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{{Template:Pecinka Lab}}
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<h3><font style="color:#31B404;">Research</font></h3>
<h3><font style="color:#31B404;">Research</font></h3>
The goal of the Pecinka lab is to understand molecular mechanisms shaping plant genomes. To this end we use the model plant ''Arabidopsis thaliana'' and several other ''Brassicaceae'' and analyze them by using forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods.


Pecinka lab is hosted by the [http://www.mpipz.mpg.de/10574/koornneef-dpt Department of Plant Breeding and Genetics] at the [http://www.mpipz.mpg.de/2169/en Max Planck Institute for Plant Breeding Research] in Cologne, Germany.
Pecinka group is hosted by the [http://olomouc.ueb.cas.cz/ Centre of Plant Structural and Functional Genomics], which is part of [http://www.ueb.cas.cz/cs Institute of Experimental Botany of the Czech Academy of Sciences, v. v. i.] in Olomouc, Czech Republic.
 
Our wiki site was developed under [http://openwetware.org/wiki/Main_Page OpenWetWare], an open access effort to promote sharing of information among biologists.


Our goal is understanding molecular and evolutionary mechanisms shaping plant genomes and epigenomes. We analyze how DNA sequence and chromatin changes are generated by endo- and exogenous factors and how these forces are balanced by the genome repair and epigenetic mechanisms. For our research we use mainly ''Arabidopsis thaliana'' and barley and analyze them by forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods.
[[Pecinka_lab:Research | read more...]]
[[Pecinka_lab:Research | read more...]]
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<h3><font style="color:#4169E1;">Lab Members</font></h3>
<h3><font style="color:#4169E1;">Lab Members</font></h3>
*[[Pecinka_lab:Ahmed_Abdelsamad|Ahmed Abdelsamad]]
*[[Pecinka_lab:Chun Hsin Liu|Chun Hsin Liu (Phoebe)]]
*[[Pecinka_lab:Ales_Pecinka|Ales Pecinka]]
*[[Pecinka_lab:Ales_Pecinka|Ales Pecinka]]
*[[Pecinka_lab:Bjoern_Pietzenuk|Björn Pietzenuk]]
*[[Pecinka_lab:Thomas_Piofczyk|Thomas Piofczyk]]
*[[Pecinka_lab:Giang Vu|Giang Vu]]


<h3><font style="color:#4169E1;">Visiting Students</font></h3>
*[[Pecinka_lab:Hana Jerabkova|Hana Jeřábková]]
*[[Pecinka_lab:Pawel_Mikulski|Pawel Mikulski]]
*[[Pecinka_lab:Kashif Nawaz|Kashif Nawaz]]
*[[Pecinka_lab:Miriam_Schleinitz|Miriam Schleinitz]]
*[[Pecinka_lab:Anna Nowicka|Anna Nowicka]]
*[[Pecinka_lab:Beata Petrovska|Beáta Petrovská]]
*[[Pecinka_lab:Barbara_Piwowarczyk|Barbara Piwowarczyk]]
*[[Pecinka_lab:Pranav_Sahu|Pranav Sahu]]
*[[Pecinka_lab:Fen_Yang|Fen Yang]]


<h3><font style="color:#4169E1;">Technitians</font></h3>
*[[Pecinka_lab:Barbara_Eilts|Barbara_Eilts]]
*[[Pecinka_lab:Petra_Pecinkova|Petra Pecinkova]]


[[Pecinka_lab:People|see complete list...]]


[[Pecinka_lab:People|see complete list...]]






[http://www4.clustrmaps.com/user/efef92c9 http://www4.clustrmaps.com/stats/maps-no_clusters/openwetware.org-wiki-Pecinka_Lab-thumb.jpg]


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<h3><font style="color:#FF8C00;">Recent Publications</font></h3>  
<h3><font style="color:#FF8C00;">Recent Publications</font></h3>  
*Diaz, M., Pecinka, A. (2018): Scaffolding for Repair: Understanding Molecular Functions of the SMC5/6 Complex. Genes 9:E36. doi: 10.3390/genes9010036. [http://www.mdpi.com/2073-4425/9/1/36 Open access]
*Diaz, M., Pecinka, A. (2017): Seeds as emerging hotspot for maintenance of genome stability. Cytologia 82:467-470.
*van Esse G.W., Walla A., Finke A., Koornneef M., Pecinka A., von Korff M. (2017): Six-Rowed Spike3 (VRS3) Is a Histone Demethylase That Controls Lateral Spikelet Development in Barley. Plant Physiology 174:2397-2408. doi: 10.1104/pp.17.00108. [http://www.plantphysiol.org/content/174/4/2397 Full text]
*Baroux C., Pecinka A., Fuchs J., Kreth G., Schubert I., Grossniklaus I (2017): Non-random chromosome arrangement in triploid endosperm nuclei. Chromosoma 126:115-124 [http://link.springer.com/article/10.1007%2Fs00412-016-0578-5 Open access]


*Pecinka A, Mittelsten Scheid O. Stress-induced chromatin changes: A critical view on their heritability. Plant Cell Physiology doi: 10.1093/pcp/pcs044 (2012). [http://pcp.oxfordjournals.org/content/early/2012/03/28/pcp.pcs044.abstract]
*Alcázar R, Pecinka A, Aarts MGM, Fransz PF, Koornneef M. Signals of speciation within Arabidopsis thaliana in comparison with its relatives. Curr Opin Plant Biol 15:205-211 (2012). [http://www.sciencedirect.com/science/article/pii/S1369526612000039]
*Pecinka A, Fang W, Rehmsmeier M, Levy AA, Mittelsten Scheid O. Polyploidization increases meiotic recombination frequency in Arabidopsis. BMC Biology 9:24 (2011). [http://www.biomedcentral.com/1741-7007/9/24]
*Pecinka A, Dinh HQ, Rosa M, Baubec T, Lettner N, Mittelsten Scheid O. Epigenetic control of repetitive elements is attenuated by prolonged heat stress in Arabidopsis. Plant Cell 22: 3118–3129 (2010). [http://www.plantcell.org/content/22/9/3118.full]


*[[Pecinka_lab:Publications|see complete list...]]
*[[Pecinka_lab:Publications|see complete list...]]
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<h3><font style="color:#F8B603;">Seminars</font></h3>
<h3><font style="color:red">News</font></h3>
*[[Pecinka_lab:Group_meeting| Meetings, journal clubs, seminars]]
 
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*2018-04-15: Two PhD positions in seed development in barley (read more [[media:Pecinka_PhD_seed.pdf| PDF]]) and in understanding chromosome and chromatin organization in Arabidopsis and barley (full information [[media:Pecinka_IEB_chromosomes.pdf| PDF]])! In case of your interest please send your application to Ales Pecinka (pecinka@ueb.cas.cz).
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*2018-03-05: Barbara Piwowarzkyk from University of Krakow joins our group as visiting scientist.
*2018-02-01: Pranav moves from MPIPZ Cologne to IEB Olomouc. Second Marie Curie fellowship for the institute. Wellcome, Pranav.
*2018-01-12: SMC5/6 complex, more than just DNA damage repair. Read our review! [http://www.mdpi.com/2073-4425/9/1/36 Open access].
 


<h3><font style="color:red">News</font></h3>
*2012-03-28: The review on Stress-Induced Chromatin Changes was published in PCP [http://pcp.oxfordjournals.org/content/early/2012/03/28/pcp.pcs044.abstract]
*2012-01: The review by Alcazar et al. on Signals of speciation in Arabidopsis and its relatives was published in COPB [http://www.sciencedirect.com/science/article/pii/S1369526612000039]
*2011-09: Grant on Epigenetic Control of Repetitive DNA in ''Arabidopsis lyrata'' funded by DFG


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Latest revision as of 13:29, 15 April 2018


Home      Research      People      Publications      Protocols      Resources      Seminars      Positions      Lab life     


Research

Pecinka group is hosted by the Centre of Plant Structural and Functional Genomics, which is part of Institute of Experimental Botany of the Czech Academy of Sciences, v. v. i. in Olomouc, Czech Republic.

Our goal is understanding molecular and evolutionary mechanisms shaping plant genomes and epigenomes. We analyze how DNA sequence and chromatin changes are generated by endo- and exogenous factors and how these forces are balanced by the genome repair and epigenetic mechanisms. For our research we use mainly Arabidopsis thaliana and barley and analyze them by forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods. read more...

Lab Members


see complete list...



Recent Publications

  • Diaz, M., Pecinka, A. (2018): Scaffolding for Repair: Understanding Molecular Functions of the SMC5/6 Complex. Genes 9:E36. doi: 10.3390/genes9010036. Open access
  • Diaz, M., Pecinka, A. (2017): Seeds as emerging hotspot for maintenance of genome stability. Cytologia 82:467-470.
  • van Esse G.W., Walla A., Finke A., Koornneef M., Pecinka A., von Korff M. (2017): Six-Rowed Spike3 (VRS3) Is a Histone Demethylase That Controls Lateral Spikelet Development in Barley. Plant Physiology 174:2397-2408. doi: 10.1104/pp.17.00108. Full text
  • Baroux C., Pecinka A., Fuchs J., Kreth G., Schubert I., Grossniklaus I (2017): Non-random chromosome arrangement in triploid endosperm nuclei. Chromosoma 126:115-124 Open access

News

  • 2018-04-15: Two PhD positions in seed development in barley (read more PDF) and in understanding chromosome and chromatin organization in Arabidopsis and barley (full information PDF)! In case of your interest please send your application to Ales Pecinka (pecinka@ueb.cas.cz).
  • 2018-03-05: Barbara Piwowarzkyk from University of Krakow joins our group as visiting scientist.
  • 2018-02-01: Pranav moves from MPIPZ Cologne to IEB Olomouc. Second Marie Curie fellowship for the institute. Wellcome, Pranav.
  • 2018-01-12: SMC5/6 complex, more than just DNA damage repair. Read our review! Open access.



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