. Proc. Natl. Acad. Sci. USA 96, 9545-9550 (1999).

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