Prince:Open Computing Projects: Difference between revisions
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{{PrinceLab}} | {{PrinceLab}} | ||
Have an interesting project idea? Something that would help your work? List it here. If you are working on one of these put your name by it so others can talk to you about it. | |||
==General== | ==General== | ||
* Develop a wiki that uses markdown for the front-end and git (preferably abstracted) for the backend. | * Develop a wiki that uses markdown for the front-end and git (preferably abstracted) for the backend. | ||
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==Numeric Computing== | ==Numeric Computing== | ||
* Figure out how to manipulate [http://narray.rubyforge.org/ NArray] objects from within Inline. | * Figure out how to manipulate [http://narray.rubyforge.org/ NArray] objects from within Inline. | ||
* Create a tutorial for [http://narray.rubyforge.org/ NArray] based on [http://narray.rubyforge.org/SPEC.en the methods page] | * Create a tutorial for [http://narray.rubyforge.org/ NArray] based on [http://narray.rubyforge.org/SPEC.en the methods page] [John P. - I have a start on this] | ||
* Create a [http://numpy.scipy.org/ NumPy] equivalency document showing how to do things in [http://narray.rubyforge.org/ NArray] and NumPy. | * Create a [http://numpy.scipy.org/ NumPy] equivalency document showing how to do things in [http://narray.rubyforge.org/ NArray] and NumPy. | ||
** This could be based on the NumPy [http://docs.scipy.org/doc/numpy/user/ User Guide] and/or [http://docs.scipy.org/doc/numpy/reference/index.html#reference Reference] | ** This could be based on the NumPy [http://docs.scipy.org/doc/numpy/user/ User Guide] and/or [http://docs.scipy.org/doc/numpy/reference/index.html#reference Reference] | ||
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[[Image:LGL_zoom2_thumbnail.jpeg]] | [[Image:LGL_zoom2_thumbnail.jpeg]] | ||
[[Image:LGL_zoom3_thumbnail.jpeg]] | [[Image:LGL_zoom3_thumbnail.jpeg]] | ||
* Create a dynamic visualization tool (in 2D or 3D) that allows a user to get more information about each of the MS/MS hits in a file. For instance, [http://tools.proteomecenter.org/wiki/index.php?title=Software:Pep3D pep3D] gives a birds eye view of the peptide hits, but we'd like to be able to interrogate each of the hits (i.e., bring up a mascot like view of the hit). | |||
Revision as of 09:03, 15 April 2010
Have an interesting project idea? Something that would help your work? List it here. If you are working on one of these put your name by it so others can talk to you about it.
General
- Develop a wiki that uses markdown for the front-end and git (preferably abstracted) for the backend.
- Should be extremely easy to use, organize, clone, share, etc.
- File structure should be easily navigable within the repository and on the web interface.
Numeric Computing
- Figure out how to manipulate NArray objects from within Inline.
- Create a tutorial for NArray based on the methods page [John P. - I have a start on this]
- Create a NumPy equivalency document showing how to do things in NArray and NumPy.
- This could be based on the NumPy User Guide and/or Reference
- Extend NArray as necessary so that all useful functionality of NumPy is duplicated in NArray or separate gems.
Visualization
- Get LGL (sourceforge page) working again standalone, or get it working as a plugin for cytoscape. LGL creates very beautiful 2D layouts of networks:
- Create a dynamic visualization tool (in 2D or 3D) that allows a user to get more information about each of the MS/MS hits in a file. For instance, pep3D gives a birds eye view of the peptide hits, but we'd like to be able to interrogate each of the hits (i.e., bring up a mascot like view of the hit).
