Proportal: Difference between revisions
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=Strain Discussion= | =Strain Discussion= | ||
This section is devoted to the discussion on issues related to [[Proportal_Strains | various strains]] stored in Proportal DB. | This section is devoted to the discussion on issues related to [[Proportal_Strains | various strains]] stored in Proportal DB. | ||
=Frequently Asked Questions= | |||
This section provides answers to some [[Proportal_FAQs | frequently asked questions]]. | |||
Revision as of 11:55, 27 September 2011
| HOME -- | SEQUENCING -- | LIBRARY PREP -- | HIGH-THROUGHPUT -- | COMPUTING -- | OTHER TECHNOLOGY |
The information provided here is for the general purpose of user contribution and especially collaboration. While the lab members may have access to their internal secure wiki's, however, people will benefit from sharing the information and maintaining a collaborative environment for sustainable development.
ProPortal Prochlorococcus Portal is a web analytical tool for Prochlorococcus, a model system for Integrative Systems Biology.
References
- Proportal Wiki
- Chisholm Lab Bioinformatics Wiki: You need login to get access.
- Marine Phage, Viruses and Viromes The Gordon & Betty Moore Foundation's Marine Microbiology Initiative (MMI) at Broad institute.
Project Management
| Timelines | Plan | Status | Comments |
|---|---|---|---|
| Jul 22, 2011 | Modification of Proportal DB Schema. Re-create all tables in a new database with all the missing foreign keys and their cascade properties. | The new Proportal DB Schema has been created by adding all missing foreign keys in the current version. A number of errors are to be fixed in next week to synchronize the datasets stored in the development and production databases. | Add your comments |
| Jul 29, 2011 | Update of datasets in Proportal public website. Migrate/merge all datasets stored in the development and production databases. Verify the integrity and consistency between the development and production databases and websites. | Refer to the Release Notes for a number of issues resolved. | Add your comments |
| Aug 5, 2011 | Modification of cluster analysis using static/manual processing. | Refer to the Release Notes for a number of issues resolved. | Add your comments |
| Aug 15, 2011 | Due date for submitting the database paper | Refer to the To-do List for a number of issues that should be addressed before the submission. Finally, the manuscirpt was submitted on time! | Add your comments |
| Aug 31, 2011 | The GIT repository for version control and the wiki server for Proportal helps, user feedback, and data uploading etc. | Refer to the Release Notes for a number of issues resolved. | Add your comments |
| Oct 31, 2011 | Automation of cluster analysis using dynamic processing and network visualization. | Refer to the Release Notes for a number of issues resolved. | Add your comments |
To-do List
For the detail of current issues that have been identified, refer to the To-do List.
Proportal DB Schema
The new Proportal DB Schema is created by adding all the missing foreign keys back into the database. Some orphan records have been identified from this process and will be fixed/removed from next release of Proportal.
Release Notes
Some issues in the current version of Proportal have been resolved. Refer to the Release Notes for more details.
Strain Discussion
This section is devoted to the discussion on issues related to various strains stored in Proportal DB.
Frequently Asked Questions
This section provides answers to some frequently asked questions.
