Protein-protein interaction databases

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| database of experimental and predicted interactions
| database of experimental and predicted interactions
| http://string-db.org/
| http://string-db.org/
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|-
 +
| [[Protein-protein interaction databases#IntAct|IntAct]]
 +
| interactions derived from literature curation or direct user submissions
 +
| http://www.ebi.ac.uk/intact/
|-
|-
| MIPS [[Image:0stars.png]]
| MIPS [[Image:0stars.png]]

Revision as of 03:37, 23 September 2011

Name Description Link
String Image:3stars.png database of experimental and predicted interactions http://string-db.org/
IntAct interactions derived from literature curation or direct user submissions http://www.ebi.ac.uk/intact/
MIPS Image:0stars.png Mammalian Protein-Protein Interaction Database (didn't work when tested in Sept '11) http://mips.helmholtz-muenchen.de/proj/ppi/
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String

  • collects evidence from genomic Context, high-throughput experiments, conserved coexpression, and text mining
  • easy to learn how to use, great graphical interaction map, detailed explanation of evidence
  • created by CPR, EMBL, SIB, KU, TUD, and UZH
  • latest references: [1], [2]


See also

On OpenWetWare

  • The Prince lab present on OWW works on protein-protein interactions.
  • OWW's Keating lab also works on protein-protein interactions.

Related literature searches

  • search PubMed for MeSH term Protein Interaction Mapping [3], major topic [4], and reviews only [5]

Recent reviews:

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