Protocols: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
No edit summary
(alphabetization and left aligned text in tables (justify algorithm doesn't work so good))
Line 4: Line 4:
|- valign="top"
|- valign="top"
|width=247px class="MainPageBG" style="border: 0px solid #CCCCCC; color: #000; background-color: #CCCCCC"|
|width=247px class="MainPageBG" style="border: 0px solid #CCCCCC; color: #000; background-color: #CCCCCC"|
<div style="padding: .4em .9em .9em">
<div style="text-align: left; padding: .4em .9em .9em">


==''In vivo''==
==''In vivo''==
===''Escherichia coli''===
===''Escherichia coli''===
*[[Bacterial cell culture]]
*[[Bacterial Transformation]]
**[[Preparing chemically competent cells|Preparing chemically competent cells]]
**[[Transforming chemically competent cells|Transforming chemically competent cells]]
**[[Electrocompetent cells|Preparing electrocompetent cells]]
**[[Electroporation|Transforming electrocompetent cells]]
*[[beta-Galactosidase Assay (A better Miller)]]
*[[beta-Galactosidase Assay (A better Miller)]]
*[[Bacterial cell culture]]
*[[Colony PCR]]
*[[Bacterial Transformation]]<br>-Overview of transformation protocols
*[[Preparing chemically competent cells]]
*[[Transforming chemically competent cells]]
*[[Electrocompetent cells]]
*[[Electroporation]]
*[[Miniprep]]
*[[Miniprep]]
*[[Colony PCR]]
*[[Sauer:P1vir phage transduction|P1vir phage transduction]]
*[[Pour plates|Pour LB plates]]
*[http://www.cf.ac.uk/biosi/staff/ehrmann/tools/factors.htm Protein expression resource]
*[[Pulse-chase protein production]]
*[[Pulse-chase protein production]]
*[[Pour plates|Pour LB plates]]
*[[S_N Chemostat Protocol]]
*[[S_N Chemostat Protocol]]
*[[Sauer:P1vir phage transduction|P1vir phage transduction]]
 
*[http://www.cf.ac.uk/biosi/staff/ehrmann/tools/factors.htm Protein expression resource]
 


===''Mesoplasma florum''===
===''Mesoplasma florum''===
*[[Mesoplama florum:Culture media|Preparing culture media]]
*[[Mesoplama florum:Culture media|Preparing culture media]]
===T7===
===T7===
*[[Cesium Chloride Purification of T7]]
*[[Studier Lysate Prep|Simple lysate protocol from plaque or lysate]]
*[[Studier Lysate Prep|Simple lysate protocol from plaque or lysate]]
*[[Cesium Chloride Purification of T7]]
===Yeast===
===Yeast===
*[[Assaying mating]]
*[[B-galactosidase assay]]
*[[Cell Cycle Arrest]]
*[[Dropout plates for yeast]]
*[[Fixing cells]]
*[[High Efficiency Transformation]]
*[[High Efficiency Transformation]]
*[[Layered plates]]
*[[Pour YPD plates]]
*[[Silver: Lysate for Western|Simple Yeast Lysate]] (for Western etc.)
*[[Silver: Time-Lapse Microscopy|Time-Lapse Microscopy]]
*[[Yeast Colony PCR]]
*[[Yeast Colony PCR]]
*[[Yeast DNA Prep]]
*[[Yeast DNA Prep]]
*[[Cell Cycle Arrest]]
*[[Fixing cells]]
*[[B-galactosidase assay]]
*[[Silver: Time-Lapse Microscopy|Time-Lapse Microscopy]]
*[[Silver: Lysate for Western|Simple Yeast Lysate]] (for Western etc.)
*[[Assaying mating]]
*[[Pour YPD plates]]
*[[Dropout plates for yeast]]
*[[Layered plates]]


</div>
</div>
Line 48: Line 50:
==''In vitro''==
==''In vitro''==
===Nucleic acids===
===Nucleic acids===
*[[Denaturing acrylamide gel purification of nucleic acids]]
*[[Nucleic acid precipitation]]
*[[Phenol/chloroform extraction]]
*[[Quantification of nucleic acids]]
*[[Quantification of nucleic acids]]
*[[Phenol/chloroform extraction]]
*[[Nucleic acid precipitation]]
*[[Denaturing acrylamide gel purification of nucleic acids]]
====DNA====
====DNA====
*[[Agarose gel electrophoresis]]
*[[Agarose gel electrophoresis]]
Line 61: Line 63:
*[[PCR]]
*[[PCR]]
*[[Phosphatase treatment of linearized vector]]
*[[Phosphatase treatment of linearized vector]]
*[http://arep.med.harvard.edu/polony/polony_protocols Polony Protocols (Church/Mitra Lab)]
*[[PNK Treatment of DNA Ends]]
*[[PNK Treatment of DNA Ends]]
*[[Purification of DNA]]
*[[Purification of DNA]]
Line 69: Line 72:
*[[Site-directed mutagenesis]]
*[[Site-directed mutagenesis]]
*[[Templiphi]]
*[[Templiphi]]
*[http://arep.med.harvard.edu/polony/polony_protocols Church/Mitra Lab Polony Protocols]
 


====RNA====
====RNA====
*[[RNA Extraction]]
*[[In vitro transcription with T7 RNA polymerase]]
*[[Northern Blot, 32P End-Labeled Probes |Northern Blot, <sup>32</sup>P End-Labeled Probes]]
*[[Northern Blot, 32P End-Labeled Probes |Northern Blot, <sup>32</sup>P End-Labeled Probes]]
*[[Probe Prep, 32P End-Labeled Probes|Probe Prep, <sup>32</sup>P End-Labeled Probes]]
*[[Probe Prep, 32P End-Labeled Probes|Probe Prep, <sup>32</sup>P End-Labeled Probes]]
*[[RNA Extraction]]
*[[RNA Half-life]]
*[[RNase Protection Assay]]
*[[RNase Protection Assay]]
*[[In vitro transcription with T7 RNA polymerase]]
 
*[[RNA Half-life]]
===Protein===
===Protein===
*[[Acrylamide Gels|Acrylamide gels and SDS-PAGE]]
*[[Acrylamide Gels|Acrylamide gels and SDS-PAGE]]
*[[Silver: Destain|Coomassie Destain]]
*[[Silver: Coomassie Stain|Coomassie Stain]]
*[[Silver: Coomassie Stain|Coomassie Stain]]
*[[Silver: Destain|Coomassie Destain]]
*[[Keating:Experimental Protocols:HPLC|HPLC]]
*[[Sauer:Silver staining|Silver staining]]
*[[Sauer:Silver staining|Silver staining]]
*[[Western Blot]]
*[[Western Blot]]
*[[Keating:Experimental Protocols:HPLC|HPLC]]
 


</div>
</div>
|width=247px class="MainPageBG" style="border: 0px solid #cc3300; color: #000; background-color: #CCCCCC"|
|width=247px class="MainPageBG" style="border: 0px solid #cc3300; color: #000; background-color: #CCCCCC"|
<div style="padding: .4em .9em .9em">
<div style="text-align: left; padding: .4em .9em .9em">


==Other==
==Other==

Revision as of 11:25, 16 January 2006

In vitro

Nucleic acids

DNA


RNA

Protein


Other

Flow Cytometry

Microfluidics

Microscopy

Plate reader

General resources

  • Protocol-online- Contains a lot of useful protocols and a popular discussion section.