Quint Lab:papers of the month

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papers of the month

10/08

  • mq - McKhann et al.: Natural variation in CBF gene sequence, gene expression and freezing tolerance in the Versailles core collection of Arabidopsis thaliana. BMC Plant Biology 8:105
  • mq - Feraru & Friml: PIN polar targeting. Plant Phys 157:1553-9
  • mq - Rowe & Kliebenstein: Complex Genetics Control Natural Variation in Arabidopsis thaliana Resistance to Botrytis cinerea. Genetics online early
  • mq - Zhu et al.: Status and Prospects of Association Mapping in Plants. Plant Genome 1:5-20
  • mq - Yang et al.: F-box Gene Family Is Expanded in Herbaceous Annual Plants Relative to Woody Perennial Plants. Plant Phys future contents - noch kein abstract!
  • mq - Zhang et al.: F-box Protein DOR Functions as a Novel Inhibitory Factor for ABA-induced Stomatal Closure under Drought Stress in Arabidopsis thaliana. Plant Phys online early
  • mq - Strader/Bartel: Arabidopsis iba response5 (ibr5) Suppressors Separate Responses to Various Hormones. Genetics online early

09/08

  • mq - Souer et al.: Patterning of Inflorescences and Flowers by the F-Box Protein DOUBLE TOP and the LEAFY Homolog ABERRANT LEAF AND FLOWER of Petunia. Plant Cell 20:2033
  • mq - marion et al.: Systematic analysis of protein subcellular localization and interaction using high-throughput transient transformation of Arabidopsis seedlings. Plant J online early
  • mq - Ossowski et al.: Sequencing of natural strains of Arabidopsis thaliana with short reads. Genome Research online early
  • mq - Zhang et al.: Flavones and flavonols play distinct critical roles during nodulation of Medicago truncatula by Sinorhizobium meliloti. Plant J online early
  • mq - Mravec et al.: Interaction of PIN and PGP transport mechanisms in auxin distribution-dependent development. Development online early
  • mq - Carrier et al.: The Binding of Auxin to the Arabidopsis Auxin Influx Transporter AUX1. Plant Phys 148:529

08/08

  • mq - Udvardi et al.: Eleven Golden Rules of Quantitative RT-PCR. Plant Cell 20:1736
  • mq - Lau et al.: The Evolving Complexity of the Auxin Pathway. Plant Cell 20:1738
  • mq - Hirano et al.: Comprehensive transcriptome analysis of phytohormone biosynthesis and signaling genes in microspore/pollen and tapetum of rice. Plant & Cell Phys online early
  • mq - Souer et al.: Patterning of Inflorescences and Flowers by the F-Box Protein DOUBLE TOP and the LEAFY Homolog ABERRANT LEAF AND FLOWER of Petunia. Plant Cell online early
  • mq - Rubin: Genomics of cellulosic biofuels. Nature online early
  • mq - Lee et al.: Hormone- and light-regulated nucleocytoplasmic transport in plants: current status. Journal of Experimental Botany online early
  • mq - Gomez-Roldan et al.: Strigolactone inhibition of shoot branching. Nature online early
  • mq - Umehara et al.: Inhibition of shoot branching by new terpenoid plant hormones. Nature online early
  • mq - Simon et al.: Quantitative trait loci mapping in five new large recombinant inbred line populations of Arabidopsis thaliana genotyped with consensus single-nucleotide polymorphism markers. Genetics 178:2253
  • mq - Laserna et al.: Light-related Loci Controlling Seed Germination in Ler x Cvi and Bay-0 x Sha Recombinant Inbred-line Populations of Arabidopsis thaliana. Ann Bot online early
  • mq - Feraru/Friml: PIN Polar Targeting. Plant Phys 147:1553

07/08

  • mq - Raikhel: 2020 Vision for Biology: The Role of Plants in Addressing Grand Challenges in Biology. Molecular Plant 1:561
  • mq - Spoel and Dong: Making sense of hormone crosstalk during plant immune responses. Cell Host Microbe 3:348
  • mq - Cecchetti et al.: Auxin Regulates Arabidopsis Anther Dehiscence, Pollen Maturation, and Filament Elongation. Plant Cell online early
  • mq - Shindo et al.: Intraspecific competition reveals conditional fitness effects of single gene polymorphism at the Arabidopsis root growth regulator BRX. New Phytologist online early
  • mq - Bouchabke et al.: Natural variation in Arabidopsis thaliana as a tool for highlighting differential drought responses. PLoS1 3:e1705
  • mq - Swarup et al.: The auxin influx carrier LAX3 promotes lateral root emergence. Nature Cell Biology online early
  • mq - Vert et al.: Integration of auxin and brassinosteroid pathways by Auxin Response Factor 2. PNAS online early
  • mq - Zhang et al.: Genetic analysis of CAND1-CUL1 interactions in Arabidopsis supports a role for CAND1-mediated cycling of the SCFTIR1 complex. PNAS 105:8470-8475
  • cd - Müller and Sheen: Cytokinin and auxin interaction in root stem-cell specification during early embryogenesis. Nature 453: 1094-1097
  • cd - Dubrovsky et al.: Auxin acts as a local morphogenetic trigger to specify lateral root founder cells. PNAS 105: 8790-8794

06/08

  • mq - Francois et al.: Demographic History of European Populations of Arabidopsis thaliana. PLoS Genetics 4:e1000075.
  • mq - Harmon et al.: CUL1 regulates TOC1 protein stability in the Arabidopsis circadian clock. Plant Journal online early
  • mq - Ivanchenko et al.: Ethylene–auxin interactions regulate lateral root initiation and emergence in Arabidopsis thaliana. Plant Journal online early
  • mq - Benedito/Udvardi et al.: A gene expression atlas of the model legume Medicago truncatula. Plant Journal online early
  • mq - Llorente et al.: Repression of the Auxin Response Pathway Increases Arabidopsis Susceptibility to Necrotrophic Fungi. Molecular Plant 1:496

05/08

  • mq - Goda et al.: The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access. Plant Journal online early
  • mq - Lisec et al.: Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations. Plant Journal 53:960
  • mq - Negi et al.: Ethylene regulates lateral root formation and auxin transport in Arabidopsis thaliana. Plant Journal online early
  • cd - Schreiner et al.: Ubiquitin docking at the proteasome through a novel pleckstrin-homology domain interaction. Nature 453: 548-552
  • cd - Husnjak et al.: Proteasome subunit Rpn13 is a novel ubiquitin receptor. Nature 453: 481-488
  • mq - Kandasamy/Meagher et al.: ACTIN-RELATED PROTEIN8 Encodes an F-Box Protein Localized to the Nucleolus in Arabidopsis. Plant, Cell & Physiology 49:858 full text
  • mq - Baxter/Salt et al.: Variation in Molybdenum Content Across Broadly Distributed Populations of Arabidopsis thaliana Is Controlled by a Mitochondrial Molybdenum Transporter (MOT1). PLoS Genetics 4:e1000004
  • mq - Duan/Wu et al.: Characterization of a sub-family of Arabidopsis genes with the SPX domain reveals their diverse functions in plant tolerance to phosphorus starvation. Plant Journal online early
  • mq - Sicard et al.: Identification of quantitative trait loci controlling symptom development during viral infection in Arabidopsis thaliana. MPMI 21:198 abstract (pdf bei mir)

04/08

  • mq - Nilsson/Bhalearo et al.: Dissecting the Molecular Basis of the Regulation of Wood Formation by Auxin in Hybrid Aspen. Plant Cell online early
  • mq - Zeng et al.: Genetic analysis of the physiological responses to low boron stress in Arabidopsis thaliana. Genetic analysis of the physiological responses to low boron stress in Arabidopsis thaliana. Plant, Cell & Environment 31:12
  • mq - Kleine-Vehn/Friml et al.: ARF GEF-Dependent Transcytosis and Polar Delivery of PIN Auxin Carriers in Arabidopsis. Current Biology 18:526 abstract
  • mq - Groll et al.: A plant pathogen virulence factor inhibits the eukaryotic proteasome by a novel mechanism. Nature 452:755 abstract
  • cd - Hayashi et al.: Small-molecule agonists and antagonists of F-box protein–substrate interactions in auxin perception and signaling. PNAS 105:5632 abstract
  • mq - Tao/Chory et al.: Rapid Synthesis of Auxin via a New Tryptophan-Dependent Pathway Is Required for Shade Avoidance in Plants. Cell 133:164
  • mq - Stepanova/Alonso et al.: TAA1-Mediated Auxin Biosynthesis Is Essential for Hormone Crosstalk and Plant Development. Cell 133:177
  • mq - Ishihara/Wakasa et al.: The tryptophan pathway is involved in the defense responses of rice against pathogenic infection via serotonin production. Plant Journal online early

03/08

  • mq - Bainbridge/Kuhlemeier et al.: Auxin influx carriers stabilize phyllotactic patterning Genes & Development 22:810
  • mq - West/Michelmore et al.: High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis Genome Research 16:787
  • mq - Derbyshire/Dolan et al.: Proximal–distal patterns of transcription factor gene expression during Arabidopsis root development Journal of Experimental Botany 59:235
  • mq - Ongaro/Leyser et al.: Interactions between Axillary Branches of Arabidopsis Molecular Plant 1:388
  • mq - Papanov/Palme et al.: Comprehensive Transcriptome Analysis of Auxin Responses in Arabidopsis Molecular Plant 1:321
  • mq - Teale/Palme et al.: Auxin as a Model for the Integration of Hormonal Signal Processing and Transduction Molecular Plant 1:229
  • mq - Lisec/Wilmitzer et al.: Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations Plant Journal 53:960
  • mq - Salmon/Callis et al.: Degradation of the auxin response factor ARF1 Plant Journal 54:118
  • mq - Kliebenstein: A Role for Gene Duplication and Natural Variation of Gene Expression in the Evolution of Metabolism Plos1 3:e1838
  • mq - Szemenyei/Long et al.: TOPLESS Mediates Auxin-Dependent Transcriptional Repression During Arabidopsis Embryogenesis Science 319:384
  • mq - Hansen/Kliebenstein et al.: Identifying the molecular basis of QTLs: eQTLs add a new dimension TIPS 13:72
  • mq - van den Burg/Jones et al.: The F-Box Protein ACRE189/ACIF1 Regulates Cell Death and Defense Responses Activated during Pathogen Recognition in Tobacco and Tomato Plant Cell online early
  • mq - Zhang/Borevitz et al.: Global Analysis of Genetic, Epigenetic and Transcriptional Polymorphisms in Arabidopsis thaliana Using Whole Genome Tiling Arrays Plos Genetics 4:e1000032