Quint Lab: Quint lab journal club: Difference between revisions
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# everybody has to read/prepare the paper!!! → we will discuss the paper figure-by-figure, taking turns in explaining them | # everybody has to read/prepare the paper!!! → we will discuss the paper figure-by-figure, taking turns in explaining them | ||
# keep a critical mind - try to identify the "good and the bad" | # keep a critical mind - try to identify the "good and the bad" | ||
{| border="1" | {| border="1" | ||
|+ | |+ | ||
! date!! paper !! link | ! date!! paper !! link !! who? | ||
|- | |||
! 09.12. | |||
|paper ||link || who? | |||
|- | |||
! 25.11. | |||
|paper ||link || who? | |||
|- | |- | ||
! | ! 11.11. | ||
| paper|| link || who? | |paper ||link || who? | ||
|- | |||
! 28.10. | |||
| Chaiwanon/Wang ||http://www.sciencedirect.com/science/article/pii/S0960982215002158 Curr Biol 2015|| Carla | |||
|- | |||
! 14.10. | |||
| || || Leucorea | |||
|- | |||
! 30.09. | |||
| Zhu/Balasubramanian || [http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1005085 PLoSG 2015] || Philipp | |||
|- | |||
! 16.09. | |||
| Shen/He Nat.Biotech || [http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.3321.html#affil-auth] || Carolin | |||
|- | |||
! 02.09. | |||
| Wang et al. 2015, The Plant Cell || http://www.plantcell.org/content/27/4/1128.long || Usman | |||
|- | |||
! 19.08. | |||
| Jang et al. SciRep 2015 || [http://www.nature.com/srep/2015/150710/srep12071/full/srep12071.html SciRep 2015] || Jana | |||
|- | |||
! 05.08. | |||
| Sanchez-Bermejo et al. || [http://www.plantphysiol.org/content/early/2015/07/20/pp.15.00942.full.pdf+html?with-ds=yes PP 2015] || Philipp | |||
|- | |||
! 22.07. | |||
| Bours et al. 2015 Plant Physiology || [http://www.plantphysiol.org/content/167/2/517.long Plant Physiol 2015] || Wenke | |||
|- | |||
! 24.06. | |||
| Yu et al., 2015 J Integr Plant Biol. 2015 || http://onlinelibrary.wiley.com/doi/10.1111/jipb.12363/pdf || Carla | |||
|- | |||
! 03.06. | |||
| Shikata et al., 2015 PNAS || http://www.pnas.org/content/111/52/18781.long || philipp | |||
|- | |||
! 20.05. | |||
| Bours et al. 2015 Plant Physiology || [http://www.plantphysiol.org/content/167/2/517.long Plant Physiol 2015] || Wenke | |||
|- | |||
! 06.05. | |||
| Soto et al. Plant Science || [http://www.sciencedirect.com/science/article/pii/S0168945214001642] || Julia | |||
|- | |||
! 22.04. | |||
| Kaushik et al. 2007 PLoS Biology || [http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.0050146 PLoS B 2007] || Philipp | |||
|- | |||
! 08.04. | |||
| Chen et al. PNAS 2014|| [http://www.pnas.org/content/early/2014/12/15/1412274111.abstract PNAS 2014] || Jana | |||
|- | |- | ||
! 11.03. | ! 11.03. | ||
| | | Foreman et al. 2011 Plant Journal|| [http://hallidaylab.bio.ed.ac.uk/documents/Lightreceptoraction.pdf PJ 2011] || Carla | ||
|- | |- | ||
! 04.03. + lab meeting! | ! 04.03. + lab meeting! | ||
| | | |Lee et al. 2014 nature communications|| [http://www.nature.com/ncomms/2014/141117/ncomms6473/full/ncomms6473.html NComm 2014] || Wenke | ||
|- | |- | ||
! 11.02. | ! 11.02. | ||
| Box et al. 2015 Current Biology|| [http://www.sciencedirect.com/science/article/pii/S0960982214014249] || Carla | | Box et al. 2015 Current Biology|| [http://www.sciencedirect.com/science/article/pii/S0960982214014249 CB 2015] || Carla | ||
|- | |- | ||
! 28.01. | ! 28.01. | ||
| Kurihara et al. 2014 Genes|| [http://www.mdpi.com/2073-4425/5/4/1115/pdf | | Kurihara et al. 2014 Genes|| [http://www.mdpi.com/2073-4425/5/4/1115/pdf Genes 2014]|| Philipp | ||
|- | |- | ||
! 14.01. | ! 14.01. | ||
| Dong et al. 2014 Plant Cell|| [http://www.plantcell.org/content/26/9/3630.full?sid=ee416b61-4e54-4030-ab8b-bd862c2ec13c | | Dong et al. 2014 Plant Cell|| [http://www.plantcell.org/content/26/9/3630.full?sid=ee416b61-4e54-4030-ab8b-bd862c2ec13c PC 2014]|| Carolin | ||
|- | |- | ||
! 10.12. | ! 10.12. | ||
| Johansen et al. 2014 Nature Comm|| [http://www.nature.com/ncomms/2014/140926/ncomms5848/full/ncomms5848.html | | Johansen et al. 2014 Nature Comm|| [http://www.nature.com/ncomms/2014/140926/ncomms5848/full/ncomms5848.html NComm 2014]|| Carla | ||
|- | |- | ||
! 05.12. (Friday) | ! 05.12. (Friday) | ||
| Toledo-Ortiz et al. 2014 PLOS Genetics|| [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1004416 | | Toledo-Ortiz et al. 2014 PLOS Genetics|| [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1004416 PLoS G 2014]|| Julia | ||
|- | |- | ||
! 26.11. | ! 26.11. | ||
| Franklin et. al. 2011 PNAS|| [http://www.pnas.org/content/108/50/20231.abstract | | Franklin et. al. 2011 PNAS|| [http://www.pnas.org/content/108/50/20231.abstract PNAS 2011]|| Philipp | ||
|- | |- | ||
! 19.11. | ! 19.11. | ||
| Koini et al. 2009 Current Biol|| [http://www.sciencedirect.com/science/article/pii/S0960982209006186 | | Koini et al. 2009 Current Biol|| [http://www.sciencedirect.com/science/article/pii/S0960982209006186 CB 2009]|| Jana | ||
|- | |- | ||
!12.11. | !12.11. | ||
| Gray et al. 1998 PNAS|| [http://www.pnas.org/content/95/12/7197.abstract | | Gray et al. 1998 PNAS|| [http://www.pnas.org/content/95/12/7197.abstract PNAS 1998] || Carolin | ||
|- | |- | ||
! | ! | ||
|Stavang et al. 2009|| [http://www.ncbi.nlm.nih.gov/pubmed/19686536 | |Stavang et al. 2009|| [http://www.ncbi.nlm.nih.gov/pubmed/19686536 PJ 2009]|| Carolin | ||
|- | |- | ||
|} | |} | ||
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|+ | |+ | ||
! title !! first + last author !! journal | ! title !! first + last author !! journal | ||
|- | |||
|''Natural variation in the C-Repeat Binding Factor (CBF) cold response pathway correlates with local adaptation of Arabidopsis ecotypes'' | |||
|Gehan et al. || | |||
[http://onlinelibrary.wiley.com/doi/10.1111/tpj.13027/pdf Plant Journal 2015] | |||
|- | |||
|'''BZR1 interacts with HY5 to mediate brassinosteroid- and light-regulated cotyledon opening in Arabidopsis in darkness''' | |||
|Li and He || | |||
[http://dx.doi.org/10.1016/j.molp.2015.08.014 Molecular Plant 2015] | |||
|- | |||
|'''Insight into a physiological role of the EC nighttime repressor in the Arabidopsis circadian clock ''' | |||
|Mizuno et al. || | |||
[http://pcp.oxfordjournals.org/content/early/2015/06/23/pcp.pcv094.long PCP 2015] | |||
|- | |||
|'''Natural alleles of a proteasome α 2 subunit gene contribute to thermotolerance and adaptation of African rice''' | |||
|Li et al. || | |||
[http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3305.html NG 2015] | |||
|- | |||
|'''HEMERA Couples the Proteolysis and Transcriptional Activity of PHYTOCHROME INTERACTING FACTORs in Arabidopsis Photomorphogenesis''' | |||
|Qiu et al. || | |||
[http://www.plantcell.org/content/early/2015/05/08/tpc.114.136093.abstract?papetoc PC 2015] | |||
|- | |||
|The Transcriptional Regulator BBX19 Promotes Hypocotyl Growth by Facilitating COP1-Mediated EARLY FLOWERING3 Degradation in Arabidopsis | |||
| Wang et al || | |||
[http://www.plantcell.org/content/early/2015/03/31/tpc.15.00044.abstract PlantCell 2015] | |||
|- | |||
|'''Arabidopsis DET1 degrades HFR1 but stabilizes PIF1 to precisely regulate seed germination''' | |||
| Shi/Deng|| [http://www.pnas.org/content/early/2015/03/05/1502405112.full.pdf+html?with-ds=yes PNAS 2015] | |||
|- | |||
|'''The Coding of Temperature in the Drosophila Brain''' | |||
| Gallio/Zucker|| [http://www.sciencedirect.com/science/article/pii/S0092867411000675 Cell 2011] | |||
|- | |||
|Arabidopsis HFR1 Is a Potential Nuclear Substrate Regulated by the Xanthomonas Type III Effector XopDXcc8004. | |||
| Tan/Yang|| [http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0117067 P1 2015] | |||
|- | |- | ||
|Climate variation explains a third of global crop yield variability | |Climate variation explains a third of global crop yield variability | ||
| Ray | | Ray/West|| [http://www.nature.com/ncomms/2015/150122/ncomms6989/full/ncomms6989.html NC 2015] | ||
|- | |- | ||
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|Combinatorial Complexity in a Transcriptionally Centered Signaling Hub in Arabidopsis | |Combinatorial Complexity in a Transcriptionally Centered Signaling Hub in Arabidopsis | ||
| Pfeiffer/Quail|| [http://mplant.oxfordjournals.org/content/7/11/1598.full?etoc MP 2014] | | Pfeiffer/Quail|| [http://mplant.oxfordjournals.org/content/7/11/1598.full?etoc MP 2014] | ||
|- | |- | ||
Line 111: | Line 213: | ||
|Natural CMT2 Variation Is Associated With Genome-Wide Methylation Changes and Temperature Seasonality | |Natural CMT2 Variation Is Associated With Genome-Wide Methylation Changes and Temperature Seasonality | ||
| Shen/Carlborg|| [http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1004842 PLoS G 2014] | | Shen/Carlborg|| [http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1004842 PLoS G 2014] | ||
|- | |- | ||
|The Arabidopsis thaliana RNA-binding protein FCA regulates thermotolerance by modulating the detoxification of reactive oxygen species | |The Arabidopsis thaliana RNA-binding protein FCA regulates thermotolerance by modulating the detoxification of reactive oxygen species | ||
| Lee/Park|| [http://onlinelibrary.wiley.com/doi/10.1111/nph.13079/abstract?campaign=woletoc NP 2014] | | Lee/Park|| [http://onlinelibrary.wiley.com/doi/10.1111/nph.13079/abstract?campaign=woletoc NP 2014] | ||
|- | |- | ||
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| Seaton/Halliday || [http://onlinelibrary.wiley.com/doi/10.15252/msb.20145766/abstract MSB 2015] | | Seaton/Halliday || [http://onlinelibrary.wiley.com/doi/10.15252/msb.20145766/abstract MSB 2015] | ||
|- | |- | ||
|Cellular auxin homeostasis under high temperature is regulated through a sorting NEXIN1-dependent endosomal trafficking pathway | |||
| Hanzawa/Rahman || [http://www.plantcell.org/content/25/9/3424.long PC 2011] | |||
|- | |||
|Negative regulatory roles of DE-ETIOLATED1 in flowering time in Arabidopsis | |||
| Kang et al. || [http://www.nature.com/srep/2015/150512/srep09728/full/srep09728.html SciRep 2015] | |||
|- | |||
|Genetic and epigenetic control of plant heat responses | |||
|Liu et al. || [http://journal.frontiersin.org/article/10.3389/fpls.2015.00267/full Front.PlantSci 2015] | |||
|- | |||
|CUL4 forms an E3 ligase with COP1 and SPA to promote light-induced degradation of PIF1 | |||
|Zhu et al. || [http://www.nature.com/ncomms/2015/150603/ncomms8245/full/ncomms8245.html NC 2015] | |||
|- | |||
|'''The spliceosome assembly factor GEMIN2 attenuates the effects of temperature on alternative splicing and circadian rhythms.''' | |||
| Schlaen et al. || [http://www.pnas.org/content/early/2015/07/08/1504541112.full.pdf PNAS 2015] | |||
|- | |||
|The effect of temperature on the male and female recombination landscape of barley | |||
|Phillips et al. || | |||
[http://onlinelibrary.wiley.com/doi/10.1111/nph.13548/pdf NP 2015] | |||
|- | |||
|Phosphorylation of CONSTANS and its COP1-dependent degradation during photoperiodic flowering of Arabidopsis | |||
|Sarid-Krebs et al. || [http://onlinelibrary.wiley.com/doi/10.1111/tpj.13022/abstract PJ 2015] | |||
|- | |||
|'''The EC Night-Time Repressor Plays a Crucial Role in Modulating Circadian Clock Transcriptional Circuitry by Conservatively Double-Checking Both Warm-Night and Night-Time-Light Signals in a Synergistic Manner in Arabidopsis thaliana''' | |||
|Mizuno et al. || [http://pcp.oxfordjournals.org/content/55/12/2139.long PP 2014] | |||
|- | |||
|SHW1 Interacts with HY5 and COP1, and Promotes COP1-mediated Degradation of HY5 During Arabidopsis Seedling Development | |||
|Srivastava et al. || [http://www.ncbi.nlm.nih.gov/pubmed/26474641 PP 2015] | |||
|- | |||
|Modulation of Ambient Temperature-Dependent Flowering in Arabidopsis thaliana by Natural Variation of FLOWERING LOCUS M. | |||
| Lutz et al. || [http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1005588 PG 2015] | |||
|- | |||
|} | |} |
Latest revision as of 06:26, 29 October 2015
Quint lab journal clubWednesday 10 am person responsible for the respective date has to
but keep in mind:
|