Prince:Intro to Mass Spectrometry Proteomics: Difference between revisions
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* Matlab has a series of tutorials that are useful ('''>>doc help''' then search for '''Mass Spectrometry''') | * Matlab has a series of tutorials that are useful ('''>>doc help''' then search for '''Mass Spectrometry''') | ||
=== | ===Misc=== | ||
* [http://www.ncbi.nlm.nih.gov/pubmed/17031796 Comments on standards in proteomics and the concept of fitness-for-purpose] - includes discussion of hypothesis driven and exploratory research. | |||
===Statistics of Quantitative Proteomics=== | |||
* [http://www.ncbi.nlm.nih.gov/pubmed/17893850 Design and analysis issues in quantitative proteomics studies] Simple discussion of things like 'power', 'effect size' and multiple hypothesis testing. | |||
===Hype=== | |||
* Yates, Ruse, and Nakorchevsky ([http://www.annualreviews.org/doi/abs/10.1146/annurev-bioeng-061008-124934 see review above]) | * Yates, Ruse, and Nakorchevsky ([http://www.annualreviews.org/doi/abs/10.1146/annurev-bioeng-061008-124934 see review above]) | ||
"Mass spectrometry (MS) is the most comprehensive and versatile tool in large-scale proteomics" | "Mass spectrometry (MS) is the most comprehensive and versatile tool in large-scale proteomics" | ||
* [http://archive.sciencewatch.com/march-april2007/sw_march-april2007_page3.htm Interview with Matthias Mann] (2007) | * [http://archive.sciencewatch.com/march-april2007/sw_march-april2007_page3.htm Interview with Matthias Mann] (2007) | ||
* [http://www.annualreviews.org/doi/abs/10.1146/annurev-bioeng-061008-124934 Can Proteomics Retire the Western Blot?] (commentary by M. Mann) | * [http://www.annualreviews.org/doi/abs/10.1146/annurev-bioeng-061008-124934 Can Proteomics Retire the Western Blot?] (commentary by M. Mann) | ||
Latest revision as of 12:37, 8 July 2013
Here are some introductory resources to the field of Mass Spectrometry Proteomics. Add more as you come across them.
- Mass spectrometry–based proteomics in cell biology - review by Walther & Mann
- Proteome Bioinformatics - book published in 2010, free pdfs available [BYU subscription].
- Bioinformatics for Comparative Proteomics - book published in 2010, free pdfs available [BYU subscription].
- Bioinformatics for Qualitative and Quantitative Proteomics (chapter 15 of Bioinformatics for Omics Data)
- Proteomics by Mass Spectrometry: Approaches, Advances, and Applications (Yates, Ruse, and Nakorchevsky)
- Vitek and Kall overview of computation mass spec proteomics
- Matlab has a series of tutorials that are useful (>>doc help then search for Mass Spectrometry)
Misc
- Comments on standards in proteomics and the concept of fitness-for-purpose - includes discussion of hypothesis driven and exploratory research.
Statistics of Quantitative Proteomics
- Design and analysis issues in quantitative proteomics studies Simple discussion of things like 'power', 'effect size' and multiple hypothesis testing.
Hype
- Yates, Ruse, and Nakorchevsky (see review above)
"Mass spectrometry (MS) is the most comprehensive and versatile tool in large-scale proteomics"
- Interview with Matthias Mann (2007)
- Can Proteomics Retire the Western Blot? (commentary by M. Mann)
