Protein-protein interaction databases: Difference between revisions
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* created by CPR, EMBL, SIB, KU, TUD, and UZH | * created by CPR, EMBL, SIB, KU, TUD, and UZH | ||
* latest references: [http://www.ncbi.nlm.nih.gov/pubmed/21045058], [http://www.ncbi.nlm.nih.gov/pubmed/18940858] | * latest references: [http://www.ncbi.nlm.nih.gov/pubmed/21045058], [http://www.ncbi.nlm.nih.gov/pubmed/18940858] | ||
== [http://www.ebi.ac.uk/intact/ IntAct] == | |||
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Revision as of 01:38, 23 September 2011
Name | Description | Link |
---|---|---|
String | database of experimental and predicted interactions | http://string-db.org/ |
IntAct | interactions derived from literature curation or direct user submissions | http://www.ebi.ac.uk/intact/ |
MIPS | Mammalian Protein-Protein Interaction Database (didn't work when tested in Sept '11) | http://mips.helmholtz-muenchen.de/proj/ppi/ |
cell 1 | cell 2 | cell 3 |
cell 1 | cell 2 | cell 3 |
cell 1 | cell 2 | cell 3 |
String
- collects evidence from genomic Context, high-throughput experiments, conserved coexpression, and text mining
- easy to learn how to use, great graphical interaction map, detailed explanation of evidence
- created by CPR, EMBL, SIB, KU, TUD, and UZH
- latest references: [1], [2]
IntAct
See also
On OpenWetWare
- The Prince lab present on OWW works on protein-protein interactions.
- OWW's Keating lab also works on protein-protein interactions.
Related literature searches
Recent reviews: