Protein-protein interaction databases

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* created by CPR, EMBL, SIB, KU, TUD, and UZH
* created by CPR, EMBL, SIB, KU, TUD, and UZH
* latest references: [http://www.ncbi.nlm.nih.gov/pubmed/21045058], [http://www.ncbi.nlm.nih.gov/pubmed/18940858]
* latest references: [http://www.ncbi.nlm.nih.gov/pubmed/21045058], [http://www.ncbi.nlm.nih.gov/pubmed/18940858]
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== [http://www.ebi.ac.uk/intact/ IntAct] ==
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Revision as of 04:38, 23 September 2011

Name Description Link
String Image:3stars.png database of experimental and predicted interactions http://string-db.org/
IntAct interactions derived from literature curation or direct user submissions http://www.ebi.ac.uk/intact/
MIPS Image:0stars.png Mammalian Protein-Protein Interaction Database (didn't work when tested in Sept '11) http://mips.helmholtz-muenchen.de/proj/ppi/
cell 1 cell 2 cell 3
cell 1 cell 2 cell 3
cell 1 cell 2 cell 3

String

  • collects evidence from genomic Context, high-throughput experiments, conserved coexpression, and text mining
  • easy to learn how to use, great graphical interaction map, detailed explanation of evidence
  • created by CPR, EMBL, SIB, KU, TUD, and UZH
  • latest references: [1], [2]


IntAct


See also

On OpenWetWare

  • The Prince lab present on OWW works on protein-protein interactions.
  • OWW's Keating lab also works on protein-protein interactions.

Related literature searches

  • search PubMed for MeSH term Protein Interaction Mapping [3], major topic [4], and reviews only [5]

Recent reviews:

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