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{{Template:Paulsson header}} | {{Template:Paulsson header}} | ||
=Paulsson Lab Strain Collection= | |||
* Location | * Location | ||
# Electronic: Excel file at PAULSSON LAB\STRAINS\Paulsson_Strains | # Electronic: Excel file at PAULSSON LAB\STRAINS\Paulsson_Strains | ||
# Physical: | # Physical: | ||
*** Boxes: -80°C freezer in , bottom shelf, labeled "JP 1" | |||
*** Plates: -80°C freezer in , bottom shelf, labeled "96 A" | |||
*** Duplicates: somewhere in the Kishony Lab | |||
* Criteria for inclusion | * Criteria for inclusion | ||
# Received from | # Published (always!) | ||
# Sent to another lab (always!) | |||
# Received from another lab (most often, but use your judgement as to general utility) | |||
# Useful (characterized parts; eg. fluorescent proteins, promoters) | # Useful (characterized parts; eg. fluorescent proteins, promoters) | ||
* Guidelines | * Duplicates in the Kishony Lab freezer | ||
# For strains carrying plasmids, please add plasmid sequence files to PAULSSON LAB\ | # All published strains | ||
# Precious strains that seem worth it | |||
# The JP collection in the Kishony lab should be maintained in numerical order (discontinuous) | |||
* Guidelines | |||
# For strains carrying plasmids, please add plasmid sequence files to PAULSSON LAB\DNA_sequences (if available) | |||
# Antibiotic conventions: Ap (ampicillin), Kn (kanamycin), Cm (chloramphenicol), Tet (tetracyline), Spc (spectinomycin), Str (streptinomycin), Gm (gentamycin), Rif (rifampicin), Nal (naladixic acid), | # Antibiotic conventions: Ap (ampicillin), Kn (kanamycin), Cm (chloramphenicol), Tet (tetracyline), Spc (spectinomycin), Str (streptinomycin), Gm (gentamycin), Rif (rifampicin), Nal (naladixic acid), | ||
=Sending and Receiving strains= | |||
[[Paulsson:Shipping | Sending and Receiving strains]]<BR> | [[Paulsson:Shipping | Sending and Receiving strains]]<BR> | ||
=Strains= | |||
*[[Paulsson:-80freezer | freezer map]]<br> | *[[Paulsson:-80freezer | freezer map]]<br> | ||
*[http://openwetware.org/wiki/E._coli_genotypes E. coli Genotypes] | *[http://openwetware.org/wiki/E._coli_genotypes E. coli Genotypes] | ||
{| class="wikitable" style="text-align:left" | |||
!width=" | ===Shay's strains=== | ||
{| class="wikitable" style="text-align:left" | |||
!width="70"|Name | |||
!width="90"|Background | !width="90"|Background | ||
!width="150"|Genotype | !width="150"|Genotype | ||
!width="150"|Plasmid(s) | !width="150"|Plasmid(s) | ||
!width=" | !width="250"|Note | ||
|- | |- | ||
|ST1 | |||
|DH5α | |||
| | | | ||
| | |pUC19 | ||
| | | | ||
|- | |- | ||
| | |ST2 | ||
|DH5α | |||
| | | | ||
|pKN1562 | |||
|R1, par-, KanR | |||
|- | |||
|ST3 | |||
|DH5α | |||
| | | | ||
| | |pBEU17 | ||
| | |R1, ts runaway | ||
|- | |- | ||
|ST4 | |||
|MG1655 | |||
| | | | ||
| | |??? | ||
| | |"pAmp-ts CFP (ptet22) in MG1655 yfp (??)" | ||
|- | |- | ||
|ST5 | |||
|DH5α | |||
| | | | ||
| | |pBR322 | ||
| | | | ||
|- | |- | ||
|ST6 | |||
|DH5α | |||
| | | | ||
| | |pTH18kr | ||
| | | | ||
|- | |- | ||
| | |ST7 | ||
|DH5α | |DH5α | ||
| | | | ||
| | |pTH18ks1 | ||
| | | | ||
|- | |- | ||
| | |ST8 | ||
|DH5α | |DH5α | ||
| | | | ||
| | |pTH18ks5 | ||
| | | | ||
|- | |- | ||
| | |ST9 | ||
|DH5α | |DH5α | ||
| | | | ||
| | |pKH19ks1 | ||
| | | | ||
|- | |- | ||
| | |ST10 | ||
|DH5α | |DH5α | ||
| | | | ||
| | |pTH19ks5 | ||
| | | | ||
|- | |- | ||
|ST11 | |||
|T1(MGZ2) | |||
|TetR, LacI | |||
|p(of ST11), Ptet-Citrus | |||
|Z2 is Silhavy modified version of Bernard Lutz Z1 repressor insert | |||
|- | |||
|ST12 | |||
|MC1061 | |||
| | | | ||
| | |p(of ST12), Ptet-Citrus | ||
| | | | ||
| | |- | ||
|ST13 | |||
|MC1061(L4) | |||
|TetR, LacI | |||
|p(of ST13), Plac-Citrus | |||
| | | | ||
|- | |- | ||
|ST14 | |||
|MC1061 | |||
| | | | ||
| | |p(of ST14), Plac-Citrus | ||
| | | | ||
| | |- | ||
|ST15 | |||
|MC1061 | |||
| | | | ||
|pST15 | |||
|pTSrep + RNAI | |||
|- | |- | ||
| | |ST51 | ||
|CSH50 | |||
| | | | ||
|pKG339 | |||
| | | | ||
|- | |- | ||
| | |ST52 | ||
| | |MC1061 | ||
| | | | ||
| | |pST52 | ||
| | | | ||
|- | |- | ||
| | |ST55 | ||
| | |PMB27 | ||
| | | | ||
| | |pST52 / pST54 | ||
| | | | ||
|- | |- | ||
| | |ST61 | ||
| | |CSH50 | ||
| | | | ||
|pKG339 / pST54 | |||
| | | | ||
| | |} | ||
===Juan's strains=== | |||
{| class="wikitable" style="text-align:left" | |||
!width="70"|Name | |||
!width="90"|Background | |||
!width="150"|Genotype | |||
!width="150"|Plasmid(s) | |||
!width="250"|Note | |||
|- | |- | ||
| | |JM100 | ||
| | |=MG1655 | ||
| | | | ||
| | | | ||
| | | Sequenced | ||
|- | |- | ||
| | |JM101 | ||
| | |MG1655 | ||
| | | DFimH | ||
| | | | ||
| | |=PMB 245 | ||
|- | |- | ||
| | |JM102 | ||
| | |MG1655 | ||
|DFimH DFlhD | |||
| | |||
| | | | ||
|- | |- | ||
| | |JM103 | ||
|MG1655 | |MG1655 | ||
| | |DFimA | ||
| | | | ||
| | |=PMB 245 | ||
|- | |- | ||
| | |JM104 | ||
|MG1655 | |MG1655 | ||
| | |DFimH DFlhD DFlu::Cm | ||
| | | | ||
| | |R: Chlm (1) | ||
|- | |- | ||
| | |JM105 | ||
| | |MG1655 | ||
| | |DFimH DFlhD DFlu::Cm DGlgA | ||
| | | | ||
| | |R: Chlm (1) | ||
|} | |||
===Per's strains=== | |||
====Box1==== | |||
{| class="wikitable" style="text-align:left" | |||
!width="70"|Name | |||
!width="90"|Background | |||
!width="150"|Genotype | |||
!width="150"|Plasmid(s) | |||
!width="250"|Note | |||
|- | |- | ||
| | |PMB1 | ||
| | |DH5α | ||
| | | | ||
|pKS390 | |||
| | | | ||
|- | |- | ||
| | |PMB2 | ||
| | |DH5α | ||
| | | | ||
|pKS391 | |||
| | | | ||
|- | |- | ||
| | |PMB3 | ||
| | |DH5α | ||
| | | | ||
| | |pKS392 | ||
| | | | ||
|- | |- | ||
| | |PMB4 | ||
|DH5α | |||
| | |||
| | | | ||
|pKS393 | |||
| | | | ||
|- | |- | ||
| | |PMB5 | ||
| | |DH5α | ||
| | | | ||
| | |pKS394 | ||
| | | | ||
|- | |- | ||
| | |PMB6 | ||
| | |DH5α | ||
| | | | ||
| | |pKS395 | ||
| | | | ||
|- | |- | ||
| | |PMB7 | ||
| | |DH5α | ||
| | | | ||
| | |pKS396 | ||
| | | | ||
|- | |- | ||
| | |PMB8 | ||
| | |DH5α | ||
| | | | ||
| | |pKS397 | ||
| | | | ||
|- | |- | ||
| | |PMB9 | ||
| | |DH5α | ||
| | | | ||
| | |pKS398 | ||
| | | | ||
|- | |- | ||
| | |PMB10 | ||
| | |DH5α | ||
| | | | ||
| | |pKS399 | ||
| | | | ||
|- | |- | ||
| | |PMB11 | ||
| | |DH5α | ||
| | | | ||
| | | | ||
| | | | ||
|- | |- | ||
| | |PMB12 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | | | ||
| | |from Beckwith/Hochschild Lab | ||
|- | |- | ||
| | |PMB13 | ||
| | |?? | ||
| | | | ||
| | | | ||
| | |"*" cured of plasmid; colonies much smaller than MG1655; MC1061? | ||
|- | |- | ||
| | |PMB14 | ||
| | |T1(MGZ2) | ||
| | | | ||
| | | | ||
| | |ST11 cured of plasmid | ||
|- | |- | ||
|PMB15 | |||
|ER2925 | |ER2925 | ||
| | | | ||
| | | | ||
| | |from NEB | ||
|- | |- | ||
| | |PMB16 | ||
| | |DH5-alpha | ||
| | | | ||
| | |pSC101-ts | ||
| | | | ||
|- | |- | ||
| | |PMB17 | ||
| | |MC1061 | ||
| | | | ||
| | |pSC101-ts | ||
| | | | ||
|- | |- | ||
| | |PMB18 | ||
| | |XL1-Blue | ||
| | | | ||
| | | | ||
| | | | ||
|- | |- | ||
| | |PMB19 | ||
|TOP10 | |||
| | | | ||
| | | | ||
| | | | ||
|- | |- | ||
| | |PMB20 | ||
| | |TOP10 | ||
| | | | ||
|pCR2.1 w/Citrus-ssrA(#9) | |||
| | | | ||
|- | |- | ||
| | |PMB21 | ||
| | |MC1061 | ||
| | | | ||
|pPM1 | |||
| | | | ||
|- | |- | ||
| | |PMB22 | ||
| | |MC1061 | ||
| | |||
|pPM2 | |||
| | | | ||
|- | |- | ||
| | |PMB23 | ||
| | |MC1061 | ||
| | |||
|pPM3 | |||
| | | | ||
|- | |- | ||
| | |PMB24 | ||
| | |MC1061 | ||
| | | | ||
|pPM4 | |||
| | | | ||
|- | |- | ||
| | |PMB25 | ||
|MC1061 | |||
| | |||
|pPM5 | |||
| | | | ||
|- | |- | ||
| | |PMB26 | ||
|MC1061 | |||
| | | | ||
| | |pPM6 | ||
| | | | ||
|- | |- | ||
| | |PMB27 | ||
| | |MC1061(L4) | ||
|TetR and LacI | |||
| | | | ||
| | |ST13 cured of plasmid | ||
|- | |||
|PMB28 | |||
|PMB14 | |||
| | | | ||
| | |pPM3 | ||
| | | | ||
|- | |- | ||
| | |PMB29 | ||
| | |PMB14 | ||
| | | | ||
| | |pPM5 | ||
| | | | ||
|- | |- | ||
| | |PMB30 | ||
| | |PMB27 | ||
| | | | ||
| | |pPM4 | ||
| | | | ||
|- | |- | ||
| | |PMB31 | ||
| | |PMB27 | ||
| | | | ||
| | |pPM6 | ||
| | | | ||
|- | |- | ||
| | |PMB32 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM7 | ||
| | | | ||
|- | |- | ||
| | |PMB33 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM8 | ||
| | | | ||
|- | |- | ||
| | |PMB34 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM9 | ||
| | | | ||
|- | |- | ||
| | |PMB35 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM10 | ||
| | | | ||
|- | |- | ||
| | |PMB36 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM11 | ||
| | | | ||
|- | |- | ||
| | |PMB37 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM12 | ||
| | | | ||
|- | |- | ||
| | |PMB38 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM13 | ||
| | | | ||
|- | |- | ||
| | |PMB39 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM14 | ||
| | | | ||
|- | |- | ||
| | |PMB40 | ||
| | |PMB14 | ||
| | |||
|pPM13 | |||
| | | | ||
|- | |- | ||
| | |PMB41 | ||
| | |PMB27 | ||
| | | | ||
| | |pPM14 | ||
| | | | ||
|- | |- | ||
| | |PMB42 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | | | ||
|from Kolter Lab | |||
|- | |- | ||
| | |PMB43 | ||
| | |MC1061 | ||
| | | | ||
| | |p(Silver's Venus), from Ian | ||
| | | | ||
|- | |- | ||
| | |PMB44 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM15 | ||
| | |||
|- | |||
|PMB45 | |||
|MC1061 | |||
| | |||
|pPM16 | |||
| | | | ||
|- | |- | ||
| | |PMB46 | ||
| | |DH5α | ||
| | |||
|pUB23-R | |||
| | | | ||
|- | |- | ||
| | |PMB47 | ||
| | |DH5α | ||
| | | | ||
| | |pUB23-L | ||
| | | | ||
|- | |- | ||
| | |PMB48 | ||
| | |DH5α | ||
| | | | ||
| | |pUB23-M | ||
| | | | ||
|- | |- | ||
| | |PMB49 | ||
| | |DH5α | ||
| | | | ||
| | |pJT184 (CmR) | ||
| | | | ||
|- | |- | ||
| | |PMB50 | ||
| | |PMB14 | ||
| | | | ||
| | |pJT184 (CmR) | ||
| | | | ||
|- | |- | ||
| | |PMB51 | ||
|DH5α | |DH5α | ||
| | | | ||
| | |pUB23-K | ||
| | | | ||
|- | |- | ||
| | |PMB52 | ||
|DH5α | |DH5α | ||
| | | | ||
| | |pYPet-His (CmR) | ||
| | |||
| | | | ||
|- | |- | ||
| | |PMB53 | ||
|DH5α | |DH5α | ||
| | | | ||
| | |pCyPet-His (CmR) | ||
| | |||
| | | | ||
|- | |- | ||
| | |PMB54 | ||
| | |PMB14 | ||
| | |||
|pPM15 | |||
| | | | ||
| | | | ||
|- | |- | ||
| | |PMB55 | ||
| | |PMB27 | ||
| | |||
|pPM16 | |||
| | | | ||
| | | | ||
|- | |- | ||
| | |PMB56 | ||
| | | | ||
| | | | ||
| | | | ||
| | | | ||
|- | |- | ||
| | |PMB57 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM17 | ||
| | | | ||
| | | | ||
|- | |- | ||
| | |PMB58 | ||
| | |MC1061 | ||
| | | | ||
|pPM18 | |||
| | | | ||
| | | | ||
|- | |- | ||
| | |PMB59 | ||
|MC1061 | |MC1061 | ||
| | |||
|pPM19 | |||
| | | | ||
| | | | ||
|- | |- | ||
| | |PMB60 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM20 | ||
| | | | ||
| | | | ||
|- | |- | ||
| | |} | ||
| | |||
| | ====Box2==== | ||
| | |||
| | {| class="wikitable" style="text-align:left" | ||
!width="70"|Name | |||
!width="90"|Background | |||
!width="150"|Genotype | |||
!width="150"|Plasmid(s) | |||
!width="300"|Note | |||
|- | |- | ||
| | |PMB62 | ||
| | |MC1061 | ||
| | | | ||
|pPM22 | |||
|240 lacO repeats in pSC101 ts-Rep | |||
|- | |- | ||
| | |PMB63 | ||
|MC1061 | |MC1061 | ||
| | | | ||
|pSC101- | |pPM23 | ||
|24 lacO repeats in pSC101 ts-Rep | |||
|- | |- | ||
| | |PMB64 | ||
|MC1061 | |||
| | |||
| | | | ||
|pPM24 | |||
|24 tetO repeats in pSC101 ts-Rep | |||
|- | |- | ||
| | |PMB65 | ||
|MC1061 | |||
| | |||
| | | | ||
|pPM25 | |||
|120 lacO repeats in pSC101 ts-Rep | |||
|- | |- | ||
| | |PMB66 | ||
| | |MC1061 | ||
| | | | ||
|pPM26 | |||
|120 tetO repeats in pSC101 ts-Rep | |||
|- | |- | ||
| | |PMB67 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM27 | ||
| | |LacI-CFP, TetR-YFP in p15A (CmR, and AmpR!?!), forward | ||
|- | |- | ||
| | |PMB68 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM28 | ||
| | |LacI-CFP, TetR-YFP in p15A (CmR, and AmpR!?!), reverse | ||
|- | |- | ||
| | |PMB69 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM29 | ||
| | |Ptet-mCherry in pSC101 | ||
|- | |- | ||
| | |PMB70 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM30 | ||
|Plac-mCherry in pSC101 | |||
|- | |||
|PMB74 | |||
|PMB14 | |||
| | |||
|pPM29 | |||
| | | | ||
|- | |- | ||
| | |PMB75 | ||
| | |PMB27 | ||
| | | | ||
| | |pPM30 | ||
| | | | ||
|- | |- | ||
| | |PMB76 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM31 | ||
|LacI-YFP in p15A (CmR, and AmpR!?!) | |||
|- | |||
|PMB77 | |||
|MC1061 | |||
| | | | ||
|pPM32 | |||
|LacI-CFP, TetR-YFP in p15A (CmR only) | |||
|- | |- | ||
| | |PMB78 | ||
| | |DH5α | ||
| | | | ||
| | |pPM33 | ||
|LacI-YFP in p15A (CmR only) | |||
|- | |- | ||
| | |PMB79 | ||
|PMB14 | |PMB14 | ||
| | | | ||
| | |pPM34 | ||
| | | | ||
|- | |- | ||
| | |PMB80 | ||
|PMB14 | |PMB14 | ||
| | | | ||
| | |pPM35 | ||
| | | | ||
|- | |- | ||
| | |PMB81 | ||
|PMB27 | |PMB27 | ||
| | | | ||
| | |pPM36 | ||
| | | | ||
|- | |- | ||
| | |PMB82 | ||
|PMB27 | |PMB27 | ||
| | | | ||
| | |pPM37 | ||
| | | | ||
|- | |- | ||
| | |PMB83 | ||
| | |PMB14 | ||
| | | | ||
| | |pPM38 | ||
|Ptet-mCherry in pSC101 ts-Rep | |||
|- | |||
|PMB84 | |||
|PMB27 | |||
| | | | ||
|pPM39 | |||
|Plac-mCherry in pSC101 ts-Rep | |||
|- | |- | ||
| | |PMB85 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM40 | ||
| | | | ||
|- | |- | ||
| | |PMB86 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM41 | ||
| | | | ||
|- | |- | ||
| | |PMB87 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM42 | ||
| | | | ||
|- | |- | ||
| | |PMB89 | ||
| | |ECF259 | ||
| | | | ||
| | |pPM32 | ||
| | | | ||
|- | |- | ||
| | |PMB90 | ||
| | |AB1157 | ||
| | | | ||
| | |pPM32 | ||
| | | | ||
|- | |- | ||
| | |PMB91 | ||
| | |AB1157 | ||
| | | | ||
| | |pPM33 | ||
| | | | ||
|- | |- | ||
| | |PMB92 | ||
| | |AB1157 | ||
| | |||
|pLAU53 | |||
| | | | ||
| | | | ||
|- | |- | ||
| | |PMB93 | ||
| | |AB1157 | ||
| | | | ||
| | |pPM32/pPM24 | ||
| | | | ||
|- | |- | ||
| | |PMB94 | ||
| | |AB1157 | ||
| | | | ||
| | |pPM32/pPM26 | ||
| | | | ||
|- | |- | ||
| | |PMB95 | ||
| | |AB1157 | ||
| | | | ||
|pPM33/pPM22 | |||
| | | | ||
|- | |- | ||
| | |PMB96 | ||
| | |AB1157 | ||
| | | | ||
| | |pPM33/pPM23 | ||
| | | | ||
|- | |- | ||
| | |PMB97 | ||
| | |AB1157 | ||
| | | | ||
| | |pPM33/pPM25 | ||
| | | | ||
|- | |- | ||
| | |PMB98 | ||
| | |PMB14 | ||
| | | | ||
| | |pPM40 | ||
| | | | ||
|- | |- | ||
| | |PMB99 | ||
| | |PMB14 | ||
| | | | ||
| | |pPM41 | ||
| | | | ||
|- | |- | ||
| | |PMB100 | ||
| | |PMB14 | ||
| | | | ||
| | |pST26 | ||
|same as ST??? | |||
|- | |||
|PMB101 | |||
|PMB14 | |||
| | | | ||
|pST28 | |||
|same as ST??? | |||
|- | |- | ||
| | |PMB102 | ||
| | |MC4100 | ||
|galK::Plac-CFP | |||
| | | | ||
| | |Hegreness et al., Science '06, via Kishony Lab | ||
|- | |||
|PMB103 | |||
|MC4100 | |||
|galK::Plac-YFP | |||
| | | | ||
|Hegreness et al., Science '06, via Kishony Lab | |||
|- | |- | ||
| | |PMB104 | ||
| | |PMB27 | ||
| | |galK::Plac-CFP | ||
| | | | ||
|PMB102 transduced into PMB27; not confirmed by PCR, only by CFP expression | |||
|- | |- | ||
| | |PMB105 | ||
| | |PMB27 | ||
| | |galK::Plac-YFP | ||
| | | | ||
|PMB103 transduced into PMB27; not confirmed by PCR, only by YFP expression | |||
|- | |- | ||
| | |PMB106 | ||
| | |PMB104 | ||
| | | | ||
|pST27 | |||
|(Plac-Citrus on R1, par-) | |||
|- | |- | ||
| | |PMB107 | ||
|PMB104 | |||
| | |||
| | | | ||
|pPM41 | |||
|(Plac-Citrus on mini-F) | |||
|- | |- | ||
| | |PMB108 | ||
|PMB105 | |||
| | |||
| | | | ||
|pST29 | |||
|(Plac-mCherry on R1, par-) | |||
|- | |- | ||
| | |PMB110 | ||
|PMB27 | |||
| | |||
| | | | ||
|pST27 | |||
|(Plac-Citrus on R1, par-) | |||
|- | |- | ||
| | |PMB111 | ||
|PMB27 | |PMB27 | ||
| | | | ||
| | |pST29 | ||
|(Plac-mCherry on R1, par-) | |||
| | |||
|- | |- | ||
| | |PMB112 | ||
|PMB104 | |||
| | | | ||
|pST26 | |||
|(Ptet-Citrus on R1, par-) | |||
|- | |||
|PMB113 | |||
|PMB104 | |||
| | | | ||
|pPM40 | |||
|(Ptet-Citrus on mini-F) | |||
|- | |||
|PMB114 | |||
|PMB105 | |||
| | | | ||
|pST28 | |||
|(Ptet-mCherry on R1, par-) | |||
|- | |||
|PMB115 | |||
|PMB105 | |||
| | | | ||
|pPM42 | |||
|(Ptet-mCherry on mini-F) | |||
|- | |- | ||
| | |PMB116 | ||
|PMB104 | |||
| | |||
| | | | ||
|pPM40/pST28 | |||
|(Ptet-Citrus on mini-F; Ptet-mCherry on R1,par-) | |||
|- | |- | ||
| | |PMB117 | ||
|PMB104 | |||
| | |||
| | | | ||
|pPM40/pST29 | |||
|(Ptet-Citrus on mini-F; Plac-mCherry on R1,par-) | |||
|- | |- | ||
| | |PMB118 | ||
| | |PMB107 | ||
| | | | ||
|pPM41/pST28 | |||
|(Plac-Citrus on mini-F; Ptet-mCherry on R1,par-) | |||
|- | |||
|PMB119 | |||
|PMB107 | |||
| | | | ||
|pPM41/pST29 | |||
|(Plac-Citrus on mini-F; Plac-mCherry on R1,par-) | |||
|- | |||
|PMB120 | |||
|PMB14 | |||
| | |||
|pPM42 | |||
|(Ptet-mCherry on mini-F) | |||
|- | |- | ||
| | |PMB121 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM43 | ||
| | | | ||
|- | |- | ||
| | |PMB122 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM44 | ||
| | | | ||
|- | |- | ||
| | |PMB123 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM45 | ||
| | | | ||
|- | |- | ||
| | |PMB124 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM46 | ||
| | | | ||
|- | |- | ||
| | |PMB125 | ||
| | |PMB14 | ||
| | | | ||
| | |pPM43 | ||
| | |(Ptet-YPet on pSC101, ts-Rep) | ||
|- | |- | ||
| | |PMB126 | ||
| | |PMB27 | ||
| | | | ||
| | |pPM44 | ||
| | |(Plac-YPet on pSC101, ts-Rep) | ||
|- | |- | ||
| | |PMB127 | ||
| | |PMB14 | ||
| | | | ||
| | |pPM45 | ||
| | |(Ptet-YPet on pSC101) | ||
|- | |- | ||
| | |PMB128 | ||
| | |PMB27 | ||
| | | | ||
| | |pPM46 | ||
| | |(Plac-YPet on pSC101) | ||
|- | |- | ||
| | |PMB129 | ||
| | |PMB14 | ||
| | |||
|pST26/pPM30 | |||
| | | | ||
|- | |- | ||
| | |PMB130 | ||
| | |PMB27 | ||
| | | | ||
|pPM30 | |pST26/pPM30 | ||
| | |(Ptet-Citrus on R1, par-; Ptet-mCherry on pSC101) | ||
|- | |- | ||
| | |PMB131 | ||
|PMB14 | |PMB14 | ||
| | | | ||
| | |pPM11 | ||
| | | | ||
|- | |- | ||
| | |PMB132 | ||
|PMB27 | |PMB27 | ||
| | | | ||
| | |pPM12 | ||
| | | | ||
|- | |- | ||
| | |} | ||
| | |||
====Box3==== | |||
{| class="wikitable" style="text-align:left" | |||
!width="70"|Name | |||
!width="90"|Background | |||
!width="150"|Genotype | |||
!width="150"|Plasmid(s) | |||
!width="300"|Note | |||
|- | |||
|PMB133 | |||
|PMB14 | |||
| | | | ||
| | |pST26/pPM42 | ||
| | | | ||
|- | |- | ||
| | |PMB134 | ||
| | |ST51 | ||
| | | | ||
| | |pST26 | ||
| | |ST51 is CSH50/pKG339 (Plac-copA from Gerdes) | ||
|- | |- | ||
| | |PMB135 | ||
| | |ST51 | ||
| | | | ||
| | |pST28 | ||
| | | | ||
|- | |- | ||
| | |PMB136 | ||
|PMB14 | |PMB14 | ||
| | | | ||
| | |pST26/pKG339 | ||
| | | | ||
|- | |- | ||
| | |PMB137 | ||
| | |PMB112 | ||
| | | | ||
| | |pKG339 | ||
| | | | ||
|- | |- | ||
| | |PMB138 | ||
| | |PMB114 | ||
| | | | ||
| | |pKG339 | ||
| | | | ||
|- | |- | ||
| | |PMB139 | ||
| | |ST52 | ||
| | | | ||
| | |pST26 | ||
| | | | ||
|- | |- | ||
| | |PMB140 | ||
| | |ST50 | ||
| | | | ||
| | |pKG339 | ||
| | | | ||
|- | |- | ||
| | |PMB141 | ||
| | |ST51 | ||
| | | | ||
| | |pKG491 | ||
| | | | ||
|- | |- | ||
| | |PMB142 | ||
| | |ST51 | ||
| | | | ||
| | |pKN1562 | ||
| | | | ||
|- | |- | ||
| | |PMB143 | ||
| | |ST51 | ||
| | | | ||
| | |pST27 | ||
| | | | ||
|- | |- | ||
| | |PMB144 | ||
| | |PMB12 | ||
| | | | ||
| | |pST52 | ||
| | | | ||
|- | |- | ||
| | |PMB146 | ||
| | |PMB27 | ||
| | | | ||
| | |pST52 | ||
| | | | ||
|- | |- | ||
| | |PMB147 | ||
| | |PMB27 | ||
| | |||
|pST52/pKN1562 | |||
| | | | ||
| | |- | ||
|PMB148 | |||
|PMB27 | |||
| | | | ||
|pKG339 | |||
| | | | ||
|- | |- | ||
| | |PMB149 | ||
| | |PMB27 | ||
| | | | ||
| | |pKG339/pST26 | ||
| | | | ||
|- | |- | ||
| | |PMB150 | ||
| | |PMB27 | ||
| | | | ||
| | |pKG339/pKG491 | ||
| | | | ||
|- | |- | ||
| | |CSH50 | ||
| | | | ||
| | | | ||
| | | | ||
|"CHS50" generated by curing plasmid from ST51 | |||
|- | |- | ||
| | |PMB151 | ||
| | |CSH50 | ||
| | | | ||
| | |pST52 | ||
| | | | ||
|- | |- | ||
| | |PMB152 | ||
| | |CSH50 | ||
| | | | ||
| | |pST52/pKN1562 | ||
| | | | ||
|- | |- | ||
| | |PMB153 | ||
| | |CSH50 | ||
| | | | ||
| | |pKG339 | ||
| | | | ||
|- | |- | ||
| | |PMB154 | ||
| | |CSH50 | ||
| | | | ||
| | |pKG339/pKN1562 | ||
| | | | ||
|- | |- | ||
| | |PMB155*** | ||
| | |CSH50 | ||
| | | | ||
| | |pKG339/pKG491 | ||
| | |***(may be bad?!AmpR/IPTG-res subpopulation) | ||
|- | |- | ||
| | |PMB156 | ||
| | |PMB27 | ||
| | |||
|pST26 | |||
| | | | ||
|- | |- | ||
| | |PMB157 | ||
| | |PMB27 | ||
| | | | ||
| | |pKG491 | ||
| | | | ||
|- | |- | ||
| | |PMB158 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM47 | ||
| | | | ||
|- | |- | ||
| | |PMB159 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM48 | ||
| | | | ||
|- | |- | ||
| | |PMB160 | ||
| | |MC1061 | ||
|attTn7::Ptet-mCherry | |||
| | |||
| | |||
|- | |||
|PMB161 | |||
|MC1061 | |||
|attTn7::Plac-mCherry | |||
| | |||
| | | | ||
|- | |- | ||
| | |PMB162 | ||
|PMB27 | |PMB27 | ||
|attTn7::Ptet-mCherry | |||
| | |||
| | | | ||
|- | |- | ||
| | |PMB163 | ||
|PMB27 | |PMB27 | ||
|attTn7::Plac-mCherry | |||
| | | | ||
| | | | ||
|- | |- | ||
| | |PMB164 | ||
| | |PMB14 | ||
|attTn7::Ptet-mCherry | |||
| | | | ||
| | | | ||
|- | |- | ||
| | |PMB165 | ||
| | |PMB27 | ||
|attTn7::Ptet-mCherry | |||
|pST26 | |||
| | |||
| | | | ||
|- | |- | ||
| | |PMB166 | ||
| | |PMB27 | ||
|attTn7::Plac-mCherry | |||
|pST27 | |||
| | | | ||
|- | |- | ||
| | |PMB167 | ||
| | |PMB14 | ||
|attTn7::Ptet-mCherry | |||
|pST26 | |||
| | | | ||
|- | |- | ||
| | |PMB168 | ||
| | |PMB27 | ||
|attTn7::Ptet-mCherry | |||
|pST26/pST52 | |||
| | |||
| | | | ||
|- | |- | ||
| | |PMB169 | ||
| | |PMB27 | ||
|attTn7::Plac-mCherry | |||
|pST27/pST52 | |||
| | | | ||
|- | |- | ||
| | |PMB170 | ||
|PMB14 | |PMB14 | ||
|attTn7::Ptet-mCherry | |||
|pST26/pST52 | |||
| | | | ||
|- | |- | ||
| | |PMB171 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pKGCm | ||
| | | | ||
|- | |- | ||
| | |PMB173 | ||
| | |CSH50 | ||
| | | | ||
| | |pKGCm | ||
| | | | ||
|- | |- | ||
| | |PMB175 | ||
| | |MC4100 | ||
| | | | ||
| | |pKGCm | ||
| | | | ||
|- | |- | ||
| | |PMB177 | ||
| | |AB1157 | ||
| | | | ||
| | |pKG339 | ||
| | | | ||
|- | |- | ||
| | |PMB178 | ||
| | |AB1157 | ||
| | |||
|pKG339/pKG491 | |||
| | | | ||
|- | |- | ||
| | |PMB179 | ||
| | |MC4100 | ||
| | |||
|pKG339 | |||
| | | | ||
|- | |- | ||
| | |PMB180 | ||
| | |MC4100 | ||
| | |||
|pKG339/pKG491 | |||
| | | | ||
|- | |- | ||
| | |PMB181 | ||
| | |MG1655 | ||
| | |||
|pKG339 | |||
| | | | ||
|- | |- | ||
| | |PMB182 | ||
| | |MG1655 | ||
| | | | ||
| | |pKG339/pKG491 | ||
| | | | ||
|- | |- | ||
| | |PMB183 | ||
| | |W3110 | ||
| | |||
|pKG339 | |||
| | | | ||
|- | |- | ||
| | |PMB184 | ||
| | |W3110 | ||
| | |||
|pKG339/pKG491 | |||
| | | | ||
| | |- | ||
|PMB185 | |||
|MC1061 | |||
|''forthcoming'' | |||
|pPM49 | |||
| | | | ||
|- | |- | ||
| | |PMB186 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM50 | ||
| | |||
|- | |||
|PMB187 | |||
|MC1061 | |||
| | |||
|pPM51 | |||
| | |||
|- | |||
|PMB188 | |||
|MC1061 | |||
| | |||
|pPM52 | |||
| | |||
|- | |||
|PMB189 | |||
|MC1061 | |||
| | |||
|pPM53 | |||
| | |||
|- | |||
|PMB190 | |||
|MC1061 | |||
| | |||
|pPM54 | |||
| | | | ||
|- | |- | ||
|} | |} | ||
==== | ====Box4==== | ||
{| class="wikitable" style="text-align:left" | {| class="wikitable" style="text-align:left" | ||
!width="70"|Name | !width="70"|Name | ||
Line 1,388: | Line 1,339: | ||
!width="300"|Note | !width="300"|Note | ||
|- | |- | ||
| | |PMB191 | ||
| | |CSH50 | ||
| | | | ||
| | |pPM54 | ||
| | | | ||
|- | |- | ||
| | |PMB192 | ||
| | |DJ480 | ||
| | |||
|pKG339 | |||
| | | | ||
|- | |- | ||
| | |PMB193 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM54 | ||
| | | | ||
|- | |- | ||
| | |PMB194 | ||
| | |CSH50 | ||
| | | | ||
| | |pKG339/pPM50 | ||
| | | | ||
|- | |- | ||
| | |PMB195 | ||
| | |CSH50 | ||
| | | | ||
|pKG339 | |pKG339/pPM51 | ||
| | | | ||
|- | |- | ||
| | |PMB196 | ||
| | |CSH50 | ||
| | | | ||
|pKG339 | |pKG339/pPM52 | ||
| | | | ||
|- | |- | ||
| | |PMB197 | ||
| | |CSH50 | ||
| | | | ||
| | |pPM54/pKG491 | ||
| | | | ||
|- | |- | ||
| | |PMB198 | ||
| | |DJ480 | ||
| | | | ||
|pKG339 | |pKG339/pKG491 | ||
| | | | ||
|- | |- | ||
| | |PMB199 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM54/pPM50 | ||
| | | | ||
|- | |- | ||
| | |PMB200 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM54/pPM51 | ||
| | | | ||
|- | |- | ||
| | |PMB201 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM54/pPM52 | ||
| | | | ||
|- | |- | ||
| | |PMB202 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM54/pKG491 | ||
| | | | ||
|- | |- | ||
| | |PMB203 | ||
| | |MC1061 | ||
| | |||
|pPM55 | |||
| | | | ||
| | |- | ||
|PMB204 | |||
|MC1061 | |||
| | | | ||
|pPM56 | |||
|clone 1 (also preserved PMB204 with clone 3) | |||
|- | |- | ||
| | |PMB205 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM57 | ||
| | | | ||
|- | |- | ||
| | |PMB206 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM58 | ||
| | | | ||
|- | |- | ||
| | |PMB207 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM59 | ||
| | | | ||
|- | |- | ||
| | |PMB208 | ||
| | |PM27 | ||
| | | | ||
| | |pPM60 | ||
| | | | ||
|- | |- | ||
| | |PMB209 | ||
|PM27 | |||
| | |||
|pPM61 | |||
| | | | ||
|- | |||
|PMB210 | |||
|PM27 | |||
| | | | ||
|pPM62 | |||
| | | | ||
|- | |- | ||
| | |PMB211 | ||
| | |PM27 | ||
| | | | ||
| | |pPM63 | ||
| | | | ||
|- | |- | ||
| | |PMB212 | ||
| | |PM27 | ||
| | | | ||
| | |pPM64 | ||
| | | | ||
|- | |- | ||
| | |PMB213 | ||
| | |PM27 | ||
| | | | ||
| | |pPM65 | ||
| | | | ||
|- | |- | ||
| | |PMB214 | ||
| | |PM27 | ||
| | | | ||
| | |pPM66 | ||
| | | | ||
|- | |- | ||
| | |PMB215 | ||
| | |PM27 | ||
| | | | ||
| | |pPM67 | ||
| | | | ||
|- | |- | ||
| | |PMB216 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM68 | ||
| | | | ||
|- | |- | ||
| | |PMB217 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM54/pPM59 | ||
| | | | ||
|- | |- | ||
| | |PMB218 | ||
| | |PMB27 | ||
| | | | ||
| | |pPM70 | ||
| | | | ||
|- | |- | ||
| | |PMB219 | ||
| | |PMB27 | ||
| | | | ||
|pPM71 | |||
| | | | ||
|- | |- | ||
| | |PMB220 | ||
| | |PMB27 | ||
| | | | ||
|pPM72 | |||
| | | | ||
|- | |- | ||
| | |PMB221 | ||
|PMB27 | |PMB27 | ||
| | | | ||
|pPM73 | |||
| | | | ||
|- | |- | ||
| | |PMB222 | ||
|PMB27 | |PMB27 | ||
| | | | ||
|pPM74 | |||
| | | | ||
|- | |- | ||
| | |PMB223 | ||
| | |CSH50 (Gerdes) | ||
| | |ΔfimA::kan | ||
| | | | ||
|P1 trans. from Keio KO collection | |||
|- | |- | ||
| | |PMB224 | ||
| | |CSH50 (CGSC 8085) | ||
| | |ΔfimA::kan | ||
| | | | ||
|P1 trans. from Keio KO collection | |||
|- | |- | ||
| | |PMB225 | ||
| | |MG1655seq (CGSC 7740) | ||
| | |ΔfimE::kan | ||
| | | | ||
|P1 trans. from Keio KO collection | |||
|- | |- | ||
| | |PMB226 | ||
| | |MG1655seq (CGSC 7740) | ||
| | |ΔthiC::kan | ||
| | | | ||
|P1 trans. from Keio KO collection | |||
|- | |- | ||
| | |PMB227 | ||
| | |PMB223 | ||
| | | | ||
|pKG491 | |||
| | | | ||
|- | |- | ||
| | |PMB228 | ||
| | |CGSC 8085 | ||
| | | | ||
| | |pKG491 | ||
| | | | ||
|- | |- | ||
| | |PMB229 | ||
| | |PMB224 | ||
| | | | ||
| | |pKG491 | ||
| | | | ||
|- | |- | ||
| | |PMB230 | ||
| | |PMB225 | ||
| | | | ||
| | |pKG491 | ||
| | | | ||
|- | |- | ||
| | |PMB231 | ||
| | |PMB226 | ||
| | | | ||
| | |pKG491 | ||
| | | | ||
|- | |- | ||
| | |PMB232 | ||
| | |CGSC 6412 | ||
| | | | ||
| | |pKG491 | ||
| | | | ||
|- | |- | ||
| | |PMB233 | ||
| | |PMB223 | ||
| | | | ||
|pKG339 | |pKG491/pKG339 | ||
| | | | ||
|- | |- | ||
| | |PMB234 | ||
| | |CGSC 8085 | ||
| | | | ||
|pKG339 | |pKG491/pKG339 | ||
| | | | ||
|- | |- | ||
| | |PMB235 | ||
| | |PMB224 | ||
| | | | ||
|pKG339 | |pKG491/pKG339 | ||
| | | | ||
|- | |- | ||
| | |PMB236 | ||
| | |PMB225 | ||
| | | | ||
|pKG339 | |pKG491/pKG339 | ||
| | | | ||
|- | |- | ||
| | |PMB237 | ||
| | |PMB226 | ||
| | | | ||
|pKG339 | |pKG491/pKG339 | ||
| | | | ||
|- | |- | ||
| | |PMB238 | ||
| | |CGSC 6412 | ||
| | | | ||
|pKG339 | |pKG491/pKG339 | ||
| | | | ||
|- | |- | ||
| | |PMB239 | ||
| | |CSH50 (KG) | ||
| | |ΔfimA | ||
| | | | ||
|made by P1 from Keio, marker removed | |||
|- | |||
|PMB240 | |||
|CSH50 (KG) | |||
|ΔfimA | |||
|pPM54 | |||
|made by P1 from Keio, marker removed | |||
|- | |- | ||
| | |PMB241 | ||
| | |CSH50 (CGSC# 8085) | ||
| | |ΔfimA | ||
| | | | ||
|made by P1 from Keio, marker removed | |||
|- | |- | ||
| | |PMB242 | ||
| | |CSH50 (CGSC# 8085) | ||
| | |ΔfimA | ||
| | |pPM54 | ||
| | | | ||
|- | |- | ||
| | |PMB243 | ||
| | |CSH50 (CGSC# 8085) | ||
| | | | ||
| | |pPM54 | ||
| | | | ||
|- | |- | ||
| | |PMB244 | ||
| | |MG1655(seq) | ||
|ΔfimA | |||
| | | | ||
| | |made by P1 from Keio, marker removed | ||
|- | |||
|PMB245 | |||
|MG1655(seq) | |||
|ΔfimH | |||
| | | | ||
|made by P1 from Keio, marker removed | |||
|- | |- | ||
| | |PMB246 | ||
| | |CSH50 (KG) | ||
| | |ΔfimH | ||
| | | | ||
|made by P1 from Keio, marker removed | |||
|- | |- | ||
| | |PMB247 | ||
| | |CSH50 (KG) | ||
| | |DfimH | ||
| | |pPM54 | ||
| | | | ||
|- | |- | ||
| | |PMB248 | ||
|ZK4 | |||
|recA56 | |||
|pPM54 | |||
|MC4100 background | |||
|- | |||
|PMB249 | |||
|ZK356 | |||
|recA1 | |||
|pPM54 | |||
|MC1000 background | |||
|- | |||
|PMB250 | |||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM75 | ||
| | | | ||
|- | |- | ||
| | |PMB251 | ||
|MC1061 | |||
| | |||
| | | | ||
| | |pPM76 | ||
| | | | ||
|- | |- | ||
| | |PMB252 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM77 | ||
| | | | ||
|- | |- | ||
| | |PMB253 | ||
| | |CGSC# 7740 | ||
| | | | ||
| | |pKG491 | ||
| | | | ||
|- | |- | ||
| | |PMB254 | ||
| | |DJ480 | ||
| | | | ||
| | |pKG491 | ||
| | | | ||
|- | |- | ||
| | |PMB255 | ||
| | |PMB239 | ||
| | | | ||
| | |pPM54/pKG491 | ||
| | | | ||
|- | |- | ||
| | |PMB256 | ||
| | |PMB246 | ||
| | | | ||
| | |pPM54/pKG491 | ||
| | | | ||
|- | |- | ||
| | |PMB257 | ||
| | |MC1061 | ||
| | | | ||
|pPM78 | |||
|clone 1 | |||
|- | |- | ||
| | |PMB258 | ||
| | |MC1061 | ||
| | | | ||
|pPM79 | |||
|clone 3' | |||
|- | |- | ||
| | |PMB259 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM80-3 | ||
| | | | ||
|- | |- | ||
| | |PMB260 | ||
| | |MC1061 | ||
| | | | ||
|pPM82 | |||
|clone 1 | |||
|- | |- | ||
| | |PMB261 | ||
| | |MC1061 | ||
| | | | ||
|pPM83 | |||
|''clone 1'' (also preserved PMB261 with clone 2) | |||
|- | |- | ||
| | |PMB262 | ||
| | |MC1061 | ||
| | | | ||
|pPM84 | |||
|clone 3 | |||
|- | |- | ||
| | |PMB263 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM85 | ||
| | |clone 2 | ||
|- | |- | ||
| | |PMB264 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM86 | ||
| | | | ||
|- | |- | ||
| | |PMB265 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM87 | ||
| | | | ||
|- | |- | ||
| | |PMB266 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM80-2 | ||
| | | | ||
|- | |- | ||
| | |PMB267 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM90 | ||
| | |clone 4 | ||
|- | |- | ||
| | |PMB268 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM88 | ||
|clone 2 | |||
|- | |||
|PMB269 | |||
|MC1061 | |||
| | | | ||
|pPM89 | |||
|clone 1 | |||
|- | |- | ||
| | |PMB270 | ||
| | |MC1061 | ||
| | | | ||
|pPM88 | |||
|clone 1 | |||
|- | |||
|} | |||
====Box5==== | |||
{| class="wikitable" style="text-align:left" | |||
!width="70"|Name | |||
!width="90"|Background | |||
!width="150"|Genotype | |||
!width="150"|Plasmid(s) | |||
!width="300"|Note | |||
|- | |- | ||
| | |PMB271 | ||
| | |CSH50(KG) | ||
| | | | ||
| | |pKG491/pPM82 | ||
| | | | ||
|- | |- | ||
| | |PMB272 | ||
| | |CSH50(KG) | ||
| | | | ||
| | |pKG491/pPM75 | ||
| | | | ||
|- | |- | ||
| | |PMB273 | ||
| | |CSH50(KG) | ||
| | | | ||
| | |pKG491/pPM83 | ||
| | | | ||
|- | |- | ||
| | |PMB274 | ||
| | |DJ480 | ||
| | | | ||
| | |pKG491/pPM82 | ||
| | | | ||
|- | |- | ||
| | |PMB275 | ||
| | |DJ480 | ||
| | | | ||
| | |pKG491/pPM75 | ||
| | | | ||
|- | |- | ||
| | |PMB276 | ||
| | |DJ480 | ||
| | | | ||
| | |pKG491/pPM83 | ||
| | | | ||
|- | |- | ||
| | |PMB277 | ||
| | |CGSC#7740 | ||
| | | | ||
| | |pKG491/pPM54 | ||
| | | | ||
|- | |- | ||
| | |PMB278 | ||
| | |CGSC#7740 | ||
| | | | ||
| | |pKG491/pPM82 | ||
| | | | ||
|- | |- | ||
| | |PMB279 | ||
| | |CGSC#7740 | ||
| | | | ||
| | |pKG491/pPM75 | ||
| | | | ||
|- | |- | ||
| | |PMB280 | ||
| | |CGSC#7740 | ||
| | | | ||
| | |pKG491/pPM83 | ||
| | | | ||
|- | |- | ||
| | |PMB281 | ||
| | |CSH50 | ||
| | | | ||
| | |pPM78 | ||
| | | | ||
|- | |- | ||
| | |PMB282 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM78 | ||
| | | | ||
|- | |- | ||
| | |PMB283 | ||
| | |CSH50 | ||
| | | | ||
| | |pPM77 | ||
| | | | ||
|- | |- | ||
| | |PMB284 | ||
| | |DJ480 | ||
| | | | ||
|pPM77 | |||
| | | | ||
|- | |- | ||
| | |PMB285 | ||
|CSH50 | |CSH50 | ||
| | | | ||
| | |pPM86 | ||
| | | | ||
|- | |- | ||
| | |PMB286 | ||
| | |DJ480 | ||
| | | | ||
|pPM86 | |||
| | | | ||
|- | |- | ||
| | |PMB287 | ||
| | |CSH50 | ||
| | | | ||
| | |pPM87 | ||
| | | | ||
|- | |- | ||
| | |PMB288 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM87 | ||
| | | | ||
|- | |- | ||
| | |PMB289 | ||
| | |CSH50 | ||
| | | | ||
| | |''pPM88-1'' | ||
| | | | ||
|- | |- | ||
| | |PMB290 | ||
| | |DJ480 | ||
| | | | ||
| | |''pPM88-1'' | ||
| | | | ||
|- | |- | ||
| | |PMB291 | ||
| | |CSH50 | ||
| | | | ||
| | |pPM89 | ||
| | | | ||
|- | |- | ||
| | |PMB292 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM89 | ||
| | | | ||
|- | |- | ||
| | |PMB293 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM80-5 | ||
| | | | ||
|- | |- | ||
| | |PMB294 | ||
| | |MC1061 | ||
| | |||
|pPM80-6 | |||
| | | | ||
| | |- | ||
|PMB295 | |||
|MC1061 | |||
| | | | ||
|pPM81 | |||
|clone 4 | |||
|- | |- | ||
| | |PMB296 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM91 | ||
| | | | ||
|- | |- | ||
| | |PMB297 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM92 | ||
| | | | ||
|- | |- | ||
| | |PMB298 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM93 | ||
| | | | ||
|- | |- | ||
| | |PMB299 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM94 | ||
| | | | ||
|- | |- | ||
| | |PMB300 | ||
| | |MC1061 | ||
| | | | ||
|pPM95 | |||
| | | | ||
|- | |- | ||
| | |PMB301 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM96 | ||
| | | | ||
|- | |- | ||
| | |PMB302 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM97 | ||
| | | | ||
|- | |- | ||
| | |PMB303 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM98 | ||
| | | | ||
|- | |- | ||
| | |PMB304 | ||
| | |PMB239 | ||
| | | | ||
|pPM82 | |||
| | | | ||
|- | |- | ||
| | |PMB305 | ||
| | |PMB239 | ||
| | | | ||
|pPM75 | |||
| | | | ||
|- | |- | ||
| | |PMB306 | ||
| | |PMB239 | ||
| | | | ||
| | |pPM83 | ||
| | | | ||
|- | |- | ||
| | |PMB307 | ||
| | |PMB239 | ||
| | | | ||
| | |pKG491 | ||
| | | | ||
|- | |- | ||
| | |PMB308 | ||
| | |PMB246 | ||
| | | | ||
| | |pPM82 | ||
| | | | ||
|- | |- | ||
| | |PMB309 | ||
| | |PMB246 | ||
| | | | ||
| | |pKG491 | ||
| | | | ||
|- | |- | ||
| | |PMB310 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM83 | ||
| | | | ||
|- | |- | ||
| | |PMB311 | ||
|DJ480 | |DJ480 | ||
| | | | ||
| | |pKGCm | ||
| | | | ||
|- | |- | ||
| | |PMB312 | ||
|PMB239 | |PMB239 | ||
| | | | ||
|pPM54/pKG491 | |pPM54/pKG491 | ||
|(made from PMB240) | |||
|- | |||
|PMB313 | |||
|PMB239 | |||
| | | | ||
|pPM82/pKG491 | |||
|(made from PMB304) | |||
|- | |- | ||
| | |PMB314 | ||
| | |PMB239 | ||
| | | | ||
|pPM82/pPM91 | |||
|(made from PMB304) | |||
|- | |- | ||
| | |PMB315 | ||
| | |PMB239 | ||
| | | | ||
| | |pPM82/pPM93 | ||
| | |(made from PMB304) | ||
|- | |- | ||
| | |PMB316 | ||
| | |PMB239 | ||
| | | | ||
| | |pPM82/pPM94 | ||
| | |(made from PMB304) | ||
|- | |- | ||
| | |PMB317 | ||
| | |PMB239 | ||
| | | | ||
| | |pPM82/pPM97 | ||
|(made from PMB304) | |||
|- | |||
|PMB318 | |||
|PMB239 | |||
| | | | ||
|pPM82/pPM98 | |||
|(made from PMB304) | |||
|- | |- | ||
| | |PMB319 | ||
| | |PMB239 | ||
| | | | ||
| | |pPM75/pKG491 | ||
| | |(made from PMB305) | ||
|- | |- | ||
| | |PMB320 | ||
| | |PMB239 | ||
| | | | ||
|pPM83 | |pPM83/pKG491 | ||
| | |(made from PMB306) | ||
|- | |- | ||
| | |PMB321 | ||
| | |PMB239 | ||
| | | | ||
| | |pKG491/pPM83 | ||
| | |(made from PMB307) | ||
|- | |- | ||
| | |PMB322 | ||
| | |PMB239 | ||
| | | | ||
| | |pKG491/pKGCm | ||
| | |(made from PMB307) | ||
|- | |- | ||
| | |PMB323 | ||
|DJ480 | |||
| | |||
|pKGCm/pKG491 | |||
|(made from PMB311) | |||
|- | |||
|PMB324 | |||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM99 | ||
| | | | ||
|- | |- | ||
| | |PMB325 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM100 | ||
| | | | ||
|- | |- | ||
| | |PMB326 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM101 | ||
| | | | ||
|- | |- | ||
| | |PMB327 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM102 | ||
| | | | ||
|- | |- | ||
| | |PMB328 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM103A | ||
| | | | ||
|- | |- | ||
| | |PMB329 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM103B | ||
| | | | ||
|- | |- | ||
| | |PMB330 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM106A | ||
| | | | ||
|- | |- | ||
| | |PMB331 | ||
|MC1061 | |||
| | |||
| | | | ||
| | |pPM107A | ||
| | | | ||
|- | |- | ||
| | |PMB332 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM110A | ||
| | | | ||
|- | |- | ||
| | |PMB333 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM110B | ||
| | | | ||
|- | |- | ||
| | |PMB334 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM111A | ||
| | | | ||
|- | |- | ||
| | |PMB335 | ||
|DJ480 | |DJ480 | ||
| | | | ||
|pKG491/ | |pKG491/pPM106A | ||
| | |made from PMB254 | ||
|- | |- | ||
| | |PMB336 | ||
|DJ480 | |DJ480 | ||
| | | | ||
|pKG491/ | |pKG491/pPM107A | ||
|made from PMB254 | |||
|- | |||
|PMB337 | |||
|DJ480 | |||
| | | | ||
|pKG491/pPM110A | |||
|made from PMB254 | |||
|- | |- | ||
| | |PMB338 | ||
| | |DJ480 | ||
| | | | ||
|pKG491/pPM110B | |||
|made from PMB254 | |||
|- | |- | ||
| | |PMB339 | ||
| | |DJ480 | ||
| | | | ||
|pKG491/pPM111A | |||
|made from PMB254 | |||
|- | |- | ||
| | |PMB340 | ||
| | |CSH50 | ||
| | | | ||
|pKG491/pPM106A | |||
|made from ST50 | |||
|- | |- | ||
| | |PMB341 | ||
| | |CSH50 | ||
| | | | ||
|pKG491/pPM107A | |||
|made from ST50 | |||
|- | |- | ||
| | |PMB342 | ||
|CSH50 | |CSH50 | ||
| | | | ||
| | |pKG491/pPM110A | ||
|made from ST50 | |||
| | |||
|- | |- | ||
| | |PMB343 | ||
|CSH50 | |CSH50 | ||
| | | | ||
| | |pKG491/pPM110B | ||
| | |made from ST50 | ||
|- | |- | ||
| | |PMB344 | ||
| | |CSH50 | ||
| | | | ||
|pKG491/pPM111A | |||
|made from ST50 | |||
|- | |- | ||
| | |PMB345 | ||
|CSH50 | |CSH50 | ||
| | | | ||
| | |pKG491/pPM54/pKGCm | ||
| | |made from PMB197 | ||
|- | |- | ||
| | |PMB346 | ||
|DJ480 | |DJ480 | ||
| | | | ||
| | |pKG491/pPM54/pKGCm | ||
| | |made from PMB202 | ||
|- | |- | ||
| | |PMB347 | ||
| | |PMB246 | ||
| | | | ||
|pKG491/pPM54/pKGCm | |||
|made from PMB256 | |||
|- | |- | ||
| | |} | ||
| | |||
====Box 6==== | |||
{| class="wikitable" style="text-align:left" | |||
!width="70"|Name | |||
!width="90"|Background | |||
!width="150"|Genotype | |||
!width="150"|Plasmid(s) | |||
!width="250"|Note | |||
|- | |||
|PMB348 | |||
|MC1061 | |||
| | | | ||
| | |pPM93T-1 | ||
| | | | ||
|- | |- | ||
| | |PMB349 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM93T-2 | ||
| | | | ||
|- | |- | ||
| | |PMB350 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM95T-2 | ||
| | | | ||
|- | |- | ||
| | |PMB351 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM95T-3 | ||
| | | | ||
|- | |- | ||
| | |PMB352 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM99T-1 | ||
| | | | ||
|- | |- | ||
| | |PMB353 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM99T-2 | ||
| | | | ||
|- | |- | ||
| | |PMB354 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM101T-1 | ||
| | | | ||
|- | |- | ||
| | |PMB355 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM101T-2 | ||
| | | | ||
|- | |- | ||
| | |PMB357 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM54/pPM90 | ||
|made from PMB193 | |||
|- | |||
|PMB358 | |||
|DJ480 | |||
| | | | ||
|pPM54/pPM95T-2 | |||
|made from PMB193 | |||
|- | |- | ||
| | |PMB359 | ||
| | |DJ480 | ||
| | | | ||
|pPM54/pPM95T-3 | |||
|made from PMB193 | |||
|- | |- | ||
| | |PMB360 | ||
| | |DJ480 | ||
| | | | ||
|pPM54/pPM101T-1 | |||
|made from PMB193 | |||
|- | |- | ||
| | |PMB361 | ||
| | |CSH50 DfimH | ||
| | | | ||
|pPM54/pPM81 | |||
|made from PMB247 | |||
|- | |- | ||
| | |PMB362 | ||
| | |CSH50 DfimH | ||
| | | | ||
| | |pPM54/pPM93-1 | ||
|made from PMB247 | |||
|- | |||
|PMB363 | |||
|CSH50 DfimH | |||
| | | | ||
|pPM54/pPM93T-2 | |||
|made from PMB247 | |||
|- | |- | ||
| | |PMB364 | ||
| | |CSH50 DfimH | ||
| | | | ||
| | |pPM54/pPM94 | ||
|made from PMB247 | |||
|- | |||
|PMB365 | |||
|CSH50 DfimH | |||
| | | | ||
|pPM54/pPM91-3 | |||
|made from PMB247 | |||
|- | |- | ||
| | |PMB366 | ||
| | |CSH50 DfimH | ||
| | | | ||
|pPM54/pPM99 | |||
|made from PMB247 | |||
|- | |- | ||
| | |PMB367 | ||
| | |CSH50 DfimH | ||
| | | | ||
|pPM54/pPM99T-1 | |||
|made from PMB247 | |||
|- | |- | ||
| | |PMB368 | ||
| | |CSH50 DfimH | ||
| | | | ||
| | |pPM54/pPM99T-2 | ||
|made from PMB247 | |||
|- | |||
|PMB369 | |||
|CSH50 DfimH | |||
| | | | ||
|pPM54/pPM100 | |||
|made from PMB247 | |||
|- | |- | ||
| | |PMB370 | ||
| | |CSH50 DfimH | ||
| | | | ||
| | |pKG491/pPM106A | ||
|made from PMB309 | |||
|- | |||
|PMB371 | |||
|CSH50 DfimH | |||
| | | | ||
|pKG491/pPM107A | |||
|made from PMB309 | |||
|- | |- | ||
| | |PMB372 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM112 | ||
| | | | ||
|- | |- | ||
| | |PMB373 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM113 | ||
| | | | ||
|- | |- | ||
| | |PMB374 | ||
| | |DJ480 | ||
| | | | ||
|pPM82 | |pPM82 | ||
| | | | ||
|- | |- | ||
| | |PMB375 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM106A | ||
| | | | ||
|- | |- | ||
| | |PMB376 | ||
|DJ480 | |DJ480 | ||
| | | | ||
| | |pPM107A | ||
| | | | ||
|- | |- | ||
| | |PMB377 | ||
| | |MC4100 | ||
| | | | ||
| | |pPM54 | ||
| | | | ||
|- | |- | ||
| | |PMB378 | ||
| | |MC4100 | ||
| | |||
|pPM82 | |||
| | | | ||
|- | |- | ||
| | |PMB379 | ||
| | |MC4100 | ||
| | | | ||
| | |pPM106A | ||
| | | | ||
|- | |- | ||
| | |PMB380 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM114 | ||
| | |clone 1 | ||
|- | |- | ||
| | |''PMB381'' | ||
| | |MC1061 | ||
| | | | ||
| | |pPM115 | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB382 | ||
| | |MC1061 | ||
| | |||
|pPM95T-7 | |||
| | | | ||
|- | |- | ||
| | |PMB383 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM95T-8 | ||
| | | | ||
|- | |- | ||
| | |PMB384 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM116 | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB385 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM117 | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB386 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM118 | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB387 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM119 | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB388 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM120 | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB389 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM121* | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB390 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM122 | ||
| | |clone 2 | ||
|- | |- | ||
| | |PMB391 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM123 | ||
| | |clone 3 | ||
|- | |- | ||
| | |PMB392 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM124 | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB393 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM125 | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB394 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM126 | ||
|clone 2 | |||
|- | |||
|PMB395 | |||
|MC1061 | |||
| | | | ||
|pPM127 | |||
|clone 3 | |||
|- | |- | ||
| | |PMB396 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM130 | ||
|clone 1 | |||
|- | |||
|PMB397 | |||
|MC1061 | |||
| | | | ||
|pPM131 | |||
|clone 1 | |||
|- | |- | ||
| | |PMB398 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM132 | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB399 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM133 | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB400 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM134 | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB401 | ||
|DJ480 | |DJ480 | ||
| | | | ||
| | |pPM54/pPM81 | ||
|made from | |made from PMB193 | ||
|- | |- | ||
| | |PMB402 | ||
|DJ480 | |DJ480 | ||
| | | | ||
| | |pPM54/pPM90 | ||
|made from | |made from PMB193 | ||
|- | |- | ||
| | |PMB403 | ||
|DJ480 | |DJ480 | ||
| | | | ||
| | |pPM54/pPM112 | ||
|made from | |made from PMB193 | ||
|- | |- | ||
| | |PMB404 | ||
|DJ480 | |DJ480 | ||
| | | | ||
| | |pPM54/pPM113 | ||
|made from | |made from PMB193 | ||
|- | |- | ||
| | |PMB405 | ||
|DJ480 | |DJ480 | ||
| | | | ||
| | |pPM54/pPM122 | ||
|made from | |made from PMB193 | ||
|- | |- | ||
| | |PMB406 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM54/pPM123 | ||
|made from | |made from PMB193 | ||
|- | |- | ||
| | |PMB407 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM54/pPM124 | ||
|made from | |made from PMB193 | ||
|- | |- | ||
| | |PMB408 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM54/pPM125 | ||
|made from | |made from PMB193 | ||
|- | |- | ||
| | |PMB409 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM54/pPM126 | ||
|made from | |made from PMB193 | ||
|- | |- | ||
| | |PMB410 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM54/pPM127 | ||
|made from | |made from PMB193 | ||
|- | |- | ||
| | |PMB411 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM54/pPM131 | ||
|made from | |made from PMB193 | ||
|- | |- | ||
| | |PMB412 | ||
|DJ480 | |DJ480 | ||
| | | | ||
| | |pPM54/pPM132 | ||
|made from | |made from PMB193 | ||
|- | |- | ||
| | |PMB413 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM54/pPM133 | ||
|made from | |made from PMB193 | ||
|- | |- | ||
| | |PMB414 | ||
|DJ480 | |||
| | |||
|pPM54/pPM134 | |||
|made from PMB193 | |||
|- | |- | ||
| | |PMB415 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM135 | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB416 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM136 | ||
| | |clone 2 | ||
|- | |- | ||
| | |PMB417 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM137 | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB418 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM138 | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB419 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM139 | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB420 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM140 | ||
|clone 9 | |||
|- | |||
|PMB421 | |||
|MC1061 | |||
| | | | ||
|pPM141 | |||
|clone 2 | |||
|- | |- | ||
| | |PMB422 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pKG491 | ||
| | | | ||
|- | |- | ||
| | |PMB423 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pKN1562 | ||
| | | | ||
|- | |- | ||
| | |PMB424 | ||
|DJ480 | |DJ480 | ||
| | | | ||
|pPM54/ | |pPM54/pACT7 | ||
|made from PMB193 | |made from PMB193 | ||
|- | |- | ||
| | |} | ||
====Box 7==== | |||
{| class="wikitable" style="text-align:left" | |||
!width="70"|Name | |||
!width="90"|Background | |||
!width="150"|Genotype | |||
!width="150"|Plasmid(s) | |||
!width="250"|Note | |||
|- | |||
|PMB425 | |||
|DJ480 | |DJ480 | ||
| | | | ||
|pPM54/ | |pPM54/pPM135 | ||
|made from PMB193 | |made from PMB193 | ||
|- | |- | ||
| | |PMB426 | ||
|DJ480 | |DJ480 | ||
| | | | ||
|pPM54/ | |pPM54/pPM136 | ||
|made from PMB193 | |made from PMB193 | ||
|- | |- | ||
| | |PMB427 | ||
|DJ480 | |DJ480 | ||
| | | | ||
|pPM54/ | |pPM54/pPM137 | ||
|made from PMB193 | |made from PMB193 | ||
|- | |- | ||
| | |PMB428 | ||
| | |DJ480 | ||
| | | | ||
|pPM54/ | |pPM54/pPM138 | ||
|made from | |made from PMB193 | ||
|- | |- | ||
| | |PMB429 | ||
| | |DJ480 | ||
| | | | ||
|pPM54/ | |pPM54/pPM139 | ||
|made from | |made from PMB193 | ||
|- | |- | ||
| | |PMB430 | ||
| | |DJ480 | ||
| | | | ||
|pPM54/ | |pPM54/pPM140 | ||
|made from | |made from PMB193 | ||
|- | |- | ||
| | |PMB431 | ||
| | |DJ480 | ||
| | | | ||
|pPM54/ | |pPM54/pPM141 | ||
|made from | |made from PMB193 | ||
|- | |- | ||
| | |PMB432 | ||
| | |MC1061 | ||
| | |||
|pPM91-3 | |||
| | | | ||
|- | |- | ||
| | |PMB433 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM106A/pPM90 | ||
|made from | |made from PMB375 | ||
|- | |- | ||
| | |PMB434 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM106A/pPM113 | ||
|made from | |made from PMB375 | ||
|- | |- | ||
| | |PMB435 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM106A/pPM135 | ||
|made from | |made from PMB375 | ||
|- | |- | ||
| | |PMB436 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM106A/pPM136 | ||
|made from | |made from PMB375 | ||
|- | |- | ||
| | |PMB437 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM106A/pPM137 | ||
|made from | |made from PMB375 | ||
|- | |- | ||
| | |PMB438 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM106A/pPM138 | ||
|made from | |made from PMB375 | ||
|- | |- | ||
| | |PMB439 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM106A/pPM139 | ||
|made from PMB375 | |||
|- | |||
|PMB440 | |||
|DJ480 | |||
| | | | ||
|pPM106A/pPM140 | |||
|made from PMB375 | |||
|- | |- | ||
| | |PMB441 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM106A/pPM141 | ||
|made from PMB375 | |||
|- | |||
|PMB442 | |||
|DJ480 | |||
| | | | ||
|pPM106A/pPM122 | |||
|made from PMB375 | |||
|- | |- | ||
| | |PMB443 | ||
|DJ480 | |DJ480 | ||
| | | | ||
| | |pPM106A/pPM123 | ||
| | |made from PMB375 | ||
|- | |- | ||
| | |PMB444 | ||
|DJ480 | |DJ480 | ||
| | | | ||
|pPM106A | |pPM106A/pACT7 | ||
| | |made from PMB375 | ||
|- | |- | ||
| | |PMB445 | ||
|DJ480 | |DJ480 | ||
| | | | ||
| | |pPM54/pACT7/pPM135 | ||
| | |made from PMB424 | ||
|- | |- | ||
| | |PMB446 | ||
| | |DJ480 | ||
| | | | ||
|pPM54 | |pPM54/pACT7/pPM136 | ||
|made from PMB424 | |||
|- | |||
|PMB447 | |||
|DJ480 | |||
| | | | ||
|pPM54/pACT7/pPM140 | |||
|made from PMB424 | |||
|- | |- | ||
| | |PMB448 | ||
| | |DJ480 | ||
|attTn7::PLtet-mCherry | |||
| | | | ||
| | |made using pPM47 for integration | ||
|- | |||
|PMB449 | |||
|MG1655 | |||
|attTn7::PLtet-mCherry | |||
| | | | ||
|made using pPM47 for integration | |||
|- | |- | ||
| | |PMB450 | ||
|MC4100 | |MC4100 | ||
|attTn7::PLtet-mCherry | |||
| | | | ||
| | |made using pPM47 for integration | ||
|- | |||
|PMB451 | |||
|DJ480 | |||
| | | | ||
|pPM106A/pPM137 | |||
|made from PMB375; remake of PMB437 | |||
|- | |- | ||
| | |PMB452 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM107A/pPM137 | ||
| | |made from PMB376 | ||
|- | |- | ||
| | |PMB453 | ||
| | |DJ480 | ||
| | |attTn7::PLtet-mCherry | ||
| | |pPM54 | ||
|clone | |made from PMB448 | ||
|- | |||
|PMB454 | |||
|DJ480 | |||
|attTn7::PLtet-mCherry | |||
|pPM106A | |||
|made from PMB448 | |||
|- | |||
|PMB455 | |||
|DJ480 | |||
| | |||
|pPM54/pPM142 (clone 7) | |||
|made from PMB193 | |||
|- | |- | ||
| | |PMB456 | ||
| | |DJ480 | ||
| | | | ||
| | |pUA66 | ||
| | | | ||
|- | |- | ||
| | |PMB457 | ||
| | |DJ480 | ||
| | | | ||
| | |pUA66/pPM136 | ||
| | | | ||
|- | |- | ||
| | |PMB458 | ||
| | |DJ480 | ||
| | | | ||
| | |pUA66/pPM137 | ||
| | | | ||
|- | |- | ||
| | |PMB459 | ||
| | |DJ480 | ||
| | |||
|pUA66/pPM139 | |||
| | | | ||
|- | |- | ||
| | |PMB460 | ||
| | |DJ480 | ||
| | |||
|pPM136 | |||
| | | | ||
|- | |- | ||
| | |PMB461 | ||
| | |DJ480 | ||
| | |||
|pPM137 | |||
| | | | ||
|- | |- | ||
| | |PMB462 | ||
| | |DJ480 | ||
| | | | ||
| | |pT7POL23 | ||
| | | | ||
|- | |- | ||
| | |PMB463 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM136/pT7POL23 | ||
| | |made from PMB460 | ||
|- | |- | ||
| | |PMB464 | ||
| | |DJ480 | ||
| | | | ||
| | |pPM136/pT7POL26 | ||
| | |made from PMB460 | ||
|- | |- | ||
| | |PMB465 | ||
| | |MC4100 | ||
| | | | ||
| | |pPM54/pPM136 | ||
| | |made from PMB377 | ||
|- | |- | ||
| | |PMB466 | ||
| | |MC4100 | ||
| | | | ||
| | |pPM54/pPM137 | ||
| | |made from PMB377 | ||
|- | |- | ||
| | |PMB467 | ||
| | |MC4100 | ||
| | | | ||
| | |pPM54/pPM139 | ||
| | |made from PMB377 | ||
|- | |- | ||
| | |PMB468 | ||
| | |MC4100 | ||
| | | | ||
| | |pPM54/pPM140 | ||
| | |made from PMB377 | ||
|- | |- | ||
| | |PMB469 | ||
| | |MC4100 | ||
| | | | ||
| | |pPM54/pPM141 | ||
| | |made from PMB377 | ||
|- | |- | ||
| | |PMB470 | ||
| | |MC4100 | ||
| | | | ||
| | |pPM54/pPM142 | ||
| | |made from PMB377 | ||
|- | |- | ||
| | |PMB471 | ||
| | |DJ480 | ||
| | |araB::T7RNAP_tetA | ||
| | |pPM54/pPM136 | ||
| | |made from PMB479 | ||
|- | |- | ||
| | |PMB472 | ||
| | |MC4100 | ||
| | |araB::T7RNAP_tetA | ||
| | |pPM54/pPM136 | ||
| | |made from PMB480 | ||
|- | |- | ||
| | |PMB473 | ||
|DJ480 | |DJ480 | ||
|araB::T7RNAP_tetA | |||
| | | | ||
| | |P1 from BL21-AI to DJ480 | ||
|- | |- | ||
| | |PMB474 | ||
| | |MC4100 | ||
|araB::T7RNAP_tetA | |||
| | | | ||
| | |P1 from BL21-AI to MC4100 | ||
|- | |- | ||
| | |PMB475 | ||
|DJ480 | |DJ480 | ||
| | |araB::T7RNAP_tetA | ||
|pPM54/ | |pPM54/pPM140 | ||
|made from | |made from PMB479 | ||
|- | |||
|PMB476 | |||
|MC4100 | |||
|araB::T7RNAP_tetA | |||
|pPM54/pPM140 | |||
|made from PMB480 | |||
|- | |- | ||
| | |PMB477 | ||
|DJ480 | |DJ480 | ||
| | |araB::T7RNAP_tetA | ||
| | |pPM136 | ||
|made from | |made from PMB473 | ||
|- | |- | ||
| | |PMB478 | ||
| | |MC4100 | ||
| | |araB::T7RNAP_tetA | ||
| | |pPM136 | ||
|made from | |made from PBM474 | ||
|- | |- | ||
| | |PMB479 | ||
|DJ480 | |DJ480 | ||
| | |araB::T7RNAP_tetA | ||
|pPM54 | |pPM54 | ||
|made from | |made from PMB473 | ||
|- | |- | ||
| | |PMB480 | ||
| | |MC4100 | ||
| | |araB::T7RNAP_tetA | ||
|pPM54/ | |pPM54 | ||
|made from | |made from PBM474 | ||
|- | |||
|PMB481 | |||
|MC4100 | |||
|araB::T7RNAP_tetA | |||
|pPM54/pPM136/pLysS | |||
|made from PBM472 | |||
|- | |- | ||
| | |PMB482 | ||
|DJ480 | |DJ480 | ||
|attP::tetR & lacIq | |||
| | | | ||
| | |DJ480 transduced with P1 from PMB14 | ||
|- | |- | ||
| | |PMB483 | ||
|DJ480 | |DJ480 | ||
|ΔacrA, attP::tetR & lacIq | |||
| | | | ||
| | |ST88 transduced with P1 from PMB14 | ||
|- | |- | ||
| | |PMB484 | ||
|DJ480 | |DJ480 | ||
| | |attP::tetR & lacIq | ||
|pPM54 | |pPM54 | ||
| | |trf of PMB482 | ||
|- | |- | ||
| | |PMB485 | ||
|DJ480 | |DJ480 | ||
| | |ΔacrA, attP::tetR & lacIq | ||
|pPM54 | |pPM54 | ||
| | |trf of PMB483 | ||
|- | |- | ||
| | |PMB486 | ||
|DJ480 | |DJ480 | ||
| | |attP::tetR & lacIq | ||
|pPM54/ | |pPM54/pPM93 | ||
| | |trf of PMB484 | ||
|- | |||
|PMB487 | |||
|DJ480 | |||
|attP::tetR & lacIq | |||
|pPM54/pPM95 | |||
|trf of PMB484 | |||
|- | |- | ||
| | |PMB488 | ||
|DJ480 | |DJ480 | ||
| | |ΔacrA, attP::tetR & lacIq | ||
|pPM54/ | |pPM54/pPM93 | ||
| | |trf of PMB485 | ||
|- | |- | ||
| | |PMB489 | ||
|DJ480 | |DJ480 | ||
| | |ΔacrA, attP::tetR & lacIq | ||
|pPM54/ | |pPM54/pPM95 | ||
| | |trf of PMB485 | ||
|- | |- | ||
| | |PMB490 | ||
| | |TOP10 | ||
| | | | ||
| | |pCP20 | ||
| | |from Dirk (Datsenko & Wanner) | ||
|- | |- | ||
| | |PMB491 | ||
| | |BW27783 | ||
|araB::T7RNAP_tetA | |||
| | | | ||
| | |P1 from PMB14 into BW27783 from Raul (nalR?) | ||
|- | |- | ||
| | |PMB492 | ||
|BW27783 | |||
|araB::T7RNAP_tetA | |||
|pPM54 | |||
|made from PMB491 | |||
|- | |||
|PMB493 | |||
|BW27783 | |||
|araB::T7RNAP_tetA | |||
|pPM54/pPM136 | |||
|made from PMB492 | |||
|- | |||
|PMB494 | |||
|BW27783 | |||
|araB::T7RNAP_tetA | |||
|pPM54/pPM140 | |||
|made from PMB492 | |||
|- | |||
|} | |||
====Box 8==== | |||
{| class="wikitable" style="text-align:left" | |||
!width="70"|Name | |||
!width="90"|Background | |||
!width="250"|Genotype | |||
!width="150"|Plasmid(s) | |||
!width="450"|Note | |||
|- | |||
|PMB495 | |||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM144 | ||
|clone | |clone 3 | ||
|- | |- | ||
| | |PMB496 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM145 | ||
|clone 1 | |clone 1 | ||
|- | |- | ||
| | |PMB497 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM146 | ||
|clone 1 | |clone 1 | ||
|- | |- | ||
| | |PMB498 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM147 | ||
|clone | |clone 2 | ||
|- | |- | ||
| | |PMB499 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM148 | ||
|clone | |clone 1 | ||
|- | |- | ||
| | |PMB500 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM149 | ||
|clone 1 | |||
|- | |||
|PMB501 | |||
|MC1061 | |||
| | | | ||
|pPM150 | |||
|clone 1 | |||
|- | |- | ||
| | |PMB502 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM151 | ||
|clone 1 | |||
|- | |||
|PMB503 | |||
|MC1061 | |||
| | | | ||
|pPM152 | |||
|clone 1 | |||
|- | |- | ||
| | |PMB504 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM153 | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB505 | ||
|MC1061 | |||
| | |||
|pPM154 | |||
|clone 3 | |||
|- | |- | ||
| | |PMB506 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM155 | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB507 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM156 | ||
| | |clone 1 | ||
|- | |- | ||
| | |''PMB508'' | ||
| | |MC1061 | ||
| | | | ||
| | |pPM157 | ||
| | |''forthcoming'' | ||
|- | |- | ||
| | |PMB509 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM158 | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB510 | ||
|DJ480 | |PMB479 | ||
|DJ480 araB::T7RNAP_tetA | |||
|pPM54/pPM144 | |||
| | | | ||
|- | |- | ||
| | |PMB511 | ||
|DJ480 | |PMB479 | ||
|DJ480 araB::T7RNAP_tetA | |||
|pPM54/pPM148 | |||
| | | | ||
|- | |- | ||
| | |PMB512 | ||
|DJ480 | |PMB479 | ||
|DJ480 araB::T7RNAP_tetA | |||
|pPM54/pPM152 | |||
| | | | ||
|- | |- | ||
| | |PMB513 | ||
| | |PMB479 | ||
|DJ480 araB::T7RNAP_tetA | |||
|pPM54/pPM153 | |||
| | | | ||
| | |- | ||
|PMB514 | |||
|PMB479 | |||
|DJ480 araB::T7RNAP_tetA | |||
|pPM54/pPM156 | |||
| | | | ||
|- | |- | ||
| | |PMB515 | ||
|DJ480 | |PMB479 | ||
|DJ480 araB::T7RNAP_tetA | |||
|pPM54/pPM158 | |||
| | | | ||
|- | |- | ||
| | |PMB516 | ||
| | |PMB492 | ||
|BW27783 araB::T7RNAP_tetA | |||
|pPM54/pPM144 | |||
| | | | ||
|- | |- | ||
| | |PMB517 | ||
| | |PMB492 | ||
|BW27783 araB::T7RNAP_tetA | |||
|pPM54/pPM148 | |||
| | | | ||
|- | |- | ||
| | |PMB518 | ||
| | |PMB492 | ||
|BW27783 araB::T7RNAP_tetA | |||
|pPM54/pPM152 | |||
| | | | ||
|- | |- | ||
| | |PMB519 | ||
| | |PMB492 | ||
|BW27783 araB::T7RNAP_tetA | |||
|pPM54/pPM153 | |||
| | | | ||
|- | |- | ||
| | |PMB520 | ||
| | |PMB492 | ||
|BW27783 araB::T7RNAP_tetA | |||
|pPM54/pPM156 | |||
| | | | ||
|- | |- | ||
| | |PMB521 | ||
| | |PMB492 | ||
|BW27783 araB::T7RNAP_tetA | |||
|pPM54/pPM158 | |||
| | | | ||
|- | |- | ||
| | |PMB522 | ||
|DJ480 | |PMB479 | ||
| | |DJ480 araB::T7RNAP_tetA | ||
| | |pPM54/pPM156/pM152 | ||
|made from | |made from PMB514; selected on LBgluc(0.2%) / carbenicillin(20ug/ml) / Cm(3ug/ml) / Kn(35ug/ml) | ||
|- | |||
|PMB523 | |||
|PMB492 | |||
|BW27783 araB::T7RNAP_tetA | |||
|pPM54/pPM156/pM152 | |||
|made from PMB520; selected on LBgluc(0.2%) / carbenicillin(20ug/ml) / Cm(3ug/ml) / Kn(35ug/ml) | |||
|- | |- | ||
| | |PMB524 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM160 | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB525 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM161 | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB526 | ||
|DJ480 | |PMB479 | ||
|DJ480 araB::T7RNAP_tetA | |||
|pPM54/pPM160 | |||
| | | | ||
|- | |- | ||
| | |PMB527 | ||
|DJ480 | |PMB479 | ||
|DJ480 araB::T7RNAP_tetA | |||
|pPM54/pPM161 | |||
| | | | ||
|- | |- | ||
| | |PMB528 | ||
| | |PMB492 | ||
|BW27783 araB::T7RNAP_tetA | |||
|pPM54/pPM160 | |||
| | | | ||
|- | |- | ||
| | |PMB529 | ||
| | |PMB492 | ||
|BW27783 araB::T7RNAP_tetA | |||
|pPM54/pPM161 | |||
| | | | ||
|- | |- | ||
| | |PMB530 | ||
|DJ480 | |PMB479 | ||
|DJ480 araB::T7RNAP_tetA | |||
|pPM54/pPM160/pPM153 | |||
| | | | ||
|- | |- | ||
| | |PMB531 | ||
|DJ480 | |PMB479 | ||
| | |DJ480 araB::T7RNAP_tetA | ||
|pPM54/pPM161/pPM152 | |||
|pSC101_Plac-copA_Kn / R1(-)_Pt7-gfpmut3_Cm / R1(-)_Pt7-mCherry_Ap | |||
|- | |||
|PMB532 | |||
|PMB492 | |||
|BW27783 araB::T7RNAP_tetA | |||
|pPM54/pPM160/pPM153 | |||
| | | | ||
|- | |- | ||
| | |PMB533 | ||
| | |PMB492 | ||
| | |BW27783 araB::T7RNAP_tetA | ||
|pPM54/pPM161/pPM152 | |||
| | | | ||
|- | |- | ||
| | |PMB535 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM145 A5 | ||
|clone A<sup>+</sup>5; from original transformation, restruck on Ap20; glycerol stock cultured in LB/Ap25 | |||
|- | |- | ||
| | |PMB536 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM145 A6 | ||
| | |clone A<sup>+</sup>6; from original transformation, restruck on Ap20; glycerol stock cultured in LB/Ap25 | ||
|- | |- | ||
| | |PMB537 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM162 | ||
| | |clone-1; selected on Ap10, restruck on Ap20; glycerol stock cultured in LB/Ap25 | ||
|- | |- | ||
| | |PMB538 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM163 | ||
| | |clone-1; selected on Ap10, restruck on Ap20; glycerol stock cultured in LB/Ap25 | ||
|- | |- | ||
| | |PMB539 | ||
| | |PMB479 | ||
| | |DJ480 araB::T7RNAP_tetA | ||
| | |pPM54/pPM160-1 | ||
| | |redo of PMB526. Selected on Kn35/Cm8, restruck on same; glycerol stock cultured in LB/Cm5 (forgot Kn) | ||
|- | |- | ||
| | |PMB540 | ||
|DJ480 | |PMB479 | ||
| | |DJ480 araB::T7RNAP_tetA | ||
| | |pPM54/pPM160-2 | ||
|Selected on Kn35/Cm8, restruck on same; glycerol stock cultured in LB/Cm5 (forgot Kn) | |||
|- | |- | ||
| | |PMB541 | ||
| | |PMB479 | ||
| | |DJ480 araB::T7RNAP_tetA | ||
| | |pPM54/pPM145 (A5) | ||
| | |selected on Ap20, restruck on Ap20 with Kn5 overlay; glycerol stock cultured in LBglucose/Kn35/Cb25 | ||
|- | |- | ||
| | |PMB542 | ||
| | |PMB479 | ||
| | |DJ480 araB::T7RNAP_tetA | ||
| | |pPM54/pPM162-1 | ||
| | |selected on Ap20, restruck on Ap20 with Kn5 overlay; glycerol stock cultured in LBglucose/Kn35/Cb25 | ||
|- | |- | ||
| | |PMB543 | ||
|DJ480 | |PMB479 | ||
| | |DJ480 araB::T7RNAP_tetA | ||
| | |pPM163-1(1) | ||
|clone-1, selected on Ap20, restruck on Ap20 with Kn5 overlay; glycerol stock cultured in LBglucose/Kn35/Cb25 | |||
|- | |- | ||
| | |PMB544 | ||
| | |PMB479 | ||
| | |DJ480 araB::T7RNAP_tetA | ||
| | |pPM54/pPM163-1(2) | ||
| | |clone-2(small), selected on Ap20, restruck on Ap20 with Kn5 overlay; glycerol stock cultured in LBglucose/Kn35/Cb25 | ||
|- | |- | ||
| | |PMB545 | ||
| | |PMB479 | ||
| | |DJ480 araB::T7RNAP_tetA | ||
| | |pPM54/pPM145 A5-2 | ||
| | |selected on Ap20, stored in fridge, restruck on Ap20; glycerol stock cultured in LBglucose/Kn35/Cb20 | ||
|- | |- | ||
| | |PMB546 | ||
| | |PMB479 | ||
| | |DJ480 araB::T7RNAP_tetA | ||
| | |pPM54/pPM163-1a | ||
| | |selected on Ap20, stored in fridge, restruck on Ap20; glycerol stock cultured in LBglucose/Kn35/Cb20; not the same as PMB543=479/163-1(1) | ||
|- | |- | ||
| | |PMB547 | ||
| | |PMB479 | ||
| | |DJ480 araB::T7RNAP_tetA | ||
| | |pPM54/pPM163-1b | ||
| | |selected on Ap20, stored in fridge, restruck on Ap20; glycerol stock cultured in LBglucose/Kn35/Cb20 | ||
|- | |- | ||
| | |PMB548 | ||
|DJ480 | |PMB479 | ||
| | |DJ480 araB::T7RNAP_tetA | ||
| | |pPM54/pPM163-1c | ||
| | |selected on Ap20, stored in fridge, restruck on Ap20; glycerol stock cultured in LBglucose/Kn35/Cb20 | ||
|- | |||
|PMB549 | |||
|PMB479 | |||
|DJ480 araB::T7RNAP_tetA | |||
|pPM54/pPM145 (A5) | |||
|145A5 plasmid prep from PMB535 grown in Cb20; trfs selected on Ap10; glycerol stock cultured in LBglucose/Cb10 (forgot Kn) | |||
|- | |- | ||
| | |''PMB550'' | ||
| | |MC1061 | ||
| | | | ||
| | |pPM164 (2) - ''no good'' | ||
| | |clone 2; trfs selected on Ap50; restruck on Ap12.5; glycerol stock cultured in LB/Ap50 | ||
|- | |- | ||
| | |''PMB551'' | ||
| | |MC1061 | ||
| | | | ||
| | |pPM164 (3) - ''no good'' | ||
| | |clone 3; trfs selected on Ap50; restruck on Ap12.5; glycerol stock cultured in LB/Ap50 | ||
|- | |- | ||
| | |PMB552 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM165 (4) | ||
| | |clone 4; trfs selected on Ap50; restruck on Ap12.5; glycerol stock cultured in LB/Ap50 | ||
|- | |- | ||
| | |''PMB553'' | ||
| | |MC1061 | ||
| | | | ||
| | |pPM165 (5) - ''no good'' | ||
| | |clone 5; trfs selected on Ap50; restruck on Ap12.5; glycerol stock cultured in LB/Ap50 | ||
|- | |- | ||
| | |PMB554 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM166 | ||
| | |clone 25-6; trfs selected on LB/Ap25; glycerol stock cultured in LB/Cb10 | ||
|- | |- | ||
| | |PMB555 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM167 | ||
| | |clone 80-6; trfs selected on LB/Ap80; glycerol stock cultured in LB/Cb10 | ||
|- | |- | ||
| | |PMB556 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM168 | ||
| | |clone 80-7; trfs selected on LB/Ap80; glycerol stock cultured in LB/Cb10 | ||
|- | |- | ||
| | |PMB557 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM169 | ||
| | |clone T1-1; trfs selected on LB/Ap12; restruck on LBglucose/Ap20; glycerol stock cultured in LB/Ap20 | ||
|- | |- | ||
| | |PMB558 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM170 | ||
| | |clone T2-1; trfs selected on LB/Ap12; restruck on LBglucose/Ap20; glycerol stock cultured in LB/Ap20 | ||
|- | |- | ||
| | |PMB559 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM171 | ||
|clone T3-1; trfs selected on LB/Ap12; restruck on LBglucose/Ap20; glycerol stock cultured in LB/Ap20 | |||
|- | |- | ||
| | |PMB560 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM172 | ||
|clone E1-1; trfs selected on LB/Ap12; restruck on LBglucose/Ap20; glycerol stock cultured in LB/Ap20 | |||
|- | |- | ||
| | |PMB561 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM173 | ||
| | |clone E2-1; trfs selected on LB/Ap12; restruck on LBglucose/Ap20; glycerol stock cultured in LB/Ap20 | ||
|- | |- | ||
| | |PMB562 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM174 | ||
| | |clone E3-1; trfs selected on LB/Ap12; restruck on LBglucose/Ap20; glycerol stock cultured in LB/Ap20 | ||
|- | |- | ||
| | |PMB563 | ||
| | |PMB479 | ||
|araB::T7RNAP_tetA | |DJ480 araB::T7RNAP_tetA | ||
| | |pPM54/pPM165 | ||
| | |trfs selected and restruck on LBglucose/Kn35/Ap10; glycerol stock cultured in LBglucose/Ap20 | ||
|- | |- | ||
| | |PMB564 | ||
| | |PMB479 | ||
|araB::T7RNAP_tetA | |DJ480 araB::T7RNAP_tetA | ||
| | |pPM54/pPM169 | ||
| | |trfs selected and restruck on LBglucose/Kn35/Ap10; glycerol stock cultured in LBglucose/Ap20 | ||
|- | |- | ||
|PMB565 | |||
|PMB479 | |PMB479 | ||
|DJ480 | |DJ480 araB::T7RNAP_tetA | ||
|pPM54/pPM170 | |||
|pPM54 | |trfs selected and restruck on LBglucose/Kn35/Ap10; glycerol stock cultured in LBglucose/Ap20 | ||
| | |||
|- | |- | ||
| | |PMB566 | ||
| | |PMB479 | ||
|araB::T7RNAP_tetA | |DJ480 araB::T7RNAP_tetA | ||
|pPM54 | |pPM54/pPM171 | ||
| | |trfs selected and restruck on LBglucose/Kn35/Ap10; glycerol stock cultured in LBglucose/Ap20 | ||
|- | |- | ||
| | |PMB567 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM175 | ||
|trfs selected on LB/Ap12; glycerol stock cultured in LB/Ap25 | |||
|- | |- | ||
| | |PMB568 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM176 | ||
|trfs selected on LB/Ap12; glycerol stock cultured in LB/Ap25 | |||
|- | |- | ||
| | |PMB569 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM177 | ||
|trfs selected on LB/Ap12; glycerol stock cultured in LB/Ap25 | |||
|- | |- | ||
| | |PMB570 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM178 | ||
| | |trfs selected on LB/Ap12; glycerol stock cultured in LB/Ap25 | ||
|- | |- | ||
| | |PMB571 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM179 | ||
| | |trfs selected on LB/Ap25; restruck on LB/Ap20; glycerol stock cultured in LB/Ap25 | ||
|- | |- | ||
| | |''PMB572'' | ||
| | |PMB479 | ||
| | |DJ480 araB::T7RNAP_tetA | ||
|pPM54/ | |pPM54/pPM179 | ||
| | |selected on LBgluc(0.2%)/Kn35/Ap20, grown at 30°C; glycerol stock cultured in LB/Cb25 | ||
|- | |- | ||
| | |} | ||
| | |||
| | ====Box 9==== | ||
| | |||
| | {| class="wikitable" style="text-align:left" | ||
!width="70"|Name | |||
!width="90"|Background | |||
!width="250"|Genotype | |||
!width="150"|Plasmid(s) | |||
!width="450"|Note | |||
|- | |- | ||
| | |PMB573 | ||
| | |MG1655 | ||
| | |DJ480 araB::T7RNAP_tetA | ||
| | |pKGCm | ||
| | |made from PMB473; selected on LBgluc(0.2%)/Cm15 | ||
|- | |- | ||
| | |PMB574 | ||
| | |MG1655 | ||
| | |DJ480 araB::T7RNAP_tetA | ||
| | |pPM136/pKGCm | ||
| | |made from PMB477; selected on LBgluc(0.2%)/Ap40/Cm15 | ||
|- | |- | ||
| | |PMB575 | ||
| | |MG1655 | ||
| | |DJ480 araB::T7RNAP_tetA | ||
| | |pPM54/pKGCm | ||
|from | |made from PMB479; selected on LBgluc(0.2%)/Kn35/Cm8 | ||
|- | |||
|PMB576 | |||
|MG1655 | |||
|DJ480 araB::T7RNAP_tetA | |||
|pPM54/pPM136/pKGCm | |||
|made from PMB471; selected on LBgluc(0.2%)/Kn35/Cb32/Cm4 | |||
|- | |||
|PMB577 | |||
|MG1655 | |||
|DJ480 araB::T7RNAP_tetA | |||
|pPM54/pPM170/pKGCm | |||
|made from PMB565; selected on LBgluc(0.2%)/Kn35/Cb32/Cm4 | |||
|- | |- | ||
| | |PMB578 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM180 | ||
|clone 1 | |||
|- | |- | ||
| | |PMB579 | ||
| | |MC1061 | ||
| | | | ||
| | |pPM181 | ||
| | |clone 1 | ||
|- | |- | ||
| | |PMB580 | ||
| | |MC1061 | ||
| | | | ||
| | |pAM238 | ||
| | |SpcR | ||
|- | |- | ||
| | |PMB581 | ||
| | |MC1061 | ||
| | | | ||
| | |pNG162 | ||
| | |SpcR | ||
|- | |- | ||
| | |PMB582 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pNG162a | ||
| | |SpcR | ||
|- | |- | ||
| | |PMB583 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pKG339 | ||
| | |TetR | ||
|- | |- | ||
| | |PMB584 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM182 | ||
|clone 1 | |SpcR; clone 1-1 | ||
|- | |- | ||
| | |PMB585 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM183 | ||
|clone 2 | |SpcR; clone 2-1 | ||
|- | |- | ||
| | |PMB586 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM184 | ||
|clone 1 | |SpcR; clone 5-1 | ||
|- | |- | ||
| | |PMB587 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM185 | ||
|clone 1 | |SpcR; clone 6-1 | ||
|- | |- | ||
| | |PMB588 | ||
| | |PMB473 | ||
| | | | ||
| | |pPM182 | ||
|clone 1 | |SpcR; clone 1-1 | ||
|- | |- | ||
| | |PMB589 | ||
| | |PMB473 | ||
| | | | ||
| | |pPM183 | ||
|clone 1 | |SpcR; clone 2-1 | ||
|- | |- | ||
| | |PMB590 | ||
| | |PMB473 | ||
| | | | ||
| | |pKGCm/pPM184 | ||
|clone 1 | |SpcR; clone 5-1 | ||
|- | |- | ||
| | |PMB591 | ||
| | |PMB473 | ||
| | | | ||
| | |pKGCm/pPM185 | ||
|clone 1 | |SpcR; clone 6-1 | ||
|- | |- | ||
| | |PMB592 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM186 | ||
|clone | |SpcR; clone A-1 | ||
|- | |- | ||
| | |PMB593 | ||
|MC1061 | |MC1061 | ||
| | | | ||
| | |pPM187 | ||
|clone 1 | |SpcR; clone B-1 | ||
|- | |- | ||
| | |PMB594 | ||
| | |PMB473 | ||
| | |||
|pPM186 | |||
| | | | ||
|- | |- | ||
| | |PMB595 | ||
| | |PMB473 | ||
| | |||
|pPM187 | |||
| | | | ||
|- | |- | ||
| | |PMB596 | ||
| | |PMB473 | ||
| | | | ||
| | |pPM136/pPM182 | ||
| | |made from PMB477 | ||
|- | |- | ||
| | |PMB597 | ||
| | |PMB473 | ||
| | | | ||
|pPM136/pPM183 | |||
|made from PMB477 | |||
|- | |- | ||
| | |PMB598 | ||
| | |PMB473 | ||
| | | | ||
|pPM136/pPM186 | |||
|made from PMB477 | |||
|- | |- | ||
| | |PMB599 | ||
| | |PMB473 | ||
| | | | ||
|pPM136/pPM187 | |||
|made from PMB477 | |||
|- | |- | ||
| | |PMB600 | ||
| | |PMB473 | ||
| | | | ||
|pKGCm/pPM186 | |||
|made from PMB573 | |||
|- | |- | ||
| | |PMB601 | ||
| | |PMB473 | ||
| | | | ||
|pKGCm/pPM187 | |||
|made from PMB573 | |||
|- | |- | ||
| | |PMB602 | ||
| | |PMB473 | ||
| | | | ||
|pKGCm/pPM136/pPM184 | |||
|made from PMB574 | |||
|- | |- | ||
| | |PMB603 | ||
| | |PMB473 | ||
| | | | ||
|pKGCm/pPM136/pPM185 | |||
|made from PMB574 | |||
|- | |- | ||
| | |PMB604 | ||
| | |PMB473 | ||
| | | | ||
|pKGCm/pPM136/pPM186 | |||
|made from PMB574 | |||
|- | |- | ||
| | |PMB605 | ||
| | |PMB473 | ||
| | | | ||
|pKGCm/pPM136/pPM187 | |||
|made from PMB574 | |||
|- | |||
|} | |||
===Nate's Strains=== | |||
{| class="wikitable" style="text-align:left" | |||
!width="70"|Name | |||
!width="90"|Background | |||
!width="150"|Genotype | |||
!width="150"|Plasmid(s) | |||
!width="250"|Note | |||
!width="70"| Notebook Page | |||
|- | |- | ||
| | |NDL-1 | ||
| | |One Shot 2T1R (Invitrogen) | ||
| | | | ||
| | | | ||
|ccdB survival cells. Recovered from pGRG37 by curing. | |||
|L.2.14 | |||
|- | |- | ||
| | |NDL-2 | ||
| | |MC4100 | ||
| | |Lac- | ||
| | |pNDL-17, Alon 2-A-6 | ||
| | |||
|e.9.2 | |||
| | | | ||
|- | |- | ||
| | |NDL-3 | ||
| | |MC4100 | ||
| | |Lac- | ||
| | |pNDL-17, Alon 11-A-6 | ||
| | | | ||
|E.9.2 | |||
|- | |- | ||
| | |NDL-4 | ||
| | |MC4100 | ||
| | |Lac- | ||
| | |pNDL-17, Alon 13-B-9 | ||
| | | | ||
|E.9.2 | |||
|- | |- | ||
| | |NDL-5 | ||
| | |MC4100 | ||
| | |Lac- | ||
| | |pNDL-17, Alon 18-E-2 | ||
| | |E.9.2 | ||
|- | |- | ||
| | |NDL-6 | ||
| | |MG1655 | ||
| | | | ||
| | |pNDL-18 | ||
| | |Promoterless GFP, +CFP, -term | ||
|L.6.14 | |||
|- | |- | ||
| | |NDL-7 | ||
| | |MG1655 | ||
| | | | ||
| | |pNDL-19 | ||
| | |Promoterless GFP,-CFP, +term | ||
|L.6.14 | |||
|- | |- | ||
| | |NDL-8 | ||
| | |MG1655 | ||
| | | | ||
|pNDL-20 | |||
|promoterless GFP,+term,+CFP | |||
|L.6.14 | |||
|- | |- | ||
| | |NDL-9 | ||
| | |MG1655 | ||
| | |attTn7::(no promoter)-GFPmut2 | ||
| | | | ||
|Generated by curing NDL-6 of pNDL-18 | |||
|L.6.28 | |||
|- | |- | ||
| | |NDL-10 | ||
| | |MG1655 | ||
| | |attTN7::B0015-(no promoter)-GFPmut2 | ||
| | | | ||
|Generated by curing NDL-7 of pNDL-19 | |||
|L.6.28 | |||
|- | |- | ||
| | |NDL-11 | ||
| | |MG1655 | ||
| | |attTn7::B0015-(no promoter)-GFPmut2 | ||
| | | | ||
|Generated by curing NDL-8 of pNDL-20 | |||
|L.6.28 | |||
|- | |- | ||
| | |NDL-12 | ||
| | |MG1655 | ||
| | | | ||
|pNDL-21 | |||
|Bright ColE1 RNA1-tdCherry on R1 | |||
|L.7.19 | |||
|- | |- | ||
| | |NDL-13 | ||
| | |MG1655 | ||
| | | | ||
| | |pNDL-22 | ||
| | |Bright ColE1 RNA1-tdCherry on R1 | ||
|L.7.19 | |||
|- | |- | ||
| | |NDL-14 | ||
| | |MG1655 | ||
| | | | ||
|pNDL-23 | |||
|very bright ColE1 RNA1-tdCherry on R1 | |||
|L.7.19 | |||
|- | |- | ||
| | |NDL-15 | ||
| | |MG1655 | ||
| | | | ||
|pNDL-24 | |||
|very bright ColE1 RNA1-tdCherry on R1 | |||
|L.7.19 | |||
|- | |- | ||
| | |NDL-16 | ||
| | |MG1655 | ||
| | | | ||
| | |pNDL-25 | ||
| | |Intermediate bright ColE1 RNA1-tdCherry on R1 | ||
|L.7.19 | |||
|- | |- | ||
| | |NDL-17 | ||
| | |MG1655 | ||
| | | | ||
| | |pNDL-26 | ||
| | |Intermediate bright ColE1 RNA1-tdCherry on R1 | ||
|L.7.19 | |||
|- | |- | ||
| | |NDL-18 | ||
| | |MG1655 | ||
| | | | ||
| | |pNDL-31 | ||
| | |Bright ColE1 RNA1-tdCherry in pNDL6 integration vector | ||
|L.11.11 | |||
|- | |- | ||
| | |NDL-19 | ||
| | |MG1655 | ||
| | | | ||
| | |pNDL-32 | ||
| | |Very bright ColE1 RNA1-tdCherry in pNDL-6 integration vecotr | ||
|L.11.11 | |||
|- | |- | ||
| | |NDL-20 | ||
| | |MG1655 | ||
| | | | ||
| | |pNDL-33 | ||
| | |Very bright ColE1 RNA1-tdCherry in pNDL-6 integration vector | ||
|L.11.11 | |||
|- | |- | ||
| | |NDL-21 | ||
| | |MG1655 | ||
| | |attTn7::pRNA1(bright)-tdCherry | ||
| | |none | ||
| | |bright ColE1 RNA1-tdCherry integrated at Tn7 (cured of pNDL-31) | ||
|L.11.19 | |||
|- | |- | ||
| | |NDL-22 | ||
| | |MG1655 | ||
| | |attTn7::pRNA1(very bright)-tdCherry | ||
| | |none | ||
| | |Very bright ColE1 RNA1-tdCherry integrated at Tn7 (cured of pNDL-32) | ||
|L.11.19 | |||
|- | |- | ||
| | |NDL-23 | ||
| | |MG1655 | ||
| | |attTn7::pRNA1(very bright)-tdCherry | ||
| | |none | ||
| | |Very bright ColE1 RNA1-tdCherry integrated at Tn7 (cured of pNDL-33) | ||
|L.11.19 | |||
|- | |- | ||
| | |NDL-24 | ||
| | |MG1655 | ||
| | | | ||
| | |pNDL-41 | ||
| | |Contains plasmid with FRT-flanked KanR gene. For Integrations. | ||
| | |||
|- | |- | ||
| | |NDL-25 | ||
| | |DH5-Alpha | ||
| | |'WT' | ||
| | |none | ||
| | |Stock for cloning strain-- plain DH5 alpha cells. | ||
| | |||
|- | |- | ||
| | |NDL-26 | ||
| | |BL21-AI (Invitrogen) | ||
| | | | ||
| | |pNDL-44 | ||
| | |Contains plasmid with T7 His-bt-B-gal expression construct | ||
|39.25 | |||
|- | |||
|NDL-27 | |||
|MG1655 | |||
| | |||
|pNDL-46 | |||
|Strain for integration of 1-E-3 Alon Clone | |||
|L.17.1 | |||
|- | |- | ||
| | |NLD-28 | ||
| | |MG1655 | ||
| | | | ||
| | |pNDL-47 | ||
| | |Strain for Integration of 1-E-5 Alon Clone | ||
|L.17.1 | |||
|- | |- | ||
| | |NDL-29 | ||
| | |MG1655 | ||
| | | | ||
| | |pNDL-48 | ||
| | |Strain for Integration of 2-A-6 Alon Clone | ||
|L.17.1 | |||
|- | |- | ||
| | |NDL-30 | ||
| | |MG1655 | ||
| | | | ||
| | |pNDL-49 | ||
| | |Strain for Integration of 2-C-11 Alon Clone | ||
|L.17.1 | |||
|- | |- | ||
| | |NDL-31 | ||
| | |MG1655 | ||
| | | | ||
| | |pNDL-50 | ||
| | |Strain for Integration of 2-F-4 Alon Clone | ||
|L.17.1 | |||
|- | |- | ||
| | |NDL-32 | ||
| | |MG1655 | ||
| | | | ||
| | |none | ||
| | |NDL-27 cured of pNDL-46. Alon clone integrant. | ||
|L.17.2 | |||
|- | |- | ||
| | |NDL-33 | ||
| | |MG1655 | ||
| | | | ||
| | |none | ||
| | |NDL-28 cured of pNDL-47. Alon clone integrant. | ||
|L.17.2 | |||
|- | |- | ||
| | |NDL-34 | ||
| | |MG1655 | ||
| | | | ||
| | |none | ||
|clone | |NDL-29 cured of pNDL-48. Alon clone integrant. | ||
|L.17.2 | |||
|- | |- | ||
| | |NDL-35 | ||
| | |MG1655 | ||
| | | | ||
| | |none | ||
| | |NDL-30 cured of pNDL-49. Alon clone integrant. | ||
|L.17.2 | |||
|- | |- | ||
| | |NDL-36 | ||
| | |MG1655 | ||
| | | | ||
| | |none | ||
|clone | |NDL-31 cured of pNDL-50. Alon clone integrant. | ||
|L.17.2 | |||
|- | |||
|NDL-37 | |||
|BL-21 | |||
|lacY1 mutation (Novagen says its a LacZY mutation) | |||
|none | |||
|LacZ- strain for protein expression. Used in purificaton of btB-gal | |||
|42.1 | |||
|- | |- | ||
| | |NDL-38 | ||
| | |NDL-37 (Novagen Tuner DE3) | ||
| | |lacY1 mutation (Novagen says its a LacZY mutation) | ||
| | |pNDL-44 | ||
| | |For purification of btB-gal | ||
|42.1 | |||
|- | |- | ||
| | |NLD-39 | ||
| | |MG1655 | ||
|Wanner strain for integration into chromosome | |||
|pKD46 (pNDL-???) | |||
| | | | ||
| | | | ||
|- | |- | ||
| | |NDL-40 | ||
| | |MG1655 | ||
| | |pNDL-52 pRNA1-mCherry integrated downstream of attTn7 | ||
| | |cured of pKD46 | ||
| | |Constitutive mCherry strain for library, prior to P1 transduction | ||
|L.18.6 | |||
|- | |- | ||
| | |NDL-41 | ||
| | |BL-21 AI | ||
| | |Contains Ara-Inducible T7 Polymerase | ||
| | |pNDL-96 | ||
| | |For expression of GST-cotA | ||
|43.9 | |||
|- | |- | ||
| | |NDL-42 | ||
| | |Rosetta2 DE3 (Novagen) | ||
| | |BL21 derived Strain from Novagen with codon+ plasmid | ||
| | |pRARE2 | ||
| | |For recombinant protein expression with rare codons | ||
|L.47.1 | |||
|- | |- | ||
| | |NDL-43 | ||
| | |MG1655 (CGSC 7740) | ||
| | |Fully sequenced MG1655 Strain | ||
| | |none | ||
| | |Host strain for library construction | ||
|L.18.15 | |||
|- | |- | ||
| | |NDL-44 | ||
| | |Tuner BL21 (NDL-37) | ||
| | |BL21 (DE3) lacZY mutant | ||
| | |pRARE2 (camR) | ||
| | |Codon+ Tuner Strain | ||
|ex.48.2 | |||
|- | |- | ||
| | |NDL-45 | ||
| | |MG1655 | ||
| | |near attTn7::pBR322 pRNA1-mCherry-FRT-KanR | ||
| | |None | ||
| | |Product of P1 from NDL-40 into MG1655 (NDL-43) | ||
|L.18.15 | |||
|- | |||
|NDL-46 | |||
|Tuner BL21 (NDL-37) | |||
|BL21 (DE3) LacZY mutant | |||
|pRARE2 (camR), pNDL-44 (ampR) | |||
|Strain for expression of His-bt-B-gal | |||
|48.3 | |||
|- | |- | ||
| | |NDL-47 | ||
| | |MG1655 | ||
| | |near attTn7::pRNA1-tdCherry | ||
| | |none | ||
| | |FLP-removed KanR from NDL-45 | ||
|L.18.9 | |||
|- | |- | ||
| | |NDL-48 | ||
| | |BW25113 | ||
| | |ΔMotB::KanR | ||
| | |none | ||
| | |Keio ΔMotB strain CGSC 9564 | ||
|L.19.1 | |||
|- | |- | ||
| | |NDL-49 | ||
| | |BW25113 | ||
| | |ΔMotA::KanR | ||
| | |none | ||
| | |Keio ΔMotA strain CGSC 9564 | ||
|L.19.1 | |||
|- | |- | ||
| | |NDL-50 | ||
| | |BW25113 | ||
| | |ΔFliC::KanR | ||
| | |none | ||
| | |Keio ΔfliC strain CGSC 9586 | ||
|L.19.1 | |||
|- | |- | ||
| | |NDL-51 | ||
| | |NDL-47(-3) | ||
| | |ΔMotB::kanR near attTn7::pRNA1-mCherry | ||
| | |none | ||
| | |NDL-47 with keio 9564 deletion | ||
|L.19.5 | |||
|- | |- | ||
| | |NDL-52 | ||
| | |NDL-47(-3) | ||
| | |ΔMotA::kanR near attTn7::pRNA1-mCherry | ||
| | |none | ||
| | |NDL-47 with keio 9565 deletion | ||
|L.19.5 | |||
|- | |- | ||
| | |NDL-53 | ||
| | |NDL-47(-3) | ||
| | |ΔfliC::kanR near attTN7::pRNA1-mCherry | ||
| | |none | ||
| | |NDL-47 with keio 9586 deletion | ||
|L.19.5 | |||
|- | |- | ||
| | |NDL-54 | ||
| | |MG1655 | ||
| | |ΔMotA::kanR | ||
| | |none (pKD46 cured) | ||
| | |MG1655 with keio 9565 deletion | ||
|L.20.5 | |||
|- | |- | ||
| | |NDL-55 | ||
| | |MG1655 | ||
| | |ΔMotB::kanR | ||
| | |none (pKD46 cured) | ||
| | |MG1655 with keio 9564 deletion | ||
|L.20.5 | |||
|- | |- | ||
| | |NDL-56 | ||
|NDL-47 | |||
|ΔMotA::kanR near attTn7::pRNA1-mCherry | |||
|none | |||
|P1vir:NDL-54 -> NDL-47 | |||
|L.20.7 | |||
|- | |||
|NDL-57 | |||
|NDL-47 | |||
|ΔmotB::kanR near attTn7::pRNA1-mCherry | |||
|none | |||
|p1vir:NDL-55 -> NDL-47 | |||
|L.20.7 | |||
|- | |- | ||
| | |NDL-58 | ||
| | |NDL-47 | ||
| | |ΔmotA near attTn7::pRNA1-mCherry | ||
| | |none | ||
| | |NDL-56 following FLP removal of KanR | ||
|L.20.11 | |||
|- | |- | ||
| | |NDL-59 | ||
| | |NDL-47 | ||
| | |ΔmotB near attTn7::pRNA1-mCherry | ||
| | |none | ||
| | |NDL-57 following FLP removal of KanR | ||
|L.20.11 | |||
|- | |- | ||
| | |NDL-93 | ||
|MG1655 | |MG1655 | ||
| | |ΔmotA | ||
| | |none | ||
| | |NDL-54 following FLP removal of KanR | ||
|L.24.6 | |||
|- | |- | ||
| | |NDL-94 | ||
|MG1655 | |MG1655 | ||
| | |ΔmotB | ||
| | |none | ||
| | |NDL-55 following FLP removal of KanR | ||
|L.24.6 | |||
|- | |||
|NDL-95 | |||
|BW25113 | |||
|ΔlacI::KanR | |||
|none | |||
|KanR lacI Keio strain | |||
|T.2.1 | |||
|- | |- | ||
| | |NDL-96 | ||
|MG1655 | |MG1655 | ||
| | |ΔlacI::KanR | ||
| | |none | ||
| | |P1vir-NDL-95 ---> MG1655 | ||
|T.2.1 | |||
|- | |- | ||
| | |NDL-97 | ||
| | |MG1655 | ||
| | |DE3 (specR) | ||
| | |none | ||
| | |P1vir-PMB14----> MG1655 | ||
|T.2.1 | |||
|- | |- | ||
| | |NDL-98 | ||
| | |BL21 | ||
|DE3 | |||
|pNDL-99 (pGK8-GFP003} | |||
| | | | ||
| | |T.3.1 | ||
| | |- | ||
|- | |NDL-99 | ||
| | |BL21 | ||
| | |DE3 | ||
|pNDL-100 (pGK8-GFP008} | |||
| | | | ||
| | |T.3.1 | ||
| | |- | ||
|- | |NDL-100 | ||
| | |BL21 | ||
| | |DE3 | ||
|pNDL-101 (pGK8-GFP012} | |||
| | | | ||
| | |T.3.1 | ||
| | |- | ||
|- | |NDL-101 | ||
| | |BL21 | ||
| | |DE3 | ||
|pNDL-102 (pGK8-GFP021} | |||
| | | | ||
| | |T.3.1 | ||
| | |- | ||
|- | |NDL-102 | ||
| | |BL21 | ||
| | |DE3 | ||
|pNDL-103 (pGK8-GFP037} | |||
| | | | ||
| | |T.3.1 | ||
| | |- | ||
|- | |NDL-103 | ||
| | |BL21 | ||
| | |DE3 | ||
|pNDL-104 (pGK8-GFP038} | |||
| | | | ||
| | |T.3.1 | ||
|- | |||
|- | |NDL-104 | ||
| | |BL21 | ||
|DE3 | |||
|pNDL-105 (pGK8-GFP053} | |||
| | | | ||
|T.3.1 | |||
|- | |||
|NDL-105 | |||
|BL21 | |||
|DE3 | |||
|pNDL-106 (pGK8-GFP100} | |||
| | | | ||
| | |T.3.1 | ||
|- | |||
|- | |NDL-106 | ||
|NDL- | |BL21 | ||
| | |DE3 | ||
| | |pNDL-107 (pGK8-GFP170} | ||
|pNDL- | |||
| | | | ||
| | |T.3.1 | ||
|- | |||
|NDL-107 | |||
|BL21 | |||
|DE3 | |||
|pNDL-108 (pGK8-GFP182} | |||
| | | | ||
|- | |T.3.1 | ||
|NDL- | |- | ||
| | |NDL-108 | ||
| | |TB10 | ||
| | |Wanner Strain with Heat Inducible Machinery | ||
|none | |||
| | | | ||
| | |L.something | ||
|- | |- | ||
|NDL- | |NDL-109 | ||
| | |CP78 (CGSC 4695) | ||
| | |thr,leu,his,arg auxotroph (relA WT) | ||
| | |none | ||
| | | | ||
| | |T.5.1 | ||
|- | |- | ||
|NDL- | |NDL-110 | ||
| | |CP79 (CGSC 4696) | ||
| | |thr,leu,his,arg auxotroph (relA2-- null) | ||
|none | |||
| | |||
| | | | ||
| | |T.5.1 | ||
| | |- | ||
| | |NDL-111 | ||
| | |BW25113 (CGSC 10159) | ||
| | |Keio RelA knockout (kanR) | ||
| | |none | ||
| | | | ||
| | |T.5.1 | ||
| | |- | ||
| | |NDL-153 | ||
|CP78 (NDL-109,CGSC 4695) | |||
|thr,leu,his,arg auxotroph (RelA WT) | |||
|pKD46 | |||
|Strain for Wanner Integration of GFP Reporters | |||
|T.2.2 | |||
|- | |||
|NDL-154 | |||
|CP79 (NDL-110,CGSC 4696) | |||
|thr,leu,his,arg auxotroph (relA2--null) | |||
|pKD46 | |||
|Strain for Wanner Integration of GFP Reporters | |||
|T.2.2 | |||
|- | |- | ||
|NDL- | |NDL-155 | ||
| | |TB10 | ||
| | |heat inducible labmda red prophage | ||
| | |none | ||
| | |pRNA-1/mCherry-FRT-kanR integrant | ||
|L. | |L.25.23 | ||
|- | |- | ||
|NDL- | |NDL-156 | ||
| | |TB10 | ||
| | |heat inducible labmda red prophage | ||
| | |none | ||
| | |pRNA-1/mCherry/mKate2 hybrid-FRT-kanR integrant | ||
|L. | |L.25.23 | ||
|- | |- | ||
|NDL- | |NDL-157 | ||
| | |TB10 | ||
| | |heat inducible labmda red prophage | ||
| | |none | ||
| | |pRNA-1/mKate2-FRT-kanR integrant | ||
|L. | |L.25.23 | ||
|- | |- | ||
|NDL- | |NDL-158 | ||
| | |NDL-93 | ||
| | |Δ motA | ||
| | |none | ||
| | |P1vir_NDL-155--> NDL-93 | ||
|L. | |L.25.23 | ||
|- | |- | ||
|NDL- | |NDL-159 | ||
| | |NDL-93 | ||
| | |Δ motA | ||
| | |none | ||
| | |P1vir_NDL-156--> NDL-93 | ||
|L. | |L.25.23 | ||
|- | |- | ||
|NDL- | |NDL-160 | ||
| | |NDL-93 | ||
| | |Δ motA | ||
| | |none | ||
| | |P1vir_NDL-157--> NDL-93 | ||
|L. | |L.25.23 | ||
|- | |- | ||
|NDL- | |NDL-161 | ||
| | |NDL-93 | ||
| | |Δ motA near attTN7 pRNA1-mCherry | ||
| | |none | ||
| | |FLP removed kanR from NDL-158 | ||
|L. | |L.25.31 | ||
|- | |- | ||
|NDL- | |NDL-162 | ||
| | |NDL-93 | ||
| | |Δ motA near attTN7 pRNA1-mCherry-mKate2 hybrid | ||
| | |none | ||
| | |FLP removed kanR from NDL-159 | ||
|L. | |L.25.31 | ||
|- | |- | ||
|NDL- | |NDL-162 | ||
| | |NDL-93 | ||
| | |Δ motA near attTN7 pRNA1-mKate2 | ||
| | |none | ||
| | |FLP removed kanR from NDL-160 | ||
|L. | |L.25.31 | ||
|- | |- | ||
|NDL- | |NDL-192 | ||
| | |TB10 | ||
| | |Xie lon-Venus fusion | ||
|none | |||
| | |From Sunney Xie Library | ||
| | |||
|- | |- | ||
|- | |- | ||
|NDL- | |NDL-193 | ||
| | |TB10 | ||
| | |Xie AtpD-Venus fusion | ||
| | |none | ||
| | |From Sunney Xie Library | ||
| | |- | ||
|- | |||
|NDL-194 | |||
|TB10 | |||
|Xie lig-Venus fusion | |||
|none | |||
|From Sunney Xie Library | |||
|- | |- | ||
|- | |- | ||
|NDL- | |NDL-195 | ||
| | |TB10 | ||
| | |Xie GapA-Venus fusion | ||
|none | |none | ||
| | |From Sunney Xie Library | ||
|- | |- | ||
|- | |- | ||
|NDL- | |NDL-196 | ||
| | |B. Subtilis | ||
| | |TMN-690 (pYqxm-mCherry, pHag-GFP) | ||
|none | |none | ||
| | |from Tom Norman | ||
|- | |- | ||
|- | |- | ||
|NDL- | |NDL-197 | ||
| | |B. Subtilis | ||
| | |TMN-694 (pYqxm-mCherry, pHag-GFP, ΔslrR) | ||
|none | |none | ||
| | |from Tom Norman | ||
| | |- | ||
|- | |- | ||
|NDL- | |NDL-198 | ||
| | |B. Subtilis | ||
|TMN- | |||
|none | |||
|from Tom Norman | |||
|- | |||
| | |||
| | |||
|- | |- | ||
|- | |- | ||
|NDL- | |NDL-199 | ||
|MG1655 | |MG1655 (CGSC 7740) | ||
| | |WT | ||
| | |none | ||
| | |Obtained from CGSC | ||
|L. | |L.27.1 | ||
|- | |- | ||
|NDL- | |NDL-200 | ||
|MG1655 | |MG1655 (CGSC 6300) | ||
| | |WT | ||
| | |none | ||
| | |Obtained from CGSC (3 colonies saved) | ||
|L. | |L.27.1 | ||
|- | |- | ||
|NDL- | |NDL-201 | ||
|MG1655 | |MG1655 (CGSC 6300) | ||
| | |near attTn7::pRNA1-mCherry-mKate2-kanR Hybrid | ||
| | |none | ||
| | |Obtained from transduction of NDL-200 with p1Vir.NDL-156 | ||
|L. | |L.27.2 | ||
|- | |||
|NDL-202 | |||
|MG1655 (CGSC 6300) | |||
|near attTn7::pRNA1-mCherry-mKate2 hybrid | |||
|none | |||
|obtained from NDL-201 by FLP-removal of kanR marker | |||
|L.27.4 | |||
|- | |- | ||
|NDL- | |NDL-203 | ||
|MG1655 | |MG1655 (CGSC 6300) | ||
| | |near attTn7::pRNA1-mCherry-mKate2 hybrid. NDL-54 ΔmotA-kanR | ||
|none | |none | ||
|NDL- | |p1Vir.NDL-54--> NDL-202 | ||
|L. | |L.27.7 | ||
|- | |- | ||
|NDL- | |NDL-204 | ||
|MG1655 | |MG1655 (CGSC 6300) | ||
| | |near attTn7::pRNA1-mCherry-mKate2 hybrid. NDL-54 ΔmotA | ||
|none | |none | ||
|NDL- | |obtained by FLP removal of kanR marker from NDL-203. NOTE: may still have pCP20. See L.27.8 | ||
|L. | |L.27.8 | ||
|- | |- | ||
|NDL- | |NDL-205 | ||
| | |NDL-162 | ||
| | |near attTn7::pRNA1-mCherry-mKate2, ΔmotA, Xie library lon-Venus. See L.29.4 for ID. | ||
|none | |none | ||
|NDL- | |P1vir.NDL-192--> NDL-162 | ||
|L. | |L.29.2 | ||
|- | |- | ||
|NDL- | |NDL-206 | ||
| | |NDL-162 | ||
| | |near attTn7::pRNA1-mCherry-mKate2, ΔmotA, Xie library AtpD-Venus. See L.29.4 for ID. | ||
|none | |none | ||
|NDL- | |P1vir.NDL-193--> NDL-162 | ||
|L. | |L.29.2 | ||
|- | |- | ||
|NDL- | |NDL-207 | ||
| | |NDL-162 | ||
| | |near attTn7::pRNA1-mCherry-mKate2, ΔmotA, Xie library LigA-VenusSee L.29.4 for ID. | ||
|none | |none | ||
|NDL- | |P1vir.NDL-194--> NDL-162 | ||
|L. | |L.29.2 | ||
|- | |- | ||
|NDL- | |NDL-208 | ||
| | |NDL-162 | ||
| | |near attTn7::pRNA1-mCherry-mKate2, ΔmotA, Xie library gapA-Venus. See L.29.4 for ID. | ||
|none | |none | ||
| | |P1vir.NDL-195--> NDL-162 | ||
| | |L.29.2 | ||
|- | |- | ||
|NDL- | |NDL-209 | ||
|NDL- | |Xie Library strain | ||
| | |markerless ΔmotA integrated into NDL-192. | ||
| | |none | ||
| | |Wanner integrant. | ||
| | |L.30.4 | ||
|- | |||
|NDL-210 | |||
|Xie Library strain | |||
|markerless ΔmotA integrated into NDL-193. | |||
|none | |||
|Wanner integrant. | |||
|L.30.4 | |||
|- | |- | ||
| | |NDL-211 | ||
| | |Xie Library strain | ||
| | |markerless ΔmotA integrated into NDL-194. | ||
| | |none | ||
| | |Wanner integrant. | ||
| | |L.30.4 | ||
|- | |- | ||
|NDL- | |NDL-212 | ||
| | |Xie Library strain | ||
| | |markerless ΔmotA integrated into NDL-195. | ||
| | |none | ||
| | |Wanner integrant. | ||
|L. | |L.30.4 | ||
|- | |- | ||
|NDL- | |NDL-237 | ||
| | |BW25113 | ||
| | |CGSC 8590, clpP Keio Knockout | ||
| | |none | ||
| | |From CGSC. | ||
| | |L.34.1 | ||
|- | |- | ||
|NDL- | |NDL-238 | ||
| | |BW25113 | ||
| | |CGSC 8917, ihfB Keio Knockout | ||
| | |none | ||
| | |From CGSC. | ||
|L. | |L.34.1 | ||
|- | |- | ||
|NDL- | |NDL-239 | ||
| | |BW25113 | ||
| | |CGSC 9111, hns Keio Knockout | ||
|none | |none | ||
| | |From CGSC. | ||
|L. | |L.34.1 | ||
|- | |- | ||
|NDL- | |NDL-240 | ||
| | |BW25113 | ||
| | |CGSC 9441, ihfA Keio Knockout | ||
| | |none | ||
| | |From CGSC. | ||
| | |L.34.1 | ||
|- | |- | ||
|NDL- | |NDL-241 | ||
| | |BW25113 | ||
| | |CGSC 10954, groL Keio Knockout | ||
| | |none | ||
| | |From CGSC. | ||
|L. | |L.34.1 | ||
|- | |- | ||
|NDL- | |NDL-242 | ||
| | |NDL-162 | ||
|near attTn7::pRNA1- | |MG1655 (CGSC7740) near attTn7::pRNA1-mCherry-mkate2 hybrid | ||
|none | |none | ||
| | |NDL-162 transduced with P1Vir-NDL-237 | ||
|L. | |L.34.2 | ||
|- | |- | ||
|NDL- | |NDL-243 | ||
| | |NDL-162 | ||
| | |MG1655 (CGSC7740) near attTn7::pRNA1-mCherry-mkate2 hybrid | ||
|none | |none | ||
| | |NDL-162 transduced with P1Vir-NDL-238 | ||
|L. | |L.34.2 | ||
|- | |- | ||
|NDL- | |NDL-244 | ||
| | |NDL-162 | ||
| | |MG1655 (CGSC7740) near attTn7::pRNA1-mCherry-mkate2 hybrid | ||
|none | |none | ||
| | |NDL-162 transduced with P1Vir-NDL-239 | ||
|L. | |L.34.2 | ||
|- | |- | ||
|NDL- | |NDL-245 | ||
| | |NDL-162 | ||
| | |MG1655 (CGSC7740) near attTn7::pRNA1-mCherry-mkate2 hybrid | ||
|none | |none | ||
| | |NDL-162 transduced with P1Vir-NDL-240 | ||
|L. | |L.34.2 | ||
|- | |- | ||
|NDL- | |NDL-246 | ||
|NDL- | |NDL-162 | ||
|MG1655 (CGSC7740) near attTn7::pRNA1-mCherry-mkate2 hybrid | |||
|none | |none | ||
|NDL- | |NDL-162 transduced with P1Vir-NDL-241 | ||
|L. | |L.34.2 | ||
|- | |- | ||
|NDL- | |NDL-247 | ||
|NDL- | |NDL-192 | ||
|Xie lon reporter (Xie Background), ΔmotA::kanR | |||
|none | |none | ||
|NDL- | |P1vir.NDL-209 --> NDL192 | ||
|L. | |L.30.7 | ||
|- | |- | ||
|NDL- | |NDL-248 | ||
|NDL- | |NDL-193 | ||
|Xie atpD reporter (Xie Background), ΔmotA::kanR | |||
|none | |none | ||
|NDL- | |P1vir.NDL-210 --> NDL193 | ||
|L. | |L.30.7 | ||
|- | |- | ||
|NDL- | |NDL-249 | ||
| | |NDL-194 | ||
| | |Xie lig reporter (Xie Background), ΔmotA::kanR | ||
|none | |none | ||
| | |P1vir.NDL-211 --> NDL194 | ||
|L. | |L.30.7 | ||
|- | |- | ||
|NDL- | |NDL-250 | ||
| | |NDL-195 | ||
| | |Xie gapA reporter (Xie Background), ΔmotA::kanR | ||
|none | |none | ||
| | |P1vir.NDL-212 --> NDL195 | ||
|L. | |L.30.7 | ||
|- | |- | ||
|NDL- | |NDL-254 | ||
| | |TMN1090 | ||
| | |amyE::Pyqxm-CFP (spcR) | ||
|none | |none | ||
| | |TMN1090 transduced with amyE::Pyqxm-CFP (spcR) | ||
| | |- | ||
|- | |- | ||
|NDL- | |NDL-255 | ||
| | |TMN985 | ||
| | |Δslr::mls | ||
|none | |none | ||
| | |TMN985 transduced with Δslr::mls | ||
| | |- | ||
|- | |- | ||
|NDL- | |NDL-256 | ||
| | |TMN1049 | ||
| | |TMN1049 Δslr::mls | ||
|none | |none | ||
| | |TMN1049 transduced with Δslr::mls | ||
| | |- | ||
|- | |- | ||
|NDL- | |NDL-257 | ||
|NDL- | |NDL-254 (TMN1090 amyE::Pyqxm-CFP (spcR)) | ||
| | |NDL-254 Δslr::mls | ||
|none | |none | ||
|NDL- | |NDL-254 transduced with Δslr::mls | ||
|- | |- | ||
|- | |- | ||
|NDL- | |NDL-258 | ||
| | |NDL-256 (TMN1049 Δslr::mls ) | ||
| | |NDL-256 hagA233V | ||
|none | |none | ||
|NDL- | |NDL-256 transduced with hagA233V (phleo) | ||
|- | |- | ||
|- | |- | ||
|NDL- | |NDL-259 | ||
| | |NDL-192 | ||
| | |near attTn7::mCherry-mkate2 hybrid specR | ||
|none | |none | ||
| | |Wanner integration of constitutive red of NDL-162 | ||
| | |L.31.20 | ||
|- | |- | ||
|NDL- | |NDL-260 | ||
| | |NDL-194 | ||
| | |near attTn7::mCherry-mkate2 hybrid specR | ||
|none | |none | ||
| | |Wanner integration of constitutive red of NDL-162 | ||
| | |L.31.20 | ||
|- | |- | ||
|NDL- | |NDL-261 | ||
|NDL-195 | |||
|near attTn7::mCherry-mkate2 hybrid specR | |||
|NDL- | |||
| | |||
|none | |none | ||
| | |Wanner integration of constitutive red of NDL-162 | ||
|L. | |L.31.20 | ||
|- | |- | ||
|NDL- | |NDL-262 | ||
| | |TMN1095 | ||
| | |TMN690 + pSpank-sinI (note: sinI - stop codon) | ||
|none | |none | ||
| | |Renamed TMN1095. | ||
|- | |- | ||
|- | |- | ||
|NDL- | |NDL-263 | ||
| | |TMN1096 | ||
| | |TMN694 + pSpank-sinI (note: sinI - stop codon) | ||
|none | |none | ||
| | |Renamed TMN1096. | ||
|- | |- | ||
|- | |- | ||
|NDL- | |NDL-264 | ||
| | |TMN1101 | ||
| | |TMN694 + > 2x sinI | ||
|none | |none | ||
| | |Renamed TMN1101. | ||
|- | |- | ||
|- | |- | ||
|NDL- | |NDL-265 | ||
| | |TMN1111 | ||
| | |TMN694 + 2x sinI | ||
|none | |none | ||
| | |Renamed TMN1111. | ||
|- | |- | ||
|- | |- | ||
|} | |} |
Latest revision as of 15:06, 30 October 2012
Paulsson Lab Strain Collection
- Location
- Electronic: Excel file at PAULSSON LAB\STRAINS\Paulsson_Strains
- Physical:
- Boxes: -80°C freezer in , bottom shelf, labeled "JP 1"
- Plates: -80°C freezer in , bottom shelf, labeled "96 A"
- Duplicates: somewhere in the Kishony Lab
- Criteria for inclusion
- Published (always!)
- Sent to another lab (always!)
- Received from another lab (most often, but use your judgement as to general utility)
- Useful (characterized parts; eg. fluorescent proteins, promoters)
- Duplicates in the Kishony Lab freezer
- All published strains
- Precious strains that seem worth it
- The JP collection in the Kishony lab should be maintained in numerical order (discontinuous)
- Guidelines
- For strains carrying plasmids, please add plasmid sequence files to PAULSSON LAB\DNA_sequences (if available)
- Antibiotic conventions: Ap (ampicillin), Kn (kanamycin), Cm (chloramphenicol), Tet (tetracyline), Spc (spectinomycin), Str (streptinomycin), Gm (gentamycin), Rif (rifampicin), Nal (naladixic acid),
Sending and Receiving strains
Strains
Shay's strains
Name | Background | Genotype | Plasmid(s) | Note |
---|---|---|---|---|
ST1 | DH5α | pUC19 | ||
ST2 | DH5α | pKN1562 | R1, par-, KanR | |
ST3 | DH5α | pBEU17 | R1, ts runaway | |
ST4 | MG1655 | ??? | "pAmp-ts CFP (ptet22) in MG1655 yfp (??)" | |
ST5 | DH5α | pBR322 | ||
ST6 | DH5α | pTH18kr | ||
ST7 | DH5α | pTH18ks1 | ||
ST8 | DH5α | pTH18ks5 | ||
ST9 | DH5α | pKH19ks1 | ||
ST10 | DH5α | pTH19ks5 | ||
ST11 | T1(MGZ2) | TetR, LacI | p(of ST11), Ptet-Citrus | Z2 is Silhavy modified version of Bernard Lutz Z1 repressor insert |
ST12 | MC1061 | p(of ST12), Ptet-Citrus | ||
ST13 | MC1061(L4) | TetR, LacI | p(of ST13), Plac-Citrus | |
ST14 | MC1061 | p(of ST14), Plac-Citrus | ||
ST15 | MC1061 | pST15 | pTSrep + RNAI | |
ST51 | CSH50 | pKG339 | ||
ST52 | MC1061 | pST52 | ||
ST55 | PMB27 | pST52 / pST54 | ||
ST61 | CSH50 | pKG339 / pST54 |
Juan's strains
Name | Background | Genotype | Plasmid(s) | Note |
---|---|---|---|---|
JM100 | =MG1655 | Sequenced | ||
JM101 | MG1655 | DFimH | =PMB 245 | |
JM102 | MG1655 | DFimH DFlhD | ||
JM103 | MG1655 | DFimA | =PMB 245 | |
JM104 | MG1655 | DFimH DFlhD DFlu::Cm | R: Chlm (1) | |
JM105 | MG1655 | DFimH DFlhD DFlu::Cm DGlgA | R: Chlm (1) |
Per's strains
Box1
Name | Background | Genotype | Plasmid(s) | Note | |
---|---|---|---|---|---|
PMB1 | DH5α | pKS390 | |||
PMB2 | DH5α | pKS391 | |||
PMB3 | DH5α | pKS392 | |||
PMB4 | DH5α | pKS393 | |||
PMB5 | DH5α | pKS394 | |||
PMB6 | DH5α | pKS395 | |||
PMB7 | DH5α | pKS396 | |||
PMB8 | DH5α | pKS397 | |||
PMB9 | DH5α | pKS398 | |||
PMB10 | DH5α | pKS399 | |||
PMB11 | DH5α | ||||
PMB12 | MC1061 | from Beckwith/Hochschild Lab | |||
PMB13 | ?? | "*" cured of plasmid; colonies much smaller than MG1655; MC1061? | |||
PMB14 | T1(MGZ2) | ST11 cured of plasmid | |||
PMB15 | ER2925 | from NEB | |||
PMB16 | DH5-alpha | pSC101-ts | |||
PMB17 | MC1061 | pSC101-ts | |||
PMB18 | XL1-Blue | ||||
PMB19 | TOP10 | ||||
PMB20 | TOP10 | pCR2.1 w/Citrus-ssrA(#9) | |||
PMB21 | MC1061 | pPM1 | |||
PMB22 | MC1061 | pPM2 | |||
PMB23 | MC1061 | pPM3 | |||
PMB24 | MC1061 | pPM4 | |||
PMB25 | MC1061 | pPM5 | |||
PMB26 | MC1061 | pPM6 | |||
PMB27 | MC1061(L4) | TetR and LacI | ST13 cured of plasmid | ||
PMB28 | PMB14 | pPM3 | |||
PMB29 | PMB14 | pPM5 | |||
PMB30 | PMB27 | pPM4 | |||
PMB31 | PMB27 | pPM6 | |||
PMB32 | MC1061 | pPM7 | |||
PMB33 | MC1061 | pPM8 | |||
PMB34 | MC1061 | pPM9 | |||
PMB35 | MC1061 | pPM10 | |||
PMB36 | MC1061 | pPM11 | |||
PMB37 | MC1061 | pPM12 | |||
PMB38 | MC1061 | pPM13 | |||
PMB39 | MC1061 | pPM14 | |||
PMB40 | PMB14 | pPM13 | |||
PMB41 | PMB27 | pPM14 | |||
PMB42 | MC1061 | from Kolter Lab | |||
PMB43 | MC1061 | p(Silver's Venus), from Ian | |||
PMB44 | MC1061 | pPM15 | |||
PMB45 | MC1061 | pPM16 | |||
PMB46 | DH5α | pUB23-R | |||
PMB47 | DH5α | pUB23-L | |||
PMB48 | DH5α | pUB23-M | |||
PMB49 | DH5α | pJT184 (CmR) | |||
PMB50 | PMB14 | pJT184 (CmR) | |||
PMB51 | DH5α | pUB23-K | |||
PMB52 | DH5α | pYPet-His (CmR) | |||
PMB53 | DH5α | pCyPet-His (CmR) | |||
PMB54 | PMB14 | pPM15 | |||
PMB55 | PMB27 | pPM16 | |||
PMB56 | |||||
PMB57 | MC1061 | pPM17 | |||
PMB58 | MC1061 | pPM18 | |||
PMB59 | MC1061 | pPM19 | |||
PMB60 | MC1061 | pPM20 |
Box2
Name | Background | Genotype | Plasmid(s) | Note | |
---|---|---|---|---|---|
PMB62 | MC1061 | pPM22 | 240 lacO repeats in pSC101 ts-Rep | ||
PMB63 | MC1061 | pPM23 | 24 lacO repeats in pSC101 ts-Rep | ||
PMB64 | MC1061 | pPM24 | 24 tetO repeats in pSC101 ts-Rep | ||
PMB65 | MC1061 | pPM25 | 120 lacO repeats in pSC101 ts-Rep | ||
PMB66 | MC1061 | pPM26 | 120 tetO repeats in pSC101 ts-Rep | ||
PMB67 | MC1061 | pPM27 | LacI-CFP, TetR-YFP in p15A (CmR, and AmpR!?!), forward | ||
PMB68 | MC1061 | pPM28 | LacI-CFP, TetR-YFP in p15A (CmR, and AmpR!?!), reverse | ||
PMB69 | MC1061 | pPM29 | Ptet-mCherry in pSC101 | ||
PMB70 | MC1061 | pPM30 | Plac-mCherry in pSC101 | ||
PMB74 | PMB14 | pPM29 | |||
PMB75 | PMB27 | pPM30 | |||
PMB76 | MC1061 | pPM31 | LacI-YFP in p15A (CmR, and AmpR!?!) | ||
PMB77 | MC1061 | pPM32 | LacI-CFP, TetR-YFP in p15A (CmR only) | ||
PMB78 | DH5α | pPM33 | LacI-YFP in p15A (CmR only) | ||
PMB79 | PMB14 | pPM34 | |||
PMB80 | PMB14 | pPM35 | |||
PMB81 | PMB27 | pPM36 | |||
PMB82 | PMB27 | pPM37 | |||
PMB83 | PMB14 | pPM38 | Ptet-mCherry in pSC101 ts-Rep | ||
PMB84 | PMB27 | pPM39 | Plac-mCherry in pSC101 ts-Rep | ||
PMB85 | MC1061 | pPM40 | |||
PMB86 | MC1061 | pPM41 | |||
PMB87 | MC1061 | pPM42 | |||
PMB89 | ECF259 | pPM32 | |||
PMB90 | AB1157 | pPM32 | |||
PMB91 | AB1157 | pPM33 | |||
PMB92 | AB1157 | pLAU53 | |||
PMB93 | AB1157 | pPM32/pPM24 | |||
PMB94 | AB1157 | pPM32/pPM26 | |||
PMB95 | AB1157 | pPM33/pPM22 | |||
PMB96 | AB1157 | pPM33/pPM23 | |||
PMB97 | AB1157 | pPM33/pPM25 | |||
PMB98 | PMB14 | pPM40 | |||
PMB99 | PMB14 | pPM41 | |||
PMB100 | PMB14 | pST26 | same as ST??? | ||
PMB101 | PMB14 | pST28 | same as ST??? | ||
PMB102 | MC4100 | galK::Plac-CFP | Hegreness et al., Science '06, via Kishony Lab | ||
PMB103 | MC4100 | galK::Plac-YFP | Hegreness et al., Science '06, via Kishony Lab | ||
PMB104 | PMB27 | galK::Plac-CFP | PMB102 transduced into PMB27; not confirmed by PCR, only by CFP expression | ||
PMB105 | PMB27 | galK::Plac-YFP | PMB103 transduced into PMB27; not confirmed by PCR, only by YFP expression | ||
PMB106 | PMB104 | pST27 | (Plac-Citrus on R1, par-) | ||
PMB107 | PMB104 | pPM41 | (Plac-Citrus on mini-F) | ||
PMB108 | PMB105 | pST29 | (Plac-mCherry on R1, par-) | ||
PMB110 | PMB27 | pST27 | (Plac-Citrus on R1, par-) | ||
PMB111 | PMB27 | pST29 | (Plac-mCherry on R1, par-) | ||
PMB112 | PMB104 | pST26 | (Ptet-Citrus on R1, par-) | ||
PMB113 | PMB104 | pPM40 | (Ptet-Citrus on mini-F) | ||
PMB114 | PMB105 | pST28 | (Ptet-mCherry on R1, par-) | ||
PMB115 | PMB105 | pPM42 | (Ptet-mCherry on mini-F) | ||
PMB116 | PMB104 | pPM40/pST28 | (Ptet-Citrus on mini-F; Ptet-mCherry on R1,par-) | ||
PMB117 | PMB104 | pPM40/pST29 | (Ptet-Citrus on mini-F; Plac-mCherry on R1,par-) | ||
PMB118 | PMB107 | pPM41/pST28 | (Plac-Citrus on mini-F; Ptet-mCherry on R1,par-) | ||
PMB119 | PMB107 | pPM41/pST29 | (Plac-Citrus on mini-F; Plac-mCherry on R1,par-) | ||
PMB120 | PMB14 | pPM42 | (Ptet-mCherry on mini-F) | ||
PMB121 | MC1061 | pPM43 | |||
PMB122 | MC1061 | pPM44 | |||
PMB123 | MC1061 | pPM45 | |||
PMB124 | MC1061 | pPM46 | |||
PMB125 | PMB14 | pPM43 | (Ptet-YPet on pSC101, ts-Rep) | ||
PMB126 | PMB27 | pPM44 | (Plac-YPet on pSC101, ts-Rep) | ||
PMB127 | PMB14 | pPM45 | (Ptet-YPet on pSC101) | ||
PMB128 | PMB27 | pPM46 | (Plac-YPet on pSC101) | ||
PMB129 | PMB14 | pST26/pPM30 | |||
PMB130 | PMB27 | pST26/pPM30 | (Ptet-Citrus on R1, par-; Ptet-mCherry on pSC101) | ||
PMB131 | PMB14 | pPM11 | |||
PMB132 | PMB27 | pPM12 |
Box3
Name | Background | Genotype | Plasmid(s) | Note | |
---|---|---|---|---|---|
PMB133 | PMB14 | pST26/pPM42 | |||
PMB134 | ST51 | pST26 | ST51 is CSH50/pKG339 (Plac-copA from Gerdes) | ||
PMB135 | ST51 | pST28 | |||
PMB136 | PMB14 | pST26/pKG339 | |||
PMB137 | PMB112 | pKG339 | |||
PMB138 | PMB114 | pKG339 | |||
PMB139 | ST52 | pST26 | |||
PMB140 | ST50 | pKG339 | |||
PMB141 | ST51 | pKG491 | |||
PMB142 | ST51 | pKN1562 | |||
PMB143 | ST51 | pST27 | |||
PMB144 | PMB12 | pST52 | |||
PMB146 | PMB27 | pST52 | |||
PMB147 | PMB27 | pST52/pKN1562 | |||
PMB148 | PMB27 | pKG339 | |||
PMB149 | PMB27 | pKG339/pST26 | |||
PMB150 | PMB27 | pKG339/pKG491 | |||
CSH50 | "CHS50" generated by curing plasmid from ST51 | ||||
PMB151 | CSH50 | pST52 | |||
PMB152 | CSH50 | pST52/pKN1562 | |||
PMB153 | CSH50 | pKG339 | |||
PMB154 | CSH50 | pKG339/pKN1562 | |||
PMB155*** | CSH50 | pKG339/pKG491 | ***(may be bad?!AmpR/IPTG-res subpopulation) | ||
PMB156 | PMB27 | pST26 | |||
PMB157 | PMB27 | pKG491 | |||
PMB158 | MC1061 | pPM47 | |||
PMB159 | MC1061 | pPM48 | |||
PMB160 | MC1061 | attTn7::Ptet-mCherry | |||
PMB161 | MC1061 | attTn7::Plac-mCherry | |||
PMB162 | PMB27 | attTn7::Ptet-mCherry | |||
PMB163 | PMB27 | attTn7::Plac-mCherry | |||
PMB164 | PMB14 | attTn7::Ptet-mCherry | |||
PMB165 | PMB27 | attTn7::Ptet-mCherry | pST26 | ||
PMB166 | PMB27 | attTn7::Plac-mCherry | pST27 | ||
PMB167 | PMB14 | attTn7::Ptet-mCherry | pST26 | ||
PMB168 | PMB27 | attTn7::Ptet-mCherry | pST26/pST52 | ||
PMB169 | PMB27 | attTn7::Plac-mCherry | pST27/pST52 | ||
PMB170 | PMB14 | attTn7::Ptet-mCherry | pST26/pST52 | ||
PMB171 | MC1061 | pKGCm | |||
PMB173 | CSH50 | pKGCm | |||
PMB175 | MC4100 | pKGCm | |||
PMB177 | AB1157 | pKG339 | |||
PMB178 | AB1157 | pKG339/pKG491 | |||
PMB179 | MC4100 | pKG339 | |||
PMB180 | MC4100 | pKG339/pKG491 | |||
PMB181 | MG1655 | pKG339 | |||
PMB182 | MG1655 | pKG339/pKG491 | |||
PMB183 | W3110 | pKG339 | |||
PMB184 | W3110 | pKG339/pKG491 | |||
PMB185 | MC1061 | forthcoming | pPM49 | ||
PMB186 | MC1061 | pPM50 | |||
PMB187 | MC1061 | pPM51 | |||
PMB188 | MC1061 | pPM52 | |||
PMB189 | MC1061 | pPM53 | |||
PMB190 | MC1061 | pPM54 |
Box4
Name | Background | Genotype | Plasmid(s) | Note |
---|---|---|---|---|
PMB191 | CSH50 | pPM54 | ||
PMB192 | DJ480 | pKG339 | ||
PMB193 | DJ480 | pPM54 | ||
PMB194 | CSH50 | pKG339/pPM50 | ||
PMB195 | CSH50 | pKG339/pPM51 | ||
PMB196 | CSH50 | pKG339/pPM52 | ||
PMB197 | CSH50 | pPM54/pKG491 | ||
PMB198 | DJ480 | pKG339/pKG491 | ||
PMB199 | DJ480 | pPM54/pPM50 | ||
PMB200 | DJ480 | pPM54/pPM51 | ||
PMB201 | DJ480 | pPM54/pPM52 | ||
PMB202 | DJ480 | pPM54/pKG491 | ||
PMB203 | MC1061 | pPM55 | ||
PMB204 | MC1061 | pPM56 | clone 1 (also preserved PMB204 with clone 3) | |
PMB205 | MC1061 | pPM57 | ||
PMB206 | MC1061 | pPM58 | ||
PMB207 | MC1061 | pPM59 | ||
PMB208 | PM27 | pPM60 | ||
PMB209 | PM27 | pPM61 | ||
PMB210 | PM27 | pPM62 | ||
PMB211 | PM27 | pPM63 | ||
PMB212 | PM27 | pPM64 | ||
PMB213 | PM27 | pPM65 | ||
PMB214 | PM27 | pPM66 | ||
PMB215 | PM27 | pPM67 | ||
PMB216 | MC1061 | pPM68 | ||
PMB217 | DJ480 | pPM54/pPM59 | ||
PMB218 | PMB27 | pPM70 | ||
PMB219 | PMB27 | pPM71 | ||
PMB220 | PMB27 | pPM72 | ||
PMB221 | PMB27 | pPM73 | ||
PMB222 | PMB27 | pPM74 | ||
PMB223 | CSH50 (Gerdes) | ΔfimA::kan | P1 trans. from Keio KO collection | |
PMB224 | CSH50 (CGSC 8085) | ΔfimA::kan | P1 trans. from Keio KO collection | |
PMB225 | MG1655seq (CGSC 7740) | ΔfimE::kan | P1 trans. from Keio KO collection | |
PMB226 | MG1655seq (CGSC 7740) | ΔthiC::kan | P1 trans. from Keio KO collection | |
PMB227 | PMB223 | pKG491 | ||
PMB228 | CGSC 8085 | pKG491 | ||
PMB229 | PMB224 | pKG491 | ||
PMB230 | PMB225 | pKG491 | ||
PMB231 | PMB226 | pKG491 | ||
PMB232 | CGSC 6412 | pKG491 | ||
PMB233 | PMB223 | pKG491/pKG339 | ||
PMB234 | CGSC 8085 | pKG491/pKG339 | ||
PMB235 | PMB224 | pKG491/pKG339 | ||
PMB236 | PMB225 | pKG491/pKG339 | ||
PMB237 | PMB226 | pKG491/pKG339 | ||
PMB238 | CGSC 6412 | pKG491/pKG339 | ||
PMB239 | CSH50 (KG) | ΔfimA | made by P1 from Keio, marker removed | |
PMB240 | CSH50 (KG) | ΔfimA | pPM54 | made by P1 from Keio, marker removed |
PMB241 | CSH50 (CGSC# 8085) | ΔfimA | made by P1 from Keio, marker removed | |
PMB242 | CSH50 (CGSC# 8085) | ΔfimA | pPM54 | |
PMB243 | CSH50 (CGSC# 8085) | pPM54 | ||
PMB244 | MG1655(seq) | ΔfimA | made by P1 from Keio, marker removed | |
PMB245 | MG1655(seq) | ΔfimH | made by P1 from Keio, marker removed | |
PMB246 | CSH50 (KG) | ΔfimH | made by P1 from Keio, marker removed | |
PMB247 | CSH50 (KG) | DfimH | pPM54 | |
PMB248 | ZK4 | recA56 | pPM54 | MC4100 background |
PMB249 | ZK356 | recA1 | pPM54 | MC1000 background |
PMB250 | MC1061 | pPM75 | ||
PMB251 | MC1061 | pPM76 | ||
PMB252 | MC1061 | pPM77 | ||
PMB253 | CGSC# 7740 | pKG491 | ||
PMB254 | DJ480 | pKG491 | ||
PMB255 | PMB239 | pPM54/pKG491 | ||
PMB256 | PMB246 | pPM54/pKG491 | ||
PMB257 | MC1061 | pPM78 | clone 1 | |
PMB258 | MC1061 | pPM79 | clone 3' | |
PMB259 | MC1061 | pPM80-3 | ||
PMB260 | MC1061 | pPM82 | clone 1 | |
PMB261 | MC1061 | pPM83 | clone 1 (also preserved PMB261 with clone 2) | |
PMB262 | MC1061 | pPM84 | clone 3 | |
PMB263 | MC1061 | pPM85 | clone 2 | |
PMB264 | MC1061 | pPM86 | ||
PMB265 | MC1061 | pPM87 | ||
PMB266 | MC1061 | pPM80-2 | ||
PMB267 | MC1061 | pPM90 | clone 4 | |
PMB268 | MC1061 | pPM88 | clone 2 | |
PMB269 | MC1061 | pPM89 | clone 1 | |
PMB270 | MC1061 | pPM88 | clone 1 |
Box5
Name | Background | Genotype | Plasmid(s) | Note |
---|---|---|---|---|
PMB271 | CSH50(KG) | pKG491/pPM82 | ||
PMB272 | CSH50(KG) | pKG491/pPM75 | ||
PMB273 | CSH50(KG) | pKG491/pPM83 | ||
PMB274 | DJ480 | pKG491/pPM82 | ||
PMB275 | DJ480 | pKG491/pPM75 | ||
PMB276 | DJ480 | pKG491/pPM83 | ||
PMB277 | CGSC#7740 | pKG491/pPM54 | ||
PMB278 | CGSC#7740 | pKG491/pPM82 | ||
PMB279 | CGSC#7740 | pKG491/pPM75 | ||
PMB280 | CGSC#7740 | pKG491/pPM83 | ||
PMB281 | CSH50 | pPM78 | ||
PMB282 | DJ480 | pPM78 | ||
PMB283 | CSH50 | pPM77 | ||
PMB284 | DJ480 | pPM77 | ||
PMB285 | CSH50 | pPM86 | ||
PMB286 | DJ480 | pPM86 | ||
PMB287 | CSH50 | pPM87 | ||
PMB288 | DJ480 | pPM87 | ||
PMB289 | CSH50 | pPM88-1 | ||
PMB290 | DJ480 | pPM88-1 | ||
PMB291 | CSH50 | pPM89 | ||
PMB292 | DJ480 | pPM89 | ||
PMB293 | MC1061 | pPM80-5 | ||
PMB294 | MC1061 | pPM80-6 | ||
PMB295 | MC1061 | pPM81 | clone 4 | |
PMB296 | MC1061 | pPM91 | ||
PMB297 | MC1061 | pPM92 | ||
PMB298 | MC1061 | pPM93 | ||
PMB299 | MC1061 | pPM94 | ||
PMB300 | MC1061 | pPM95 | ||
PMB301 | MC1061 | pPM96 | ||
PMB302 | MC1061 | pPM97 | ||
PMB303 | MC1061 | pPM98 | ||
PMB304 | PMB239 | pPM82 | ||
PMB305 | PMB239 | pPM75 | ||
PMB306 | PMB239 | pPM83 | ||
PMB307 | PMB239 | pKG491 | ||
PMB308 | PMB246 | pPM82 | ||
PMB309 | PMB246 | pKG491 | ||
PMB310 | DJ480 | pPM83 | ||
PMB311 | DJ480 | pKGCm | ||
PMB312 | PMB239 | pPM54/pKG491 | (made from PMB240) | |
PMB313 | PMB239 | pPM82/pKG491 | (made from PMB304) | |
PMB314 | PMB239 | pPM82/pPM91 | (made from PMB304) | |
PMB315 | PMB239 | pPM82/pPM93 | (made from PMB304) | |
PMB316 | PMB239 | pPM82/pPM94 | (made from PMB304) | |
PMB317 | PMB239 | pPM82/pPM97 | (made from PMB304) | |
PMB318 | PMB239 | pPM82/pPM98 | (made from PMB304) | |
PMB319 | PMB239 | pPM75/pKG491 | (made from PMB305) | |
PMB320 | PMB239 | pPM83/pKG491 | (made from PMB306) | |
PMB321 | PMB239 | pKG491/pPM83 | (made from PMB307) | |
PMB322 | PMB239 | pKG491/pKGCm | (made from PMB307) | |
PMB323 | DJ480 | pKGCm/pKG491 | (made from PMB311) | |
PMB324 | MC1061 | pPM99 | ||
PMB325 | MC1061 | pPM100 | ||
PMB326 | MC1061 | pPM101 | ||
PMB327 | MC1061 | pPM102 | ||
PMB328 | MC1061 | pPM103A | ||
PMB329 | MC1061 | pPM103B | ||
PMB330 | MC1061 | pPM106A | ||
PMB331 | MC1061 | pPM107A | ||
PMB332 | MC1061 | pPM110A | ||
PMB333 | MC1061 | pPM110B | ||
PMB334 | MC1061 | pPM111A | ||
PMB335 | DJ480 | pKG491/pPM106A | made from PMB254 | |
PMB336 | DJ480 | pKG491/pPM107A | made from PMB254 | |
PMB337 | DJ480 | pKG491/pPM110A | made from PMB254 | |
PMB338 | DJ480 | pKG491/pPM110B | made from PMB254 | |
PMB339 | DJ480 | pKG491/pPM111A | made from PMB254 | |
PMB340 | CSH50 | pKG491/pPM106A | made from ST50 | |
PMB341 | CSH50 | pKG491/pPM107A | made from ST50 | |
PMB342 | CSH50 | pKG491/pPM110A | made from ST50 | |
PMB343 | CSH50 | pKG491/pPM110B | made from ST50 | |
PMB344 | CSH50 | pKG491/pPM111A | made from ST50 | |
PMB345 | CSH50 | pKG491/pPM54/pKGCm | made from PMB197 | |
PMB346 | DJ480 | pKG491/pPM54/pKGCm | made from PMB202 | |
PMB347 | PMB246 | pKG491/pPM54/pKGCm | made from PMB256 |
Box 6
Name | Background | Genotype | Plasmid(s) | Note |
---|---|---|---|---|
PMB348 | MC1061 | pPM93T-1 | ||
PMB349 | MC1061 | pPM93T-2 | ||
PMB350 | MC1061 | pPM95T-2 | ||
PMB351 | MC1061 | pPM95T-3 | ||
PMB352 | MC1061 | pPM99T-1 | ||
PMB353 | MC1061 | pPM99T-2 | ||
PMB354 | MC1061 | pPM101T-1 | ||
PMB355 | MC1061 | pPM101T-2 | ||
PMB357 | DJ480 | pPM54/pPM90 | made from PMB193 | |
PMB358 | DJ480 | pPM54/pPM95T-2 | made from PMB193 | |
PMB359 | DJ480 | pPM54/pPM95T-3 | made from PMB193 | |
PMB360 | DJ480 | pPM54/pPM101T-1 | made from PMB193 | |
PMB361 | CSH50 DfimH | pPM54/pPM81 | made from PMB247 | |
PMB362 | CSH50 DfimH | pPM54/pPM93-1 | made from PMB247 | |
PMB363 | CSH50 DfimH | pPM54/pPM93T-2 | made from PMB247 | |
PMB364 | CSH50 DfimH | pPM54/pPM94 | made from PMB247 | |
PMB365 | CSH50 DfimH | pPM54/pPM91-3 | made from PMB247 | |
PMB366 | CSH50 DfimH | pPM54/pPM99 | made from PMB247 | |
PMB367 | CSH50 DfimH | pPM54/pPM99T-1 | made from PMB247 | |
PMB368 | CSH50 DfimH | pPM54/pPM99T-2 | made from PMB247 | |
PMB369 | CSH50 DfimH | pPM54/pPM100 | made from PMB247 | |
PMB370 | CSH50 DfimH | pKG491/pPM106A | made from PMB309 | |
PMB371 | CSH50 DfimH | pKG491/pPM107A | made from PMB309 | |
PMB372 | MC1061 | pPM112 | ||
PMB373 | MC1061 | pPM113 | ||
PMB374 | DJ480 | pPM82 | ||
PMB375 | DJ480 | pPM106A | ||
PMB376 | DJ480 | pPM107A | ||
PMB377 | MC4100 | pPM54 | ||
PMB378 | MC4100 | pPM82 | ||
PMB379 | MC4100 | pPM106A | ||
PMB380 | MC1061 | pPM114 | clone 1 | |
PMB381 | MC1061 | pPM115 | clone 1 | |
PMB382 | MC1061 | pPM95T-7 | ||
PMB383 | MC1061 | pPM95T-8 | ||
PMB384 | MC1061 | pPM116 | clone 1 | |
PMB385 | MC1061 | pPM117 | clone 1 | |
PMB386 | MC1061 | pPM118 | clone 1 | |
PMB387 | MC1061 | pPM119 | clone 1 | |
PMB388 | MC1061 | pPM120 | clone 1 | |
PMB389 | MC1061 | pPM121* | clone 1 | |
PMB390 | MC1061 | pPM122 | clone 2 | |
PMB391 | MC1061 | pPM123 | clone 3 | |
PMB392 | MC1061 | pPM124 | clone 1 | |
PMB393 | MC1061 | pPM125 | clone 1 | |
PMB394 | MC1061 | pPM126 | clone 2 | |
PMB395 | MC1061 | pPM127 | clone 3 | |
PMB396 | MC1061 | pPM130 | clone 1 | |
PMB397 | MC1061 | pPM131 | clone 1 | |
PMB398 | MC1061 | pPM132 | clone 1 | |
PMB399 | MC1061 | pPM133 | clone 1 | |
PMB400 | MC1061 | pPM134 | clone 1 | |
PMB401 | DJ480 | pPM54/pPM81 | made from PMB193 | |
PMB402 | DJ480 | pPM54/pPM90 | made from PMB193 | |
PMB403 | DJ480 | pPM54/pPM112 | made from PMB193 | |
PMB404 | DJ480 | pPM54/pPM113 | made from PMB193 | |
PMB405 | DJ480 | pPM54/pPM122 | made from PMB193 | |
PMB406 | DJ480 | pPM54/pPM123 | made from PMB193 | |
PMB407 | DJ480 | pPM54/pPM124 | made from PMB193 | |
PMB408 | DJ480 | pPM54/pPM125 | made from PMB193 | |
PMB409 | DJ480 | pPM54/pPM126 | made from PMB193 | |
PMB410 | DJ480 | pPM54/pPM127 | made from PMB193 | |
PMB411 | DJ480 | pPM54/pPM131 | made from PMB193 | |
PMB412 | DJ480 | pPM54/pPM132 | made from PMB193 | |
PMB413 | DJ480 | pPM54/pPM133 | made from PMB193 | |
PMB414 | DJ480 | pPM54/pPM134 | made from PMB193 | |
PMB415 | MC1061 | pPM135 | clone 1 | |
PMB416 | MC1061 | pPM136 | clone 2 | |
PMB417 | MC1061 | pPM137 | clone 1 | |
PMB418 | MC1061 | pPM138 | clone 1 | |
PMB419 | MC1061 | pPM139 | clone 1 | |
PMB420 | MC1061 | pPM140 | clone 9 | |
PMB421 | MC1061 | pPM141 | clone 2 | |
PMB422 | MC1061 | pKG491 | ||
PMB423 | MC1061 | pKN1562 | ||
PMB424 | DJ480 | pPM54/pACT7 | made from PMB193 |
Box 7
Name | Background | Genotype | Plasmid(s) | Note |
---|---|---|---|---|
PMB425 | DJ480 | pPM54/pPM135 | made from PMB193 | |
PMB426 | DJ480 | pPM54/pPM136 | made from PMB193 | |
PMB427 | DJ480 | pPM54/pPM137 | made from PMB193 | |
PMB428 | DJ480 | pPM54/pPM138 | made from PMB193 | |
PMB429 | DJ480 | pPM54/pPM139 | made from PMB193 | |
PMB430 | DJ480 | pPM54/pPM140 | made from PMB193 | |
PMB431 | DJ480 | pPM54/pPM141 | made from PMB193 | |
PMB432 | MC1061 | pPM91-3 | ||
PMB433 | DJ480 | pPM106A/pPM90 | made from PMB375 | |
PMB434 | DJ480 | pPM106A/pPM113 | made from PMB375 | |
PMB435 | DJ480 | pPM106A/pPM135 | made from PMB375 | |
PMB436 | DJ480 | pPM106A/pPM136 | made from PMB375 | |
PMB437 | DJ480 | pPM106A/pPM137 | made from PMB375 | |
PMB438 | DJ480 | pPM106A/pPM138 | made from PMB375 | |
PMB439 | DJ480 | pPM106A/pPM139 | made from PMB375 | |
PMB440 | DJ480 | pPM106A/pPM140 | made from PMB375 | |
PMB441 | DJ480 | pPM106A/pPM141 | made from PMB375 | |
PMB442 | DJ480 | pPM106A/pPM122 | made from PMB375 | |
PMB443 | DJ480 | pPM106A/pPM123 | made from PMB375 | |
PMB444 | DJ480 | pPM106A/pACT7 | made from PMB375 | |
PMB445 | DJ480 | pPM54/pACT7/pPM135 | made from PMB424 | |
PMB446 | DJ480 | pPM54/pACT7/pPM136 | made from PMB424 | |
PMB447 | DJ480 | pPM54/pACT7/pPM140 | made from PMB424 | |
PMB448 | DJ480 | attTn7::PLtet-mCherry | made using pPM47 for integration | |
PMB449 | MG1655 | attTn7::PLtet-mCherry | made using pPM47 for integration | |
PMB450 | MC4100 | attTn7::PLtet-mCherry | made using pPM47 for integration | |
PMB451 | DJ480 | pPM106A/pPM137 | made from PMB375; remake of PMB437 | |
PMB452 | DJ480 | pPM107A/pPM137 | made from PMB376 | |
PMB453 | DJ480 | attTn7::PLtet-mCherry | pPM54 | made from PMB448 |
PMB454 | DJ480 | attTn7::PLtet-mCherry | pPM106A | made from PMB448 |
PMB455 | DJ480 | pPM54/pPM142 (clone 7) | made from PMB193 | |
PMB456 | DJ480 | pUA66 | ||
PMB457 | DJ480 | pUA66/pPM136 | ||
PMB458 | DJ480 | pUA66/pPM137 | ||
PMB459 | DJ480 | pUA66/pPM139 | ||
PMB460 | DJ480 | pPM136 | ||
PMB461 | DJ480 | pPM137 | ||
PMB462 | DJ480 | pT7POL23 | ||
PMB463 | DJ480 | pPM136/pT7POL23 | made from PMB460 | |
PMB464 | DJ480 | pPM136/pT7POL26 | made from PMB460 | |
PMB465 | MC4100 | pPM54/pPM136 | made from PMB377 | |
PMB466 | MC4100 | pPM54/pPM137 | made from PMB377 | |
PMB467 | MC4100 | pPM54/pPM139 | made from PMB377 | |
PMB468 | MC4100 | pPM54/pPM140 | made from PMB377 | |
PMB469 | MC4100 | pPM54/pPM141 | made from PMB377 | |
PMB470 | MC4100 | pPM54/pPM142 | made from PMB377 | |
PMB471 | DJ480 | araB::T7RNAP_tetA | pPM54/pPM136 | made from PMB479 |
PMB472 | MC4100 | araB::T7RNAP_tetA | pPM54/pPM136 | made from PMB480 |
PMB473 | DJ480 | araB::T7RNAP_tetA | P1 from BL21-AI to DJ480 | |
PMB474 | MC4100 | araB::T7RNAP_tetA | P1 from BL21-AI to MC4100 | |
PMB475 | DJ480 | araB::T7RNAP_tetA | pPM54/pPM140 | made from PMB479 |
PMB476 | MC4100 | araB::T7RNAP_tetA | pPM54/pPM140 | made from PMB480 |
PMB477 | DJ480 | araB::T7RNAP_tetA | pPM136 | made from PMB473 |
PMB478 | MC4100 | araB::T7RNAP_tetA | pPM136 | made from PBM474 |
PMB479 | DJ480 | araB::T7RNAP_tetA | pPM54 | made from PMB473 |
PMB480 | MC4100 | araB::T7RNAP_tetA | pPM54 | made from PBM474 |
PMB481 | MC4100 | araB::T7RNAP_tetA | pPM54/pPM136/pLysS | made from PBM472 |
PMB482 | DJ480 | attP::tetR & lacIq | DJ480 transduced with P1 from PMB14 | |
PMB483 | DJ480 | ΔacrA, attP::tetR & lacIq | ST88 transduced with P1 from PMB14 | |
PMB484 | DJ480 | attP::tetR & lacIq | pPM54 | trf of PMB482 |
PMB485 | DJ480 | ΔacrA, attP::tetR & lacIq | pPM54 | trf of PMB483 |
PMB486 | DJ480 | attP::tetR & lacIq | pPM54/pPM93 | trf of PMB484 |
PMB487 | DJ480 | attP::tetR & lacIq | pPM54/pPM95 | trf of PMB484 |
PMB488 | DJ480 | ΔacrA, attP::tetR & lacIq | pPM54/pPM93 | trf of PMB485 |
PMB489 | DJ480 | ΔacrA, attP::tetR & lacIq | pPM54/pPM95 | trf of PMB485 |
PMB490 | TOP10 | pCP20 | from Dirk (Datsenko & Wanner) | |
PMB491 | BW27783 | araB::T7RNAP_tetA | P1 from PMB14 into BW27783 from Raul (nalR?) | |
PMB492 | BW27783 | araB::T7RNAP_tetA | pPM54 | made from PMB491 |
PMB493 | BW27783 | araB::T7RNAP_tetA | pPM54/pPM136 | made from PMB492 |
PMB494 | BW27783 | araB::T7RNAP_tetA | pPM54/pPM140 | made from PMB492 |
Box 8
Name | Background | Genotype | Plasmid(s) | Note |
---|---|---|---|---|
PMB495 | MC1061 | pPM144 | clone 3 | |
PMB496 | MC1061 | pPM145 | clone 1 | |
PMB497 | MC1061 | pPM146 | clone 1 | |
PMB498 | MC1061 | pPM147 | clone 2 | |
PMB499 | MC1061 | pPM148 | clone 1 | |
PMB500 | MC1061 | pPM149 | clone 1 | |
PMB501 | MC1061 | pPM150 | clone 1 | |
PMB502 | MC1061 | pPM151 | clone 1 | |
PMB503 | MC1061 | pPM152 | clone 1 | |
PMB504 | MC1061 | pPM153 | clone 1 | |
PMB505 | MC1061 | pPM154 | clone 3 | |
PMB506 | MC1061 | pPM155 | clone 1 | |
PMB507 | MC1061 | pPM156 | clone 1 | |
PMB508 | MC1061 | pPM157 | forthcoming | |
PMB509 | MC1061 | pPM158 | clone 1 | |
PMB510 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM144 | |
PMB511 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM148 | |
PMB512 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM152 | |
PMB513 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM153 | |
PMB514 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM156 | |
PMB515 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM158 | |
PMB516 | PMB492 | BW27783 araB::T7RNAP_tetA | pPM54/pPM144 | |
PMB517 | PMB492 | BW27783 araB::T7RNAP_tetA | pPM54/pPM148 | |
PMB518 | PMB492 | BW27783 araB::T7RNAP_tetA | pPM54/pPM152 | |
PMB519 | PMB492 | BW27783 araB::T7RNAP_tetA | pPM54/pPM153 | |
PMB520 | PMB492 | BW27783 araB::T7RNAP_tetA | pPM54/pPM156 | |
PMB521 | PMB492 | BW27783 araB::T7RNAP_tetA | pPM54/pPM158 | |
PMB522 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM156/pM152 | made from PMB514; selected on LBgluc(0.2%) / carbenicillin(20ug/ml) / Cm(3ug/ml) / Kn(35ug/ml) |
PMB523 | PMB492 | BW27783 araB::T7RNAP_tetA | pPM54/pPM156/pM152 | made from PMB520; selected on LBgluc(0.2%) / carbenicillin(20ug/ml) / Cm(3ug/ml) / Kn(35ug/ml) |
PMB524 | MC1061 | pPM160 | clone 1 | |
PMB525 | MC1061 | pPM161 | clone 1 | |
PMB526 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM160 | |
PMB527 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM161 | |
PMB528 | PMB492 | BW27783 araB::T7RNAP_tetA | pPM54/pPM160 | |
PMB529 | PMB492 | BW27783 araB::T7RNAP_tetA | pPM54/pPM161 | |
PMB530 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM160/pPM153 | |
PMB531 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM161/pPM152 | pSC101_Plac-copA_Kn / R1(-)_Pt7-gfpmut3_Cm / R1(-)_Pt7-mCherry_Ap |
PMB532 | PMB492 | BW27783 araB::T7RNAP_tetA | pPM54/pPM160/pPM153 | |
PMB533 | PMB492 | BW27783 araB::T7RNAP_tetA | pPM54/pPM161/pPM152 | |
PMB535 | MC1061 | pPM145 A5 | clone A+5; from original transformation, restruck on Ap20; glycerol stock cultured in LB/Ap25 | |
PMB536 | MC1061 | pPM145 A6 | clone A+6; from original transformation, restruck on Ap20; glycerol stock cultured in LB/Ap25 | |
PMB537 | MC1061 | pPM162 | clone-1; selected on Ap10, restruck on Ap20; glycerol stock cultured in LB/Ap25 | |
PMB538 | MC1061 | pPM163 | clone-1; selected on Ap10, restruck on Ap20; glycerol stock cultured in LB/Ap25 | |
PMB539 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM160-1 | redo of PMB526. Selected on Kn35/Cm8, restruck on same; glycerol stock cultured in LB/Cm5 (forgot Kn) |
PMB540 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM160-2 | Selected on Kn35/Cm8, restruck on same; glycerol stock cultured in LB/Cm5 (forgot Kn) |
PMB541 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM145 (A5) | selected on Ap20, restruck on Ap20 with Kn5 overlay; glycerol stock cultured in LBglucose/Kn35/Cb25 |
PMB542 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM162-1 | selected on Ap20, restruck on Ap20 with Kn5 overlay; glycerol stock cultured in LBglucose/Kn35/Cb25 |
PMB543 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM163-1(1) | clone-1, selected on Ap20, restruck on Ap20 with Kn5 overlay; glycerol stock cultured in LBglucose/Kn35/Cb25 |
PMB544 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM163-1(2) | clone-2(small), selected on Ap20, restruck on Ap20 with Kn5 overlay; glycerol stock cultured in LBglucose/Kn35/Cb25 |
PMB545 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM145 A5-2 | selected on Ap20, stored in fridge, restruck on Ap20; glycerol stock cultured in LBglucose/Kn35/Cb20 |
PMB546 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM163-1a | selected on Ap20, stored in fridge, restruck on Ap20; glycerol stock cultured in LBglucose/Kn35/Cb20; not the same as PMB543=479/163-1(1) |
PMB547 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM163-1b | selected on Ap20, stored in fridge, restruck on Ap20; glycerol stock cultured in LBglucose/Kn35/Cb20 |
PMB548 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM163-1c | selected on Ap20, stored in fridge, restruck on Ap20; glycerol stock cultured in LBglucose/Kn35/Cb20 |
PMB549 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM145 (A5) | 145A5 plasmid prep from PMB535 grown in Cb20; trfs selected on Ap10; glycerol stock cultured in LBglucose/Cb10 (forgot Kn) |
PMB550 | MC1061 | pPM164 (2) - no good | clone 2; trfs selected on Ap50; restruck on Ap12.5; glycerol stock cultured in LB/Ap50 | |
PMB551 | MC1061 | pPM164 (3) - no good | clone 3; trfs selected on Ap50; restruck on Ap12.5; glycerol stock cultured in LB/Ap50 | |
PMB552 | MC1061 | pPM165 (4) | clone 4; trfs selected on Ap50; restruck on Ap12.5; glycerol stock cultured in LB/Ap50 | |
PMB553 | MC1061 | pPM165 (5) - no good | clone 5; trfs selected on Ap50; restruck on Ap12.5; glycerol stock cultured in LB/Ap50 | |
PMB554 | MC1061 | pPM166 | clone 25-6; trfs selected on LB/Ap25; glycerol stock cultured in LB/Cb10 | |
PMB555 | MC1061 | pPM167 | clone 80-6; trfs selected on LB/Ap80; glycerol stock cultured in LB/Cb10 | |
PMB556 | MC1061 | pPM168 | clone 80-7; trfs selected on LB/Ap80; glycerol stock cultured in LB/Cb10 | |
PMB557 | MC1061 | pPM169 | clone T1-1; trfs selected on LB/Ap12; restruck on LBglucose/Ap20; glycerol stock cultured in LB/Ap20 | |
PMB558 | MC1061 | pPM170 | clone T2-1; trfs selected on LB/Ap12; restruck on LBglucose/Ap20; glycerol stock cultured in LB/Ap20 | |
PMB559 | MC1061 | pPM171 | clone T3-1; trfs selected on LB/Ap12; restruck on LBglucose/Ap20; glycerol stock cultured in LB/Ap20 | |
PMB560 | MC1061 | pPM172 | clone E1-1; trfs selected on LB/Ap12; restruck on LBglucose/Ap20; glycerol stock cultured in LB/Ap20 | |
PMB561 | MC1061 | pPM173 | clone E2-1; trfs selected on LB/Ap12; restruck on LBglucose/Ap20; glycerol stock cultured in LB/Ap20 | |
PMB562 | MC1061 | pPM174 | clone E3-1; trfs selected on LB/Ap12; restruck on LBglucose/Ap20; glycerol stock cultured in LB/Ap20 | |
PMB563 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM165 | trfs selected and restruck on LBglucose/Kn35/Ap10; glycerol stock cultured in LBglucose/Ap20 |
PMB564 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM169 | trfs selected and restruck on LBglucose/Kn35/Ap10; glycerol stock cultured in LBglucose/Ap20 |
PMB565 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM170 | trfs selected and restruck on LBglucose/Kn35/Ap10; glycerol stock cultured in LBglucose/Ap20 |
PMB566 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM171 | trfs selected and restruck on LBglucose/Kn35/Ap10; glycerol stock cultured in LBglucose/Ap20 |
PMB567 | MC1061 | pPM175 | trfs selected on LB/Ap12; glycerol stock cultured in LB/Ap25 | |
PMB568 | MC1061 | pPM176 | trfs selected on LB/Ap12; glycerol stock cultured in LB/Ap25 | |
PMB569 | MC1061 | pPM177 | trfs selected on LB/Ap12; glycerol stock cultured in LB/Ap25 | |
PMB570 | MC1061 | pPM178 | trfs selected on LB/Ap12; glycerol stock cultured in LB/Ap25 | |
PMB571 | MC1061 | pPM179 | trfs selected on LB/Ap25; restruck on LB/Ap20; glycerol stock cultured in LB/Ap25 | |
PMB572 | PMB479 | DJ480 araB::T7RNAP_tetA | pPM54/pPM179 | selected on LBgluc(0.2%)/Kn35/Ap20, grown at 30°C; glycerol stock cultured in LB/Cb25 |
Box 9
Name | Background | Genotype | Plasmid(s) | Note |
---|---|---|---|---|
PMB573 | MG1655 | DJ480 araB::T7RNAP_tetA | pKGCm | made from PMB473; selected on LBgluc(0.2%)/Cm15 |
PMB574 | MG1655 | DJ480 araB::T7RNAP_tetA | pPM136/pKGCm | made from PMB477; selected on LBgluc(0.2%)/Ap40/Cm15 |
PMB575 | MG1655 | DJ480 araB::T7RNAP_tetA | pPM54/pKGCm | made from PMB479; selected on LBgluc(0.2%)/Kn35/Cm8 |
PMB576 | MG1655 | DJ480 araB::T7RNAP_tetA | pPM54/pPM136/pKGCm | made from PMB471; selected on LBgluc(0.2%)/Kn35/Cb32/Cm4 |
PMB577 | MG1655 | DJ480 araB::T7RNAP_tetA | pPM54/pPM170/pKGCm | made from PMB565; selected on LBgluc(0.2%)/Kn35/Cb32/Cm4 |
PMB578 | MC1061 | pPM180 | clone 1 | |
PMB579 | MC1061 | pPM181 | clone 1 | |
PMB580 | MC1061 | pAM238 | SpcR | |
PMB581 | MC1061 | pNG162 | SpcR | |
PMB582 | MC1061 | pNG162a | SpcR | |
PMB583 | MC1061 | pKG339 | TetR | |
PMB584 | MC1061 | pPM182 | SpcR; clone 1-1 | |
PMB585 | MC1061 | pPM183 | SpcR; clone 2-1 | |
PMB586 | MC1061 | pPM184 | SpcR; clone 5-1 | |
PMB587 | MC1061 | pPM185 | SpcR; clone 6-1 | |
PMB588 | PMB473 | pPM182 | SpcR; clone 1-1 | |
PMB589 | PMB473 | pPM183 | SpcR; clone 2-1 | |
PMB590 | PMB473 | pKGCm/pPM184 | SpcR; clone 5-1 | |
PMB591 | PMB473 | pKGCm/pPM185 | SpcR; clone 6-1 | |
PMB592 | MC1061 | pPM186 | SpcR; clone A-1 | |
PMB593 | MC1061 | pPM187 | SpcR; clone B-1 | |
PMB594 | PMB473 | pPM186 | ||
PMB595 | PMB473 | pPM187 | ||
PMB596 | PMB473 | pPM136/pPM182 | made from PMB477 | |
PMB597 | PMB473 | pPM136/pPM183 | made from PMB477 | |
PMB598 | PMB473 | pPM136/pPM186 | made from PMB477 | |
PMB599 | PMB473 | pPM136/pPM187 | made from PMB477 | |
PMB600 | PMB473 | pKGCm/pPM186 | made from PMB573 | |
PMB601 | PMB473 | pKGCm/pPM187 | made from PMB573 | |
PMB602 | PMB473 | pKGCm/pPM136/pPM184 | made from PMB574 | |
PMB603 | PMB473 | pKGCm/pPM136/pPM185 | made from PMB574 | |
PMB604 | PMB473 | pKGCm/pPM136/pPM186 | made from PMB574 | |
PMB605 | PMB473 | pKGCm/pPM136/pPM187 | made from PMB574 |
Nate's Strains
Name | Background | Genotype | Plasmid(s) | Note | Notebook Page | |
---|---|---|---|---|---|---|
NDL-1 | One Shot 2T1R (Invitrogen) | ccdB survival cells. Recovered from pGRG37 by curing. | L.2.14 | |||
NDL-2 | MC4100 | Lac- | pNDL-17, Alon 2-A-6 | e.9.2 | ||
NDL-3 | MC4100 | Lac- | pNDL-17, Alon 11-A-6 | E.9.2 | ||
NDL-4 | MC4100 | Lac- | pNDL-17, Alon 13-B-9 | E.9.2 | ||
NDL-5 | MC4100 | Lac- | pNDL-17, Alon 18-E-2 | E.9.2 | ||
NDL-6 | MG1655 | pNDL-18 | Promoterless GFP, +CFP, -term | L.6.14 | ||
NDL-7 | MG1655 | pNDL-19 | Promoterless GFP,-CFP, +term | L.6.14 | ||
NDL-8 | MG1655 | pNDL-20 | promoterless GFP,+term,+CFP | L.6.14 | ||
NDL-9 | MG1655 | attTn7::(no promoter)-GFPmut2 | Generated by curing NDL-6 of pNDL-18 | L.6.28 | ||
NDL-10 | MG1655 | attTN7::B0015-(no promoter)-GFPmut2 | Generated by curing NDL-7 of pNDL-19 | L.6.28 | ||
NDL-11 | MG1655 | attTn7::B0015-(no promoter)-GFPmut2 | Generated by curing NDL-8 of pNDL-20 | L.6.28 | ||
NDL-12 | MG1655 | pNDL-21 | Bright ColE1 RNA1-tdCherry on R1 | L.7.19 | ||
NDL-13 | MG1655 | pNDL-22 | Bright ColE1 RNA1-tdCherry on R1 | L.7.19 | ||
NDL-14 | MG1655 | pNDL-23 | very bright ColE1 RNA1-tdCherry on R1 | L.7.19 | ||
NDL-15 | MG1655 | pNDL-24 | very bright ColE1 RNA1-tdCherry on R1 | L.7.19 | ||
NDL-16 | MG1655 | pNDL-25 | Intermediate bright ColE1 RNA1-tdCherry on R1 | L.7.19 | ||
NDL-17 | MG1655 | pNDL-26 | Intermediate bright ColE1 RNA1-tdCherry on R1 | L.7.19 | ||
NDL-18 | MG1655 | pNDL-31 | Bright ColE1 RNA1-tdCherry in pNDL6 integration vector | L.11.11 | ||
NDL-19 | MG1655 | pNDL-32 | Very bright ColE1 RNA1-tdCherry in pNDL-6 integration vecotr | L.11.11 | ||
NDL-20 | MG1655 | pNDL-33 | Very bright ColE1 RNA1-tdCherry in pNDL-6 integration vector | L.11.11 | ||
NDL-21 | MG1655 | attTn7::pRNA1(bright)-tdCherry | none | bright ColE1 RNA1-tdCherry integrated at Tn7 (cured of pNDL-31) | L.11.19 | |
NDL-22 | MG1655 | attTn7::pRNA1(very bright)-tdCherry | none | Very bright ColE1 RNA1-tdCherry integrated at Tn7 (cured of pNDL-32) | L.11.19 | |
NDL-23 | MG1655 | attTn7::pRNA1(very bright)-tdCherry | none | Very bright ColE1 RNA1-tdCherry integrated at Tn7 (cured of pNDL-33) | L.11.19 | |
NDL-24 | MG1655 | pNDL-41 | Contains plasmid with FRT-flanked KanR gene. For Integrations. | |||
NDL-25 | DH5-Alpha | 'WT' | none | Stock for cloning strain-- plain DH5 alpha cells. | ||
NDL-26 | BL21-AI (Invitrogen) | pNDL-44 | Contains plasmid with T7 His-bt-B-gal expression construct | 39.25 | ||
NDL-27 | MG1655 | pNDL-46 | Strain for integration of 1-E-3 Alon Clone | L.17.1 | ||
NLD-28 | MG1655 | pNDL-47 | Strain for Integration of 1-E-5 Alon Clone | L.17.1 | ||
NDL-29 | MG1655 | pNDL-48 | Strain for Integration of 2-A-6 Alon Clone | L.17.1 | ||
NDL-30 | MG1655 | pNDL-49 | Strain for Integration of 2-C-11 Alon Clone | L.17.1 | ||
NDL-31 | MG1655 | pNDL-50 | Strain for Integration of 2-F-4 Alon Clone | L.17.1 | ||
NDL-32 | MG1655 | none | NDL-27 cured of pNDL-46. Alon clone integrant. | L.17.2 | ||
NDL-33 | MG1655 | none | NDL-28 cured of pNDL-47. Alon clone integrant. | L.17.2 | ||
NDL-34 | MG1655 | none | NDL-29 cured of pNDL-48. Alon clone integrant. | L.17.2 | ||
NDL-35 | MG1655 | none | NDL-30 cured of pNDL-49. Alon clone integrant. | L.17.2 | ||
NDL-36 | MG1655 | none | NDL-31 cured of pNDL-50. Alon clone integrant. | L.17.2 | ||
NDL-37 | BL-21 | lacY1 mutation (Novagen says its a LacZY mutation) | none | LacZ- strain for protein expression. Used in purificaton of btB-gal | 42.1 | |
NDL-38 | NDL-37 (Novagen Tuner DE3) | lacY1 mutation (Novagen says its a LacZY mutation) | pNDL-44 | For purification of btB-gal | 42.1 | |
NLD-39 | MG1655 | Wanner strain for integration into chromosome | pKD46 (pNDL-???) | |||
NDL-40 | MG1655 | pNDL-52 pRNA1-mCherry integrated downstream of attTn7 | cured of pKD46 | Constitutive mCherry strain for library, prior to P1 transduction | L.18.6 | |
NDL-41 | BL-21 AI | Contains Ara-Inducible T7 Polymerase | pNDL-96 | For expression of GST-cotA | 43.9 | |
NDL-42 | Rosetta2 DE3 (Novagen) | BL21 derived Strain from Novagen with codon+ plasmid | pRARE2 | For recombinant protein expression with rare codons | L.47.1 | |
NDL-43 | MG1655 (CGSC 7740) | Fully sequenced MG1655 Strain | none | Host strain for library construction | L.18.15 | |
NDL-44 | Tuner BL21 (NDL-37) | BL21 (DE3) lacZY mutant | pRARE2 (camR) | Codon+ Tuner Strain | ex.48.2 | |
NDL-45 | MG1655 | near attTn7::pBR322 pRNA1-mCherry-FRT-KanR | None | Product of P1 from NDL-40 into MG1655 (NDL-43) | L.18.15 | |
NDL-46 | Tuner BL21 (NDL-37) | BL21 (DE3) LacZY mutant | pRARE2 (camR), pNDL-44 (ampR) | Strain for expression of His-bt-B-gal | 48.3 | |
NDL-47 | MG1655 | near attTn7::pRNA1-tdCherry | none | FLP-removed KanR from NDL-45 | L.18.9 | |
NDL-48 | BW25113 | ΔMotB::KanR | none | Keio ΔMotB strain CGSC 9564 | L.19.1 | |
NDL-49 | BW25113 | ΔMotA::KanR | none | Keio ΔMotA strain CGSC 9564 | L.19.1 | |
NDL-50 | BW25113 | ΔFliC::KanR | none | Keio ΔfliC strain CGSC 9586 | L.19.1 | |
NDL-51 | NDL-47(-3) | ΔMotB::kanR near attTn7::pRNA1-mCherry | none | NDL-47 with keio 9564 deletion | L.19.5 | |
NDL-52 | NDL-47(-3) | ΔMotA::kanR near attTn7::pRNA1-mCherry | none | NDL-47 with keio 9565 deletion | L.19.5 | |
NDL-53 | NDL-47(-3) | ΔfliC::kanR near attTN7::pRNA1-mCherry | none | NDL-47 with keio 9586 deletion | L.19.5 | |
NDL-54 | MG1655 | ΔMotA::kanR | none (pKD46 cured) | MG1655 with keio 9565 deletion | L.20.5 | |
NDL-55 | MG1655 | ΔMotB::kanR | none (pKD46 cured) | MG1655 with keio 9564 deletion | L.20.5 | |
NDL-56 | NDL-47 | ΔMotA::kanR near attTn7::pRNA1-mCherry | none | P1vir:NDL-54 -> NDL-47 | L.20.7 | |
NDL-57 | NDL-47 | ΔmotB::kanR near attTn7::pRNA1-mCherry | none | p1vir:NDL-55 -> NDL-47 | L.20.7 | |
NDL-58 | NDL-47 | ΔmotA near attTn7::pRNA1-mCherry | none | NDL-56 following FLP removal of KanR | L.20.11 | |
NDL-59 | NDL-47 | ΔmotB near attTn7::pRNA1-mCherry | none | NDL-57 following FLP removal of KanR | L.20.11 | |
NDL-93 | MG1655 | ΔmotA | none | NDL-54 following FLP removal of KanR | L.24.6 | |
NDL-94 | MG1655 | ΔmotB | none | NDL-55 following FLP removal of KanR | L.24.6 | |
NDL-95 | BW25113 | ΔlacI::KanR | none | KanR lacI Keio strain | T.2.1 | |
NDL-96 | MG1655 | ΔlacI::KanR | none | P1vir-NDL-95 ---> MG1655 | T.2.1 | |
NDL-97 | MG1655 | DE3 (specR) | none | P1vir-PMB14----> MG1655 | T.2.1 | |
NDL-98 | BL21 | DE3 | pNDL-99 (pGK8-GFP003} | T.3.1 | ||
NDL-99 | BL21 | DE3 | pNDL-100 (pGK8-GFP008} | T.3.1 | ||
NDL-100 | BL21 | DE3 | pNDL-101 (pGK8-GFP012} | T.3.1 | ||
NDL-101 | BL21 | DE3 | pNDL-102 (pGK8-GFP021} | T.3.1 | ||
NDL-102 | BL21 | DE3 | pNDL-103 (pGK8-GFP037} | T.3.1 | ||
NDL-103 | BL21 | DE3 | pNDL-104 (pGK8-GFP038} | T.3.1 | ||
NDL-104 | BL21 | DE3 | pNDL-105 (pGK8-GFP053} | T.3.1 | ||
NDL-105 | BL21 | DE3 | pNDL-106 (pGK8-GFP100} | T.3.1 | ||
NDL-106 | BL21 | DE3 | pNDL-107 (pGK8-GFP170} | T.3.1 | ||
NDL-107 | BL21 | DE3 | pNDL-108 (pGK8-GFP182} | T.3.1 | ||
NDL-108 | TB10 | Wanner Strain with Heat Inducible Machinery | none | L.something | ||
NDL-109 | CP78 (CGSC 4695) | thr,leu,his,arg auxotroph (relA WT) | none | T.5.1 | ||
NDL-110 | CP79 (CGSC 4696) | thr,leu,his,arg auxotroph (relA2-- null) | none | T.5.1 | ||
NDL-111 | BW25113 (CGSC 10159) | Keio RelA knockout (kanR) | none | T.5.1 | ||
NDL-153 | CP78 (NDL-109,CGSC 4695) | thr,leu,his,arg auxotroph (RelA WT) | pKD46 | Strain for Wanner Integration of GFP Reporters | T.2.2 | |
NDL-154 | CP79 (NDL-110,CGSC 4696) | thr,leu,his,arg auxotroph (relA2--null) | pKD46 | Strain for Wanner Integration of GFP Reporters | T.2.2 | |
NDL-155 | TB10 | heat inducible labmda red prophage | none | pRNA-1/mCherry-FRT-kanR integrant | L.25.23 | |
NDL-156 | TB10 | heat inducible labmda red prophage | none | pRNA-1/mCherry/mKate2 hybrid-FRT-kanR integrant | L.25.23 | |
NDL-157 | TB10 | heat inducible labmda red prophage | none | pRNA-1/mKate2-FRT-kanR integrant | L.25.23 | |
NDL-158 | NDL-93 | Δ motA | none | P1vir_NDL-155--> NDL-93 | L.25.23 | |
NDL-159 | NDL-93 | Δ motA | none | P1vir_NDL-156--> NDL-93 | L.25.23 | |
NDL-160 | NDL-93 | Δ motA | none | P1vir_NDL-157--> NDL-93 | L.25.23 | |
NDL-161 | NDL-93 | Δ motA near attTN7 pRNA1-mCherry | none | FLP removed kanR from NDL-158 | L.25.31 | |
NDL-162 | NDL-93 | Δ motA near attTN7 pRNA1-mCherry-mKate2 hybrid | none | FLP removed kanR from NDL-159 | L.25.31 | |
NDL-162 | NDL-93 | Δ motA near attTN7 pRNA1-mKate2 | none | FLP removed kanR from NDL-160 | L.25.31 | |
NDL-192 | TB10 | Xie lon-Venus fusion | none | From Sunney Xie Library | ||
NDL-193 | TB10 | Xie AtpD-Venus fusion | none | From Sunney Xie Library | ||
NDL-194 | TB10 | Xie lig-Venus fusion | none | From Sunney Xie Library | ||
NDL-195 | TB10 | Xie GapA-Venus fusion | none | From Sunney Xie Library | ||
NDL-196 | B. Subtilis | TMN-690 (pYqxm-mCherry, pHag-GFP) | none | from Tom Norman | ||
NDL-197 | B. Subtilis | TMN-694 (pYqxm-mCherry, pHag-GFP, ΔslrR) | none | from Tom Norman | ||
NDL-198 | B. Subtilis | TMN- | none | from Tom Norman | ||
NDL-199 | MG1655 (CGSC 7740) | WT | none | Obtained from CGSC | L.27.1 | |
NDL-200 | MG1655 (CGSC 6300) | WT | none | Obtained from CGSC (3 colonies saved) | L.27.1 | |
NDL-201 | MG1655 (CGSC 6300) | near attTn7::pRNA1-mCherry-mKate2-kanR Hybrid | none | Obtained from transduction of NDL-200 with p1Vir.NDL-156 | L.27.2 | |
NDL-202 | MG1655 (CGSC 6300) | near attTn7::pRNA1-mCherry-mKate2 hybrid | none | obtained from NDL-201 by FLP-removal of kanR marker | L.27.4 | |
NDL-203 | MG1655 (CGSC 6300) | near attTn7::pRNA1-mCherry-mKate2 hybrid. NDL-54 ΔmotA-kanR | none | p1Vir.NDL-54--> NDL-202 | L.27.7 | |
NDL-204 | MG1655 (CGSC 6300) | near attTn7::pRNA1-mCherry-mKate2 hybrid. NDL-54 ΔmotA | none | obtained by FLP removal of kanR marker from NDL-203. NOTE: may still have pCP20. See L.27.8 | L.27.8 | |
NDL-205 | NDL-162 | near attTn7::pRNA1-mCherry-mKate2, ΔmotA, Xie library lon-Venus. See L.29.4 for ID. | none | P1vir.NDL-192--> NDL-162 | L.29.2 | |
NDL-206 | NDL-162 | near attTn7::pRNA1-mCherry-mKate2, ΔmotA, Xie library AtpD-Venus. See L.29.4 for ID. | none | P1vir.NDL-193--> NDL-162 | L.29.2 | |
NDL-207 | NDL-162 | near attTn7::pRNA1-mCherry-mKate2, ΔmotA, Xie library LigA-VenusSee L.29.4 for ID. | none | P1vir.NDL-194--> NDL-162 | L.29.2 | |
NDL-208 | NDL-162 | near attTn7::pRNA1-mCherry-mKate2, ΔmotA, Xie library gapA-Venus. See L.29.4 for ID. | none | P1vir.NDL-195--> NDL-162 | L.29.2 | |
NDL-209 | Xie Library strain | markerless ΔmotA integrated into NDL-192. | none | Wanner integrant. | L.30.4 | |
NDL-210 | Xie Library strain | markerless ΔmotA integrated into NDL-193. | none | Wanner integrant. | L.30.4 | |
NDL-211 | Xie Library strain | markerless ΔmotA integrated into NDL-194. | none | Wanner integrant. | L.30.4 | |
NDL-212 | Xie Library strain | markerless ΔmotA integrated into NDL-195. | none | Wanner integrant. | L.30.4 | |
NDL-237 | BW25113 | CGSC 8590, clpP Keio Knockout | none | From CGSC. | L.34.1 | |
NDL-238 | BW25113 | CGSC 8917, ihfB Keio Knockout | none | From CGSC. | L.34.1 | |
NDL-239 | BW25113 | CGSC 9111, hns Keio Knockout | none | From CGSC. | L.34.1 | |
NDL-240 | BW25113 | CGSC 9441, ihfA Keio Knockout | none | From CGSC. | L.34.1 | |
NDL-241 | BW25113 | CGSC 10954, groL Keio Knockout | none | From CGSC. | L.34.1 | |
NDL-242 | NDL-162 | MG1655 (CGSC7740) near attTn7::pRNA1-mCherry-mkate2 hybrid | none | NDL-162 transduced with P1Vir-NDL-237 | L.34.2 | |
NDL-243 | NDL-162 | MG1655 (CGSC7740) near attTn7::pRNA1-mCherry-mkate2 hybrid | none | NDL-162 transduced with P1Vir-NDL-238 | L.34.2 | |
NDL-244 | NDL-162 | MG1655 (CGSC7740) near attTn7::pRNA1-mCherry-mkate2 hybrid | none | NDL-162 transduced with P1Vir-NDL-239 | L.34.2 | |
NDL-245 | NDL-162 | MG1655 (CGSC7740) near attTn7::pRNA1-mCherry-mkate2 hybrid | none | NDL-162 transduced with P1Vir-NDL-240 | L.34.2 | |
NDL-246 | NDL-162 | MG1655 (CGSC7740) near attTn7::pRNA1-mCherry-mkate2 hybrid | none | NDL-162 transduced with P1Vir-NDL-241 | L.34.2 | |
NDL-247 | NDL-192 | Xie lon reporter (Xie Background), ΔmotA::kanR | none | P1vir.NDL-209 --> NDL192 | L.30.7 | |
NDL-248 | NDL-193 | Xie atpD reporter (Xie Background), ΔmotA::kanR | none | P1vir.NDL-210 --> NDL193 | L.30.7 | |
NDL-249 | NDL-194 | Xie lig reporter (Xie Background), ΔmotA::kanR | none | P1vir.NDL-211 --> NDL194 | L.30.7 | |
NDL-250 | NDL-195 | Xie gapA reporter (Xie Background), ΔmotA::kanR | none | P1vir.NDL-212 --> NDL195 | L.30.7 | |
NDL-254 | TMN1090 | amyE::Pyqxm-CFP (spcR) | none | TMN1090 transduced with amyE::Pyqxm-CFP (spcR) | ||
NDL-255 | TMN985 | Δslr::mls | none | TMN985 transduced with Δslr::mls | ||
NDL-256 | TMN1049 | TMN1049 Δslr::mls | none | TMN1049 transduced with Δslr::mls | ||
NDL-257 | NDL-254 (TMN1090 amyE::Pyqxm-CFP (spcR)) | NDL-254 Δslr::mls | none | NDL-254 transduced with Δslr::mls | ||
NDL-258 | NDL-256 (TMN1049 Δslr::mls ) | NDL-256 hagA233V | none | NDL-256 transduced with hagA233V (phleo) | ||
NDL-259 | NDL-192 | near attTn7::mCherry-mkate2 hybrid specR | none | Wanner integration of constitutive red of NDL-162 | L.31.20 | |
NDL-260 | NDL-194 | near attTn7::mCherry-mkate2 hybrid specR | none | Wanner integration of constitutive red of NDL-162 | L.31.20 | |
NDL-261 | NDL-195 | near attTn7::mCherry-mkate2 hybrid specR | none | Wanner integration of constitutive red of NDL-162 | L.31.20 | |
NDL-262 | TMN1095 | TMN690 + pSpank-sinI (note: sinI - stop codon) | none | Renamed TMN1095. | ||
NDL-263 | TMN1096 | TMN694 + pSpank-sinI (note: sinI - stop codon) | none | Renamed TMN1096. | ||
NDL-264 | TMN1101 | TMN694 + > 2x sinI | none | Renamed TMN1101. | ||
NDL-265 | TMN1111 | TMN694 + 2x sinI | none | Renamed TMN1111. |