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papers of the month 03/12 cd - Todesco et al. (2012): Natural Variation in Biogenesis Efficiency of Individual Arabidopsis thaliana MicroRNAs Current Biology cd - de Felippes et al. (2012): MIGS: miRNA-induced gene silencing Plant Journal cd - Denby et al. (2012): Negative feedback confers mutational robustness in yeast transcription factor regulation PNAS cd - Yashina et al. Regeneration of whole fertile plants from 30,000-y-old fruit tissue buried in Siberian permafrost PNAS cd - Chickarmane et al. (2012) Cytokinin signaling as a positional cue for patterning the apical–basal axis of the growing Arabidopsis shoot meristem PNAS 04/11 ku - Hu et al. (2011): The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nature Genetics cd - Sun et al (2011): Jasmonate modulates endocytosis and plasma membrane accumulation of the Arabidopsis PIN2 protein. New Phytologist 01/11 cd - Lucas et al. (2011): SHORT-ROOT Regulates Primary, Lateral, and Adventitious Root Development in Arabidopsis Plant Phys 12/10 cd - Galpez & Reymond (2010): Natural Variation in Arabidopsis thaliana Revealed a Genetic Network Controlling Germination Under Salt Stress. PLoS One cd - Wabnik et al. (2010): Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling. [ http://www.nature.com/msb/journal/v6/n1/full/msb2010103.html MolSysBiol] mq - Domazet-Loso & Tautz: A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns. Nature 468:815 mq - Jurado/del Pozo: The Arabidopsis Cell Cycle F-Box Protein SKP2A Binds to Auxin. [Plant Cell online early] mq - Li/Borevitz: Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana. PNAS 107:21199 mq - Nicotra et al.: Plant phenotypic plasticity in a changing climate. Trends in Plant Sciences 15:684 mq - Ahuja et al.: Plant molecular stress responses face climate change. Trends in Plant Sciences 15:664 mq - Baxter et al.: Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora arabidopsidis Genome. Science 330:1549 mq - Schirawski/Kahmann: Pathogenicity Determinants in Smut Fungi Revealed by Genome Comparison. Science 330:1546 mq - Spanu/Panstruga: Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism. Science 330:1543 mq - Raffaele/Kamoun: Genome Evolution Following Host Jumps in the Irish Potato Famine Pathogen Lineage. Science 330:1540 mq - Bennett et al.: Dynamics of Cullin-RING Ubiquitin Ligase Network Revealed by Systematic Quantitative Proteomics. Cell 143:951 mq - van Wageningen et al.: Functional Overlap and Regulatory Links Shape Genetic Interactions between Signaling Pathways. Cell 143:991 11/10 cd - Marta Del Bianco and Stefan Kepinski: Context, Specificity and Self-Organization in Auxin Response Cold Spring Harb Persp Biol mq - de Smet et al.: Unraveling the evolution of auxin signaling Plant Phys online early mq - Li/Borevitz: Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana PNAS online early mq - Mao et al.: Linking differential domain functions of the GS3 protein to natural variation of grain size in rice PNAS 9:19579 mq - Prigge/Estelle: Physcomitrella patens Auxin-Resistant Mutants Affect Conserved Elements of an Auxin-Signaling Pathway Current Biology 20:1907 mq - Sakata et al.: Tissue-specific auxin signaling in response to temperature fluctuation Plant Signaling & Behavior online early mq - Sato/Katagiri: Network Modeling Reveals Prevalent Negative Regulatory Relationships between Signaling Sectors in Arabidopsis Immune Signaling. PLoS Pathogens 6(7): e1001011 mq - Bergelson & Roux: Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana. Nature Rev Genet 11:867 mq - Tsuda/Hayashi: Alkoxy-auxins are selective inhibitors of auxin transport mediated by PIN, ABCB and AUX1 transporters. JBC online early mq - Spaepen and Vanderleyen: Auxin and Plant-Microbe Interactions. Cold Spring Harb Perspect Biol. online early mq - Zhao et al.: SOS3 mediates lateral root development under low salt stress through regulation of auxin redistribution and maxima in Arabidopsis. New Phytologist online early mq - Alcazar/Reymond: Natural variation at Strubbelig Receptor Kinase 3 drives immune-triggered incompatibilities between Arabidopsis thaliana accessions. Nature Genet online early mq - Liu & Zhu: Functional divergence of the NIP III subgroup proteins involved altered selective constraints and positive selection. BMC Plant Biology 10:256 mq - Lima et al.: Genomic evolution and complexity of the Anaphase-promoting Complex (APC) in land plants. BMC Plant Biology 10:254 10/10 mq - Shoval & Alon: SnapShot: Network Motifs. Cell 143:326e1-2 mq - Ruschaki et al.: The proteasome antechamber maintains substrates in an unfolded state. Nature 467:868–871 mq - Sheard et al.: Jasmonate perception by inositol-phosphate-potentiated COI1-JAZ co-receptor. Nature online early mq - Xu et al.: Cell surface- and rho GTPase-based auxin signaling controls cellular interdigitation in Arabidopsis. Cell 143:99-110 mq - Robert/Friml: ABP1 mediates auxin inhibition of clathrin-dependent endocytosis in Arabidopsis. Cell 143:111-121 mq - Yu et al.: Impact of natural genetic variation on the transcriptome of autotetraploid Arabidopsis thaliana. PNAS online early mq - de Rybel et al.: A Novel Aux/IAA28 Signaling Cascade Activates GATA23-Dependent Specification of Lateral Root Founder Cell Identity. Current Biology 19:1697 mq - Prigge/Estelle: Physcomitrella patens Auxin-Resistant Mutants Affect Conserved Elements of an Auxin-Signaling Pathway. Current Biology online early 09/10 mq - Dubois et al.: Physiological and Genetic Characterization of End-of-Day Far-Red Light Response in Maize Seedlings. Plant Phys. 154:173 08/10 mq - Chen and Lübberstedt: Molecular basis of trait correlations. Trends in Plant Sciences 15:454 mq - Tromas/Perrot-Rechenmann: AUXIN BINDING PROTEIN 1: functional and evolutionary aspects. Trends in Plant Sciences 15:436 mq - Sulpice/Stitt: Network Analysis of Enzyme Activities and Metabolite Levels and Their Relationship to Biomass in a Large Panel of Arabidopsis Accessions. Plant Cell online early mq - Schwember & Bradford: Quantitative trait loci associated with longevity of lettuce seeds under conventional and controlled deterioration storage conditions. JXB online early mq - Shen et al.: Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.). http://jxb.oxfordjournals.org/cgi/content/abstract/erq208v1?etoc JXB online early mq - Nemri/Jones: Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mapping. PNAS 107:10302 mq - Tognetti et al.: Perturbation of Indole-3-Butyric Acid Homeostasis by the UDP-Glucosyltransferase UGT74E2 Modulates Arabidopsis Architecture and Water Stress Tolerance. Plant Cell online early mq - Hou et al.: A platform of high-density INDEL/CAPS markers for map-based cloning in Arabidopsis. Plant Journal 63:880 07/10 mq - Juenger et al.: Exploring genetic and expression differences between physiologically extreme ecotypes: comparative genomic hybridization and gene expression studies of Kas-1 and Tsu-1 accessions of Arabidopsis thaliana. Plant, Cell and Environment 33:1268 mq - Earley et al.: An endogenous F-box protein regulates ARGONAUTE1 in Arabidopsis thaliana. Silence online early mq - Finet et al.: Parallel structural evolution of Auxin Response Factors in the angiosperms. Plant Journal online early mq - Klingler et al.: ABA receptors: the START of a new paradigm in phytohormone signalling. J Exp Botany 61:3199 mq - An et al.: Ethylene-Induced Stabilization of ETHYLENE INSENSITIVE3 and EIN3-LIKE1 Is Mediated by Proteasomal Degradation of EIN3 Binding F-Box 1 and 2 That Requires EIN2 in Arabidopsis. Plant Cell online early mq - Trujillo & Shirasu: Ubiquitination in plant immunity. COPB 13:402 06/10 cd - Zhang et al.: High frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleases PNAS June 29, 2010 vol. 107 12028-12033 cd - Osakabe et al.: Site-directed mutagenesis in Arabidopsis using custom-designed zinc finger nucleases PNAS June 29, 2010 vol. 107 12034-12039 ku - Ge et al.: Arabidopsis ROOT UVB SENSITIVE2/WEAK AUXIN RESPONSE1 Is Required for Polar Auxin Transport Plant Cell 10.1105/tpc.110.074195 cd - Strader et al.: Conversion of endogenous indole-3-butyric acid to indole-3-acetic acid drives cell expansion in Arabidopsis thaliana seedlings. Plant Phys 04/10 cd - Pauwels et al.: NINJA connects the co-repressor TOPLESS to jasmonate signalling Nature 464, 788-791 mq - Bomblies/Weigel: Local-scale patterns of genetic variability, outcrossing, and spatial structure in natural stands of Arabidopsis thaliana. PLoS Genetics 6:e1000890 mq - Marin et al.: miR390, Arabidopsis TAS3 tasiRNAs, and Their AUXIN RESPONSE FACTOR Targets Define an Autoregulatory Network Quantitatively Regulating Lateral Root Growth. Plant Cell online early mq - Baudry et al.: F-Box Proteins FKF1 and LKP2 Act in Concert with ZEITLUPE to Control Arabidopsis Clock Progression. Plant Cell online early mq - Soeno et al.: Auxin-biosynthesis inhibitors, identified by genomics-based approach, provide insights into auxin biosynthesis. Plant Cell Physiol. online early mq - Laitinen/Weigel: Identification of a spontaneous frame shift mutation in a non-reference Arabidopsis thaliana accession using whole genome sequencing. Plant Phys online early 03/10 ku - Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines Nature advance online publication 24 March 2010 cd - Wang et al.: Genome-wide analysis of primary auxin-responsive Aux/IAA gene family in maize (Zea mays. L.)Mol Biol Rep. 2010 Mar 16. Epub ahead of print cd - Schlereth et al.: MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor.Nature. 2010 Mar 10. [Epub ahead of print] mq - Krupinski and Jönsson: Modeling Auxin-regulated Development. Cold Spring Harb Perspect Biol. 2:a001560 mq - Jodi/Nemhauser: Do Trees Grow on Money? Auxin as the Currency of the Cellular Economy. Cold Spring Harb Perspect Biol. 2:a001420 mq - Normanly: Approaching cellular and molecular resolution of auxin biosynthesis and metabolism. Cold Spring Harb Perspect Biol. 2:a001594 mq - Scarpella/Tsiantis: Control of leaf and vein development by auxin. Cold Spring Harb Perspect Biol. 2:a001511 mq - Maron et al.: Two functionally distinct members of the MATE (multi-drug and toxic compound extrusion) family of transporters potentially underlie two major aluminum tolerance QTLs in maize. Plant Journal 61:728 mq - Mendez-Vigo/Alonso-Blanco: Temporal analysis of natural variation for the rate of leaf production and its relationship with flowering initiation in Arabidopsis thaliana. J Exp Bot. online early mq - Ren et al.: RAS1, a quantitative trait locus for salt tolerance and ABA sensitivity in Arabidopsis. PNAS online early mq - Schlereth/Weijers: MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor. Nature online early mq - Ravi and Chan: Haploid plants produced by centromere-mediated genome elimination. Nature 464:615 02/10 cd- Roudier et al.: Very-Long-Chain Fatty Acids Are Involved in Polar Auxin Transport and Developmental Patterning in Arabidopsis Plant Cell online early cd- Eklund et al.: The Arabidopsis thaliana STYLISH1 Protein Acts as a Transcriptional Activator Regulating Auxin Biosynthesis Plant Cell online early cd- Yi et al.: A basic helix-loop-helix transcription factor controls cell growth and size in root hairs. Nat Gen 2010 mq - Broekgaarden et al.: Intraspecific variation in herbivore community composition and transcriptional profiles in field-grown Brassica oleracea cultivars. Journal of Exp. Botany 61:807 mq - Ishikawa et al.: A major quantitative trait locus for increasing cadmiumspecific concentration in rice grain is located on the short arm of chromosome 7. Journal of Exp. Botany 61:923–934 mq - Proost et al.: PLAZA: A Comparative Genomics Resource to Study Gene and Genome Evolution in Plants. Plant Cell 21:3718 mq - de Smet et al.: Bimodular auxin response controls organogenesis in Arabidopsis. PNAS online early mq - Kang et al.: PDR-type ABC transporter mediates cellular uptake of the phytohormone abscisic acid. PNAS online early mq - Lohmann et al.: SLOW MOTION Is Required for Within-Plant Auxin Homeostasis and Normal Timing of Lateral Organ Initiation at the Shoot Meristem in Arabidopsis. Plant Cell online early mq - Middleton et al.: Mathematical Modelling of the Aux/IAA Negative Feedback Loop. Bull Math Biol. online early mq - Das et al.: A composite transcriptional signature differentiates responses towards closely related herbicides in Arabidopsis thaliana and Brassica napus. Plant Mol Biol 72:545-556 mq - Vidal et al.: Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana. PNAS online early mq - The International Brachypodium Initiative: Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463:763 mq - Foxe and Wright: Signature of diversifying selection on members of the pentatricopeptide repeat protein family in Arabidopsis lyrata. Genetics 183:663 mq - Huang et al.: The earliest stages of adaptation in an experimental plant population: strong selection on QTLS for seed dormancy. Mol Ecol online early mq - Zhao and Hasenstein: Physiological interactions of antiauxins with auxin in roots. J Plant Physiol online early mq - Son et al.: In vitro and in vivo interaction of AtRma2 E3 ubiquitin ligase and auxin binding protein 1. Biochem Biophys Res Commun. online early mq - Amoutzias et al.: Posttranslational regulation impacts the fate of duplicated genes. PNAS 107:2967 mq - Fraser et al.: Evidence for widespread adaptive evolution of gene expression in budding yeast. PNAS 107:2977 mq - Platt/Borevitz: The Scale of Population Structure in Arabidopsis thaliana. PLoS Genet 6:e1000843. mq - Lim et al.: Auxin response factor 2 (ARF2) plays a major role in regulating auxin-mediated leaf longevity. J Exp Bot online early mq - Ansell et al.: Population structure and historical biogeography of European Arabidopsis lyrata. Heredity online early 01/10 ku - Ossowski/Weigel/Lynch: The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana. Science 327:92-94 cd - Giakountis et al.: Distinct Patterns of Genetic Variation Alter Flowering Responses of Arabidopsis Accessions to Different Daylengths Plant Physiol. 2010;152 177-191 mq - Proost et al.: PLAZA: A Comparative Genomics Resource to Study Gene and Genome Evolution in Plants Plant Cell online early mq - Rutter et al.: SPONTANEOUS MUTATION PARAMETERS FOR ARABIDOPSIS THALIANA MEASURED IN THE WILD Evolution online early mq - Jha et al.: Variation in salinity tolerance and shoot sodium accumulation in Arabidopsis ecotypes linked to differences in the natural expression levels of transporters involved in sodium transport Plant Cell Environment online early mq - Joosen et al.: Germinator: A software package for high-throughput scoring and curve fitting of Arabidopsis seed germination Plant Journal online early mq - Krecek et al.: The PIN-FORMED (PIN) protein family of auxin transporters Genome Biology online early mq - Parry/Estelle: Complex regulation of the TIR1/AFB family of auxin receptors PNAS online early mq - Kieffer/Kepinski: Defining auxin response contexts in plant development. Current Opinion Plant Biol 13:12-20] mq - Kagale et al.: Genome-wide analysis of Ethylene responsive element binding factor-associated Amphiphilic Repression (EAR) motif-containing transcriptional regulators in Arabidopsis. Plant Phys online early mq - Mustroph et al.: Cross-kingdom comparison of transcriptomic adjustments to low oxygen stress highlights conserved and plant-specific responses. Plant Phys online early mq - Katori et al.: Dissecting the genetic control of natural variation in salt tolerance of Arabidopsis thaliana accessions. Journal Exp Bot online early 12/09 cd - Strader&/Beisner/Bartel: Silver Ions Increase Auxin Efflux Independently of Effects on Ethylene Response Plant Cell 21: 3585-3590 mq - Kieffer/Kepinski: Defining auxin response contexts in plant development. Current Opinion in Plant Biology 13:1 mq - Nishimura et al.: Structural Mechanism of Abscisic Acid Binding and Signaling by Dimeric PYR1. Science online early mq - Santiago et al.: The abscisic acid receptor PYR1 in complex with abscisic acid. Nature 462:665-8 mq - Melcher et al.: A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors. Nature 462:602-8 mq - Miyazono et al.: Structural basis of abscisic acid signalling. Nature 462:609-14 mq - Yin et al.: Structural insights into the mechanism of abscisic acid signaling by PYL proteins. Nat Struct Mol Biol. 16:1230-6. mq - Fujii et al.: In vitro reconstitution of an abscisic acid signalling pathway. Nature 462:660-4 11/09 mq - Sterlen/Vuylsteke: A Population Genomics Study of the Arabidopsis Core Cell Cycle Genes Shows the Signature of Natural Selection. Plant Cell online early mq - Wingler et al.: QTL analysis for sugar-regulated leaf senescence supports flowering-dependent and -independent senescence pathways. New Phytologist online early mq - Maerkl and Quake: Experimental determination of the evolvability of a transcription factor. PNAS online early mq - Li et al.: The ARABIDOPSIS Accession Pna-10 Is a Naturally Occurring sng1 Deletion Mutant. Molecular Plant online early mq - Guo et al.: Independent Recruitment of F Box Genes to Regulate Hermaphrodite Development during Nematode Evolution. Current Biology 19:1853-1860 mq - Kliebenstein: Systems Biology uncovers the foundation of natural genetic diversity. Plant Phys online early 10/09 mq - Angelovici et al.: Deciphering transcriptional and metabolic networks associated with lysine metabolism during Arabidopsis seed development. Plant Phys online early mq - Matsuno et al.: Evolution of a Novel Phenolic Pathway for Pollen Development. Science online early mq - Suzuki et al.: Differential expression and affinities of Arabidopsis gibberellin receptors can explain variation in phenotypes of multiple knock-out mutants. Plant J. 60:48 mq - Lewis/Spalding: Auxin transport into cotyledons and cotyledon growth depend similarly on the ABCB19 Multidrug Resistance-like transporter. Plant J. 60:91 mq - Myles/Buckler: Association Mapping: Critical Considerations Shift from Genotyping to Experimental Design Plant Cell 21:2194 mq - Rawat/Harmer: REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathways. PNAS 106:16883 mq - Stich: Comparison of Mating Designs for Establishing Nested Association Mapping Populations in Maize and Arabidopsis thaliana. Genetics online early mq - Prusinkiewicz/Leyser: Control of bud activation by an auxin transport switch. PNAS online early 09/09 mq - Zhou et al.: Evolutionary and Expression Signatures of Pseudogenes in Arabidopsis and Rice Plant Phys 151:3 mq - Tessadori et al.: Phytochrome B and histone deacetylase 6 control light-induced chromatin compaction in Arabidopsis thaliana. PLoS Genet 5:e1000638 mq - Chan/Kliebenstein: Understanding the Evolution of Defense Metabolites in Arabidopsis thaliana Using Genome-Wide Association Mapping. Genetics online early mq - de Rybel et al.: The past, present and future of chemical biology in auxin research. ACS Chem Biol online early mq - van Zanten et al.: Hormone- and light-mediated regulation of heat-induced differential petiole growth in Arabidopsis thaliana. Plant Phys online early 08/09 cd - Stavang et al.:Hormonal regulation of temperature-induced growth in Arabidopsis Plant Journal cd - Chapmann/Estelle: Mechanism of Auxin-Regulated Gene Expression in Plants Annual Reviews Genetics (liegt bei mir) mq - Strader and Bartel: The Arabidopsis PLEIOTROPIC DRUG RESISTANCE8/ABCG36 ATP Binding Cassette Transporter Modulates Sensitivity to the Auxin Precursor Indole-3-Butyric Acid. Plant Cell online early cd - Ibañes et al.:Brassinosteroid signaling and auxin transport are required to establish the periodic pattern of Arabidopsis shoot vascular bundles PNAS mq - Myles/Buckler: Association Mapping: Critical Considerations Shift from Genotyping to Experimental Design. Plant Cell online early mq - French et al.: High-Throughput Quantification of Root Growth Using a Novel Image-Analysis Tool. Plant Phys online early mq - Schwartz/Weigel: Cis-regulatory Changes at FLOWERING LOCUS T Mediate Natural Variation in Flowering Responses of Arabidopsis thaliana. Genetics online early mq - Ghandilyan/aarts: Genetic analysis identifies quantitative trait loci controlling rosette mineral concentrations in Arabidopsis thaliana under drought. New Phytologist online early mq - Pils and Heyl: Unraveling the evolution of cytokinin signaling. Plant Phys online early mq - Lokerse and Weijers: Auxin enters the matrix — assembly of response machineries for specific outputs. Current Opin Plant Biol online early mq - Vierstra: The ubiquitin-26S proteasome system at the nexus of plant biology. Nat Rev Mol Cell Biol. 2009, 10:385 mq - Stavang et al.: Hormonal regulation of temperature-induced growth in Arabidopsis. Plant J online early mq - Birker et al.: A locus conferring resistance to Colletotrichum higginsianum is shared by four geographically distinct Arabidopsis accessions. Plant J online early mq - Chapman and Estelle: Mechanism of Auxin-Regulated Gene Expression in Plants. Annu Rev Genet online early mq - Sato and Yamamoto: What's the physiological role of Domain II-less Aux/IAA proteins? Plant Signaling & Behavior 3:496 mq - Stepanova and Alonso: Ethylene signaling and response: where different regulatory modules meet. Current Opin Plant Biol online early mq - Yan et al.: The Arabidopsis CORONATINE INSENSITIVE1 Protein Is a Jasmonate Receptor. Plant Cell online early 07/09 cd - McNally et al. :Genomewide SNP variation reveals relationships among landraces and modern varieties of rice PNAS mq - Kazan: Linking development to defense: auxin in plant-pathogen interactions. Trends Plant Sci online early mq - Chiang et al.: Major flowering time gene, FLOWERING LOCUS C, regulates seed germination in Arabidopsis thaliana. PNAS online early mq - Weigel: The 1001 Genomes Project for Arabidopsis thaliana. Genome Biology 10:107 mq - Alonso-Blanco et al.: What Has Natural Variation Taught Us about Plant Development, Physiology, and Adaptation? Plant Cell online early mq - Grunewald et al.: Expression of the Arabidopsis jasmonate signalling repressor JAZ1/TIFY10A is stimulated by auxin. EMBO Rep. online early mq - Ehrenreich/Purugganan: Candidate Gene Association Mapping of Arabidopsis Flowering Time. Genetics online early mq - Slotte et al.: Splicing Variation at a FLOWERING LOCUS C Homoeolog is Associated With Flowering Time Variation in the Tetraploid Capsella bursa-pastoris. Genetics online early mq - Kover et al.: A Multiparent Advanced Generation Inter-Cross to fine-map quantitative traits in Arabidopsis thaliana. PLoS Genetics 5:e1000551 mq - Yamada/Estelle: The TRANSPORT INHIBITOR RESPONSE2 (TIR2) gene is required for auxin synthesis and diverse aspects of plant development. Plant Phys online early mq - Merlet et al.: Regulation of cullin-RING E3 ubiquitin-ligases by neddylation and dimerization. Cell Mol Life Sci 66:1924 mq - Flowers/Purugganan: Population genomics of the Arabidopsis thaliana flowering time gene network. Mol Biol Evol online early 06/09 cd - Pagnussat et al.: Auxin-Dependent Patterning and Gamete Specification in the Arabidopsis Female Gametophyte Science cd - Lewis et al.: Auxin Transport into Cotyledons and Cotyledon Growth Depend Similarly on the ABCB19 Multidrug Resistance-like Transporter Plant Journal cd - Bajguz & Piotrowska: Conjugates of auxin and cytokinin.Phytochemistry Epub ahead of print mq - Ding et al.: Genome-wide identification of BURP domain-containing genes in rice reveals a gene family with diverse structures and responses to abiotic stresses. Planta 230:149 mq - Vierstra: The ubiquitin–26S proteasome system at the nexus of plant biology. Nature Reviews Molecular Cell Biology 10:385 mq - Papanov/Palme: The evolution of nuclear auxin signalling. BMC Evol. Biol. online early mq - Petersson/Ljung: An Auxin Gradient and Maximum in the Arabidopsis Root Apex Shown by High-Resolution Cell-Specific Analysis of IAA Distribution and Synthesis. Plant Cell online early mq - Romanel et al.: Evolution of the B3 DNA binding superfamily: new insights into REM family gene diversification. PLoS1 4:e5791 mq - Kliebenstein: Quantitative genomics: analyzing intraspecific variation using global gene expression polymorphisms or eQTLs. Annu Rev Plant Biol 60:93 mq - Meyer/Altmann: QTL analysis of early stage heterosis for biomass in Arabidopsis. Theor Appl Genet online early mq - Mravec/Friml: Subcellular homeostasis of phytohormone auxin is mediated by the ER-localized PIN5 transporter. Nature online early mq - Zeller et al.: Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays Plant J 58:1068 mq - Kliebenstein: Advancing Genetic Theory and Application by Metabolic Quantitative Trait Loci Analysis. Plant Cell online early mq - Dun et al.: Strigolactones: discovery of the elusive shoot branching hormone. Trends Plant Sci. online early mq - Weijers/Friml: SnapShot: Auxin signaling and transport. Cell 136:1172 mq - Santner/Estelle: Recent advances and emerging trends in plant hormone signalling. Nature 459:1071 mq - Ester et al.: The Phytohormone Auxin Induces G1 Cell-Cycle Arrest of Human Tumor Cells. Planta Med online early mq - dos Santos/Offringa: Auxin-induced, SCFTIR1-mediated poly-ubiquitination marks AUX/IAA proteins for degradation. Plant J 59:100 mq - Johannes et al.: Assessing the impact of transgenerational epigenetic variation on complex traits. PLoS Genetics 5:e1000530 05/09 cd- Sun et al.: Arabidopsis ASA1 Is Important for Jasmonate-Mediated Regulation of Auxin Biosynthesis and Transport during Lateral Root Formation. Plant Cell Advance Online cd - Trigueros et. al.: The NGATHA Genes Direct Style Development in the Arabidopsis Gynoecium. Plant Cell Advance Online mq - Venancio et al.: Reconstructing the ubiquitin network - cross-talk with other systems and identification of novel functions. Genome Biol. 10:R33 mq - Sorefan et al.: A regulated auxin minimum is required for seed dispersal in Arabidopsis. Nature 459:583 04/09 mq - Ikeda-Kawakatsu et al.: Expression Level of ABERRANT PANICLE ORGANIZATION 1 Determines Rice Inflorescence Form through Control of Cell Proliferation in the Meristem. Plant Phys. online early mq - Kaufmann et al.: Target Genes of the MADS Transcription Factor SEPALLATA3: Integration of Developmental and Hormonal Pathways in the Arabidopsis Flower. PLoS Biology 21:e90 mq - Moons: Transcriptional profiling of the PDR gene family in rice roots in response to plant growth regulators, redox perturbations and weak organic acid stresses. Planta 229:53 mq - Hayashi et al.: Toyocamycin specifically inhibits auxin signaling mediated by SCFTIR1 pathway. Phytochemistry 70:190 mq - Jorgensen and Emerson: RPW8 and resistance to powdery mildew pathogens in natural populations of Arabidopsis lyrata. New Phytologist online early cd - Ploense et al.: A gain-of-function mutation in IAA18 alters Arabidopsis embryonic apical patterning. Development [1] cd - Sukumar et al.: PINOID kinase regulates root gravitropism through modulation of PIN2-dependent basipetal auxin transport in Arabidopsis thaliana. PlantPhys ePub [2] cd - Sugawara et al.: Biochemical analyses of indole-3-acetaldoxime-dependent auxin biosynthesis in Arabidopsis [3] cd - Yang & Murphy: Functional expression and characterization of Arabidopsis ABCB, AUX 1 and PIN auxin transporters in Schizosaccharomyces pombe. [4] cd - Santos Maraschin et al.: Auxin-induced, SCFTIR1-mediated poly-ubiquitination marks of AUX/IAA proteins for degradation. [5] cd - Nakasone et al.: A gene encoding SMALL ACIDIC PROTEIN 2 potentially mediates the response to synthetic auxin, 2,4-dichlorophenoxyacetic acid, in Arabidopsis thaliana. [6] kommt man leider noch nicht dran!----In diesem Zusammenhang aber auch vielleicht interessant: A small acidic protein 1 (SMAP1) mediates responses of the Arabidopsis root to the synthetic auxin 2,4-dichlorophenoxyacetic acid (2006)[7] 03/09 mq - Liti et al.: Population genomics of domestic and wild yeasts. Nature 458:337 mq - Schacherer et al.: Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae. Nature 458:342 mq - Yuan et al.: A naturally occurring splicing site mutation in the Brassica rapa FLC1 gene is associated with variation in flowering time. JXB 60:1299 mq - Craig et al.: E3 ubiquitin ligases and plant innate immunity. JXB 60:1123 mq - Titapiwatanakun and Murphy: Post-transcriptional regulation of auxin transport proteins: cellular trafficking, protein phosphorylation, protein maturation, ubiquitination, and membrane composition. JXB 60:1093 mq - Somers: Thinking outside the F-box: novel ligands for novel receptors. Trends Plant Sci online early mq - Cooper et al.: Modeling QTL for complex traits: detection and context for plant breeding. Curr Opin Plant Biol online early mq - Benkova et al.: A morphogenetic trigger: is there an emerging concept in plant developmental biology? Trends Plant Sci online early mq - Lau et al.: Auxin signaling in algal lineages: fact or myth? Trends Plant Sci online early mq - Skirpan/McSteen: BARREN INFLORESCENCE2 Interaction with ZmPIN1a Suggests a Role in Auxin Transport During Maize Inflorescence Development. [http://pcp.oxfordjournals.org/cgi/content/abstract/50/3/652?etoc Plant Cell Phys 50:652 mq - Pfalz/Kroymann: The Gene Controlling the Indole Glucosinolate Modifier1 Quantitative Trait Locus Alters Indole Glucosinolate Structures and Aphid Resistance in Arabidopsis. Plant Cell online early mq - Lewis/Muday: Measurement of auxin transport in Arabidopsis thaliana. Nat Prot 4:437 mq - Rae et al.: Five QTL hotspots for yield in short rotation coppice bioen- ergy poplar: The Poplar Biomass Loci. BMC Plant Biol 9::23 mq - Gusti/Genschik: The Arabidopsis thaliana F-box protein FBL17 is essential for progression through the second mitosis during pollen development. PLoS1 4:e4780 mq - Lee/Ellis: Arabidopsis mitogen-activated protein kinase MPK12 interacts with the MAPK phosphatase IBR5 and regulates auxin signaling. Plant J 57:975-985 mq - Pollmann/Weiler: Tryptophan-dependent indole-3-acetic acid biosynthesis by ‘IAA-synthase’ proceeds via indole-3-acetamide. Phytochemistry online early mq - Craig et al.: E3 ubiquitin ligases and plant innate immunity. J Exp Bot online early mq - Stich/Melchinger: Comparison of mixed-model approaches for association mapping in rapeseed, potato, sugar beet, maize, and Arabidopsis. BMC Genomics online early 02/09 cd - Ruzika et al.: Cytokinin regulates root meristem activity via modulation of the polar auxin transport.PNAS early [8] cd - Bentkova & Hejatko - Review: Hormone interactions at the root apical meristem. Plant Mol Biol [9] cd - Kuppusamy et al. -Review: Cross-regulatory mechanisms in hormone signaling. Plant Mol Biol [10] cd - Fukaki & Tasaka-Review: Hormone interactions during lateral root formation Plant Mol Biol [11] cd- Takahashi et al. Review: Hormonal interactions during root tropic growth: hydrotropism versus gravitropism. 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