Paul Magnano: Week 12 Individual Journal

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(add #5 of week 12 assign)
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**2.0 E-49
**2.0 E-49
*How many GO terms are associated with this profile at p value <0.05?
*How many GO terms are associated with this profile at p value <0.05?
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**91
*How many GO terms are associated with this profile with a corrected  p value <0.05?
*How many GO terms are associated with this profile with a corrected  p value <0.05?
 +
**8
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 +
==10 Gene Ontology Terms==
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*protein folding: The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
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*cytosol:
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*chaperone binding
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*unfolded protein binding
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*ribosomal subunit
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*oxidoreductase activity
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*NAD binding
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*hexose metabolic process
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*carbohydrate biosynthetic process
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*monosaccharide metabolic process

Revision as of 18:16, 11 April 2013

Analyzing and Interpreting STEM Results

  • Profile #9 selected
  • Why did you select this profile? In other words, why was it interesting to you?
    • I selected this profile because it seemed interesting that the genes were immediately down-regulated at the early time points but later up-regulated as time increased. This seemed indicative of some necessary change being made and then corrected as the intended action resulted.
  • How many genes belong to this profile?
    • 170
  • How many genes were expected to belong to this profile?
    • 44
  • What is the p value for the enrichment of genes in this profile?
    • 2.0 E-49
  • How many GO terms are associated with this profile at p value <0.05?
    • 91
  • How many GO terms are associated with this profile with a corrected p value <0.05?
    • 8

10 Gene Ontology Terms

  • protein folding: The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
  • cytosol:
  • chaperone binding
  • unfolded protein binding
  • ribosomal subunit
  • oxidoreductase activity
  • NAD binding
  • hexose metabolic process
  • carbohydrate biosynthetic process
  • monosaccharide metabolic process
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