Protein-protein interaction databases
From OpenWetWare
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(overview table) |
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| database of experimental and predicted interactions | | database of experimental and predicted interactions | ||
| http://string-db.org/ | | http://string-db.org/ | ||
| + | |- | ||
| + | | [[Protein-protein interaction databases#IntAct|IntAct]] | ||
| + | | interactions derived from literature curation or direct user submissions | ||
| + | | http://www.ebi.ac.uk/intact/ | ||
|- | |- | ||
| MIPS [[Image:0stars.png]] | | MIPS [[Image:0stars.png]] | ||
Revision as of 04:37, 23 September 2011
| Name | Description | Link |
|---|---|---|
String 
| database of experimental and predicted interactions | http://string-db.org/ |
| IntAct | interactions derived from literature curation or direct user submissions | http://www.ebi.ac.uk/intact/ |
MIPS 
| Mammalian Protein-Protein Interaction Database (didn't work when tested in Sept '11) | http://mips.helmholtz-muenchen.de/proj/ppi/ |
| cell 1 | cell 2 | cell 3 |
| cell 1 | cell 2 | cell 3 |
| cell 1 | cell 2 | cell 3 |
String
- collects evidence from genomic Context, high-throughput experiments, conserved coexpression, and text mining
- easy to learn how to use, great graphical interaction map, detailed explanation of evidence
- created by CPR, EMBL, SIB, KU, TUD, and UZH
- latest references: [1], [2]
See also
On OpenWetWare
- The Prince lab present on OWW works on protein-protein interactions.
- OWW's Keating lab also works on protein-protein interactions.
Related literature searches
Recent reviews:
