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<h3><font style="color:#31B404;">Research</font></h3>


<h3><font style="color:#9ACD32;">Research</font></h3>
Pecinka group is hosted by the [http://olomouc.ueb.cas.cz/ Centre of Plant Structural and Functional Genomics], which is part of [http://www.ueb.cas.cz/cs Institute of Experimental Botany of the Czech Academy of Sciences, v. v. i.] in Olomouc, Czech Republic.


The goal of Pecinka lab is to understand molecular basis of mechanisms shaping plant genomes. We focus in particular on DNA repair and inactivation of repetitive DNA that both have potential to cause large genomic chages. To this end we use model species Arabidopsis thaliana and several other Brassicaceae and analyze them using forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods.
Our goal is understanding molecular and evolutionary mechanisms shaping plant genomes and epigenomes. We analyze how DNA sequence and chromatin changes are generated by endo- and exogenous factors and how these forces are balanced by the genome repair and epigenetic mechanisms. For our research we use mainly ''Arabidopsis thaliana'' and barley and analyze them by forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods.
[[Pecinka_lab:Research | read more...]]
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Pecinka lab is hosted by the Department of Plant Breeding and Genetics at the Max Planck Institute for Plant Breeding Research in Cologne, Germany.
<h3><font style="color:#4169E1;">Lab Members</font></h3>
*[[Pecinka_lab:Ales_Pecinka|Ales Pecinka]]


Our wiki site is developed under Openwetware, an open access effort to promote the sharing of information among researchers working in biology.
*[[Pecinka_lab:Hana Jerabkova|Hana Jeřábková]]
*[[Pecinka_lab:Kashif Nawaz|Kashif Nawaz]]
*[[Pecinka_lab:Anna Nowicka|Anna Nowicka]]
*[[Pecinka_lab:Beata Petrovska|Beáta Petrovská]]
*[[Pecinka_lab:Barbara_Piwowarczyk|Barbara Piwowarczyk]]
*[[Pecinka_lab:Pranav_Sahu|Pranav Sahu]]
*[[Pecinka_lab:Fen_Yang|Fen Yang]]


[[Pecinka_Lab:Research | read more...]]


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[[Pecinka_lab:People|see complete list...]]


<h3><font style="color:#4169E1;">Lab Members</font></h3>


*[[Pecinka_Lab:Ahmed_Abdelsamad|Ahmed Abdelsamad]]
*[[Pecinka_Lab:Chun Hsin Liu|Chun Hsin Liu (Phoebe)]]
*[[Pecinka_Lab:Ales_Pecinka|Ales Pecinka]]
*[[Pecinka_Lab:Björn_Pietzenuk|Björn Pietzenuk]]
*[[Pecinka_Lab:Thomas_Piofczyk|Thomas Piofczyk]]
*[[Pecinka_Lab:Giang Vu|Giang Vu]]


<h3><font style="color:#4169E1;">Visiting Students</font></h3>
*[[Pecinka_Lab:Pawel_Mikulski|Pawel Mikulski]]
*[[Pecinka_Lab:Miriam_Schleinitz|Miriam Schleinitz]]


<h3><font style="color:#4169E1;">Technitians</font></h3>
*[[Pecinka_Lab:Barbara_Eilts|Barbara_Eilts]]
*[[Pecinka_Lab:Petra_Pecinkova|Petra Pecinkova]]


<h3><font style="color:#4169E1;">Alumni</font></h3>
|-
*[[Pecinka_Lab:Alexander Schott|Alexander Schott]]
|  
*[[Pecinka_Lab:Anastasia Hoffmann|Anastasia Hoffmann]]
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[[Pecinka_Lab:Alumni|See all former members...]]
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<h3><font style="color:#FF8C00;">Recent Publications</font></h3>  
<h3><font style="color:#FF8C00;">Recent Publications</font></h3>  
*Diaz, M., Pecinka, A. (2018): Scaffolding for Repair: Understanding Molecular Functions of the SMC5/6 Complex. Genes 9:E36. doi: 10.3390/genes9010036. [http://www.mdpi.com/2073-4425/9/1/36 Open access]
*Diaz, M., Pecinka, A. (2017): Seeds as emerging hotspot for maintenance of genome stability. Cytologia 82:467-470.
*van Esse G.W., Walla A., Finke A., Koornneef M., Pecinka A., von Korff M. (2017): Six-Rowed Spike3 (VRS3) Is a Histone Demethylase That Controls Lateral Spikelet Development in Barley. Plant Physiology 174:2397-2408. doi: 10.1104/pp.17.00108. [http://www.plantphysiol.org/content/174/4/2397 Full text]
*Baroux C., Pecinka A., Fuchs J., Kreth G., Schubert I., Grossniklaus I (2017): Non-random chromosome arrangement in triploid endosperm nuclei. Chromosoma 126:115-124 [http://link.springer.com/article/10.1007%2Fs00412-016-0578-5 Open access]


*Pecinka A, Mittelsten Scheid O (2012): Stress-induced chromatin changes: A critical view on their heritability. Plant Cell Physiology doi: 10.1093/pcp/pcs044. [http://pcp.oxfordjournals.org/content/early/2012/03/28/pcp.pcs044.abstract]
*Alcázar R, Pecinka A, Aarts MGM, Fransz PF, Koornneef M (2012): Signals of speciation within Arabidopsis thaliana in comparison with its relatives. Curr Opin Plant Biol 15:205-211. [http://www.sciencedirect.com/science/article/pii/S1369526612000039]
*Pecinka A, Fang W, Rehmsmeier M, Levy AA, Mittelsten Scheid O (2011): Polyploidization increases meiotic recombination frequency in Arabidopsis. BMC Biology 9:24. [http://www.biomedcentral.com/1741-7007/9/24]
*Pecinka A, Dinh HQ, Rosa M, Baubec T, Lettner N, Mittelsten Scheid O (2010): Epigenetic control of repetitive elements is attenuated by prolonged heat stress in Arabidopsis. Plant Cell 22: 3118–3129. [http://www.plantcell.org/content/22/9/3118.full]
*Pecinka A, Rosa M, Schikora A, Berlinger M, Hirt H, Luschnig C, Mittelsten Scheid O (2009): Transgenerational stress memory is not a general response in Arabidopsis. PLoS One 4:e5202. [http://www.plosone.org/article/info:doi/10.1371/journal.pone.0005202]


*[[Pecinka_Lab:Publications|see complete list...]]


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*[[Pecinka_lab:Publications|see complete list...]]


<h3><font style="color:#F8B603;">Announcements</font></h3>
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*[[Pecinka_Lab:Group_meeting|Group meeting, journal clubs, and seminars]]
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<h3><font style="color:red">News</font></h3>
<h3><font style="color:red">News</font></h3>
*2012-06-07: Pecinka lab page runs on OpenWetWare
 
*[XXXXXXXXXXXXXXXXXXXXX]
*2018-04-15: Two PhD positions in seed development in barley (read more [[media:Pecinka_PhD_seed.pdf| PDF]]) and in understanding chromosome and chromatin organization in Arabidopsis and barley (full information [[media:Pecinka_IEB_chromosomes.pdf| PDF]])! In case of your interest please send your application to Ales Pecinka (pecinka@ueb.cas.cz).
*[Xxxxxxxxxxxxxxxxxxx]
*2018-03-05: Barbara Piwowarzkyk from University of Krakow joins our group as visiting scientist.
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*2018-02-01: Pranav moves from MPIPZ Cologne to IEB Olomouc. Second Marie Curie fellowship for the institute. Wellcome, Pranav.
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*2018-01-12: SMC5/6 complex, more than just DNA damage repair. Read our review! [http://www.mdpi.com/2073-4425/9/1/36 Open access].  
[http://www4.clustrmaps.com/user/60a714c2 http://www4.clustrmaps.com/stats/maps-no_clusters/pecinkalab.openwetware.org--thumb.jpg]
 
 
 
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Latest revision as of 13:29, 15 April 2018


Home      Research      People      Publications      Protocols      Resources      Seminars      Positions      Lab life     


Research

Pecinka group is hosted by the Centre of Plant Structural and Functional Genomics, which is part of Institute of Experimental Botany of the Czech Academy of Sciences, v. v. i. in Olomouc, Czech Republic.

Our goal is understanding molecular and evolutionary mechanisms shaping plant genomes and epigenomes. We analyze how DNA sequence and chromatin changes are generated by endo- and exogenous factors and how these forces are balanced by the genome repair and epigenetic mechanisms. For our research we use mainly Arabidopsis thaliana and barley and analyze them by forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods. read more...

Lab Members


see complete list...



Recent Publications

  • Diaz, M., Pecinka, A. (2018): Scaffolding for Repair: Understanding Molecular Functions of the SMC5/6 Complex. Genes 9:E36. doi: 10.3390/genes9010036. Open access
  • Diaz, M., Pecinka, A. (2017): Seeds as emerging hotspot for maintenance of genome stability. Cytologia 82:467-470.
  • van Esse G.W., Walla A., Finke A., Koornneef M., Pecinka A., von Korff M. (2017): Six-Rowed Spike3 (VRS3) Is a Histone Demethylase That Controls Lateral Spikelet Development in Barley. Plant Physiology 174:2397-2408. doi: 10.1104/pp.17.00108. Full text
  • Baroux C., Pecinka A., Fuchs J., Kreth G., Schubert I., Grossniklaus I (2017): Non-random chromosome arrangement in triploid endosperm nuclei. Chromosoma 126:115-124 Open access

News

  • 2018-04-15: Two PhD positions in seed development in barley (read more PDF) and in understanding chromosome and chromatin organization in Arabidopsis and barley (full information PDF)! In case of your interest please send your application to Ales Pecinka (pecinka@ueb.cas.cz).
  • 2018-03-05: Barbara Piwowarzkyk from University of Krakow joins our group as visiting scientist.
  • 2018-02-01: Pranav moves from MPIPZ Cologne to IEB Olomouc. Second Marie Curie fellowship for the institute. Wellcome, Pranav.
  • 2018-01-12: SMC5/6 complex, more than just DNA damage repair. Read our review! Open access.



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