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<h3><font style="color:#31B404;">Research</font></h3>
<h3><font style="color:#31B404;">Research</font></h3>


The Pecinka lab is hosted by the [http://www.mpipz.mpg.de/10574/koornneef-dpt Department of Plant Breeding and Genetics] at the [http://www.mpipz.mpg.de/2169/en Max Planck Institute for Plant Breeding Research] in Cologne, Germany.
Pecinka group is hosted by the [http://olomouc.ueb.cas.cz/ Centre of Plant Structural and Functional Genomics], which is part of [http://www.ueb.cas.cz/cs Institute of Experimental Botany of the Czech Academy of Sciences, v. v. i.] in Olomouc, Czech Republic.


 
Our goal is understanding molecular and evolutionary mechanisms shaping plant genomes and epigenomes. We analyze how DNA sequence and chromatin changes are generated by endo- and exogenous factors and how these forces are balanced by the genome repair and epigenetic mechanisms. For our research we use mainly ''Arabidopsis thaliana'' and barley and analyze them by forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods.
Our goal is to understand molecular and evolutionary mechanisms shaping plant genomes and epigenomes. We analyze how DNA sequence and chromatin changes are generated by endo- and exogenous factors and how these forces are balanced by the genome repair and epigenetic mechanisms. To this end we use mainly the model plant ''Arabidopsis thaliana'' and several other ''Brassicaceae'' and analyze them by forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods.
[[Pecinka_lab:Research | read more...]]
[[Pecinka_lab:Research | read more...]]
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*[[Pecinka_lab:Mariana_Diaz|Mariana Andrea Diaz Smoje]]
*[[Pecinka_lab:Mariana_Diaz|Mariana Andrea Diaz Smoje]]
*[[Pecinka_lab:Andreas_Finke|Andreas Finke]]
*[[Pecinka_lab:Andreas_Finke|Andreas Finke]]
*[[Pecinka_lab:Hana Jerabkova|Hana Jeřábková]]
*[[Pecinka_lab:Karin_Kruska|Karin Kruska]]
*[[Pecinka_lab:Kashif Nawaz|Kashif Nawaz]]
*[[Pecinka_lab:Kashif Nawaz|Kashif Nawaz]]
*[[Pecinka_lab:Beata Petrovska|Beáta Petrovská]]
*[[Pecinka_lab:Pranav_Sahu|Pranav Sahu]]
*[[Pecinka_lab:Fen_Yang|Fen Yang]]
*[[Pecinka_lab:Fen_Yang|Fen Yang]]
<h3><font style="color:#4169E1;">Technitians</font></h3>
*[[Pecinka_lab:Barbara_Eilts|Barbara Eilts]]
*[[Pecinka_lab:Petra_Pecinkova|Petra Pecinkova]]


[[Pecinka_lab:People|see complete list...]]
[[Pecinka_lab:People|see complete list...]]
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<h3><font style="color:#FF8C00;">Recent Publications</font></h3>  
<h3><font style="color:#FF8C00;">Recent Publications</font></h3>  


*Baroux C., Pecinka A., Fuchs J., Kreth G., Schubert I., Grossniklaus I (2016): Non-random chromosome arrangement in triploid endosperm nuclei. Chromosoma doi:10.1007/s00412-016-0578-5 [http://link.springer.com/article/10.1007/s00412-016-0578-5 Open access]
*Willing E.M., Piofczyk T., Albert A., Winkler J.B., Schneeberger K., Pecinka A. (2016): UVR2 ensures transgenerational genome stability under simulated natural UV-B in ''Arabidopsis thaliana''. Nature Communications 7:13522. doi: 10.1038/ncomms13522. [http://www.nature.com/articles/ncomms13522 Open access]
*Vu G.T.H., Schmutzer T., Bull F., Cao H.X., Fuchs J., Tran T.D., Jovtchev G., Pistrick K., Stein N., Pecinka A., Neumann P., Novak P., Macas J., Deard P.H., Blattner F.R., Scholz U., Schubert I (2015): Comparative Genome Analysis Reveals Divergent Genome Size Evolution in a Carnivorous Plant Genus. Plant Genome doi:10.3835/plantgenome2015.04.0021 [https://dl.sciencesocieties.org/publications/tpg/articles/0/0/plantgenome2015.04.0021 Open access]  
*Pietzenuk B., Markus C., Gaubert H., Bagwan N., Merotto A., Bucher E., Pecinka A. (2016): Recurrent evolution of heat-responsiveness in Brassicaceae COPIA elements. Genome Biology 17:209 DOI: 10.1186/s13059-016-1072-3 [https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-1072-3 Open access]
*Baroux C., Pecinka A., Fuchs J., Kreth G., Schubert I., Grossniklaus I. (2016): Non-random chromosome arrangement in triploid endosperm nuclei. Chromosoma doi:10.1007/s00412-016-0578-5 [http://link.springer.com/article/10.1007/s00412-016-0578-5 Open access]
*Rawat V., Abdelsamad A., Pietzenuk B., Seymour D.K., Koenig D., Weigel D., Pecinka A., Schneeberger K. (2015): Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data. PLoS One 10(9):e0137391. [http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0137391 Open access]
*Rawat V., Abdelsamad A., Pietzenuk B., Seymour D.K., Koenig D., Weigel D., Pecinka A., Schneeberger K. (2015): Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data. PLoS One 10(9):e0137391. [http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0137391 Open access]
*Cao H.X., Schmutzer T, Scholz U, Pecinka A, Schubert I, Vu G.T.H. (2015): Metatranscriptome analysis reveals host-microbiome interactions in traps of carnivorous Genlisea species. Frontiers in Microbiology doi: 10.3389/fmicb.2015.00526 [http://journal.frontiersin.org/article/10.3389/fmicb.2015.00526/abstract Open access]


*[[Pecinka_lab:Publications|see complete list...]]
*[[Pecinka_lab:Publications|see complete list...]]
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<h3><font style="color:red">News</font></h3>
<h3><font style="color:red">News</font></h3>
*2016-10-11: Transposons and heat stress. Read about evolution of heat responsiveness in ''ONSEN'' and other TEs groups in our latest paper [https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-1072-3 Open access]
*2017-09-01: Two excellent post-docs Beata Petrovska and Hana Jerabkova join the group in Olomouc.
*2016-09-15: Fen Yang joins the lab as new PhD student. Welcome in Cologne!
*2017-09-01: The group moves from MPIPZ to the Centre of Plant Structural and Functional Genomics in Olomouc, Czech Republic.  
*2016-08-30: Priscilla successfully defended her B.Sc. work. Congratulations!
*2017-06-01: Pranav Sahu joins the lab as Marie Curie fellow and will analyze effects of the changing climate on plant performance
*2016-07-27: Anna is going back to her home lab in Poland. We miss her already!
*2017-05-19: Lab visit to the Centre of Plant Structural and Functional Genomics of the Institute of Experimental Botany in Olomouc, Czech Republic - from 1st September 2017 our new home institute!
*2016-07-07: Plant Genome Stability and Change Meeting in Japan started.
*2016-12-01: Fast mutation accumulation under natural UV-B without pyrimidine dimer repair. See more in our new paper [http://www.nature.com/articles/ncomms13522 Open access]
*2016-06-27: Catarine is returning back to her home lab in Brazil after one year in Cologne. We will miss you!  
*2016-06-25: Catarine won a prize for her talk on IWSC in Prague! Big congratulations.  
*2016-05-30: Samira joins our lab for six weeks training.
 
 
 
 
 
 
 
 
   
   


Revision as of 12:00, 5 September 2017


Home      Research      People      Publications      Protocols      Resources      Seminars      Positions      Lab life     


Research

Pecinka group is hosted by the Centre of Plant Structural and Functional Genomics, which is part of Institute of Experimental Botany of the Czech Academy of Sciences, v. v. i. in Olomouc, Czech Republic.

Our goal is understanding molecular and evolutionary mechanisms shaping plant genomes and epigenomes. We analyze how DNA sequence and chromatin changes are generated by endo- and exogenous factors and how these forces are balanced by the genome repair and epigenetic mechanisms. For our research we use mainly Arabidopsis thaliana and barley and analyze them by forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods. read more...

Lab Members

see complete list...



Recent Publications

  • Willing E.M., Piofczyk T., Albert A., Winkler J.B., Schneeberger K., Pecinka A. (2016): UVR2 ensures transgenerational genome stability under simulated natural UV-B in Arabidopsis thaliana. Nature Communications 7:13522. doi: 10.1038/ncomms13522. Open access
  • Pietzenuk B., Markus C., Gaubert H., Bagwan N., Merotto A., Bucher E., Pecinka A. (2016): Recurrent evolution of heat-responsiveness in Brassicaceae COPIA elements. Genome Biology 17:209 DOI: 10.1186/s13059-016-1072-3 Open access
  • Baroux C., Pecinka A., Fuchs J., Kreth G., Schubert I., Grossniklaus I. (2016): Non-random chromosome arrangement in triploid endosperm nuclei. Chromosoma doi:10.1007/s00412-016-0578-5 Open access
  • Rawat V., Abdelsamad A., Pietzenuk B., Seymour D.K., Koenig D., Weigel D., Pecinka A., Schneeberger K. (2015): Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data. PLoS One 10(9):e0137391. Open access

News

  • 2017-09-01: Two excellent post-docs Beata Petrovska and Hana Jerabkova join the group in Olomouc.
  • 2017-09-01: The group moves from MPIPZ to the Centre of Plant Structural and Functional Genomics in Olomouc, Czech Republic.
  • 2017-06-01: Pranav Sahu joins the lab as Marie Curie fellow and will analyze effects of the changing climate on plant performance
  • 2017-05-19: Lab visit to the Centre of Plant Structural and Functional Genomics of the Institute of Experimental Botany in Olomouc, Czech Republic - from 1st September 2017 our new home institute!
  • 2016-12-01: Fast mutation accumulation under natural UV-B without pyrimidine dimer repair. See more in our new paper Open access


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