RNA Extraction Protocol

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''Can also be used for DNA extraction by increasing phosphate buffer pH to ~8''
''Can also be used for DNA extraction by increasing phosphate buffer pH to ~8''
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''Change gloves often and use fume hood when working with phenol!''
''Change gloves often and use fume hood when working with phenol!''
==Day 1==
==Day 1==
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# Start centrifuge cooling with 50 mL tube holders
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# Add 5 mL of cold stop solution to a fresh 50 mL tube
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::(''stop solution'' = 5% buffer equilibrated phenol [pH 7.4] in ethanol)
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3. Add sample up to 50 mL
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4. Pellet sample by centrifugation at 5000 rpm for 10 min at 4°C
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::While centrifuging, prepare 2 ml screw-cap tubes (2 tubes per sample) with:
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:::*0.5 g of 0.1 mm zirconia-silica beads (Biospec products)
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:::*35 μl of SDS (20%) and 35 μl of sodium lauryl sarkosine (20%)
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:::*750 μl of phenol:chloroform:isoamylic alcohol (25:24:1)
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5. Remove samples from centrifuge.  '''''Keep on ice!''''' 
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6. Discard the supernatant fraction and add 1 ml of extraction buffer to the pellet 
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::(''extraction buffer = ''[10% CTAB in 2.5 M NaCl]:0.1 M phosphate buffer pH 5.8, 1:3)
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::Mix well and transfer 1mL aliquots into prepared 2 ml screw-cap tubes 
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7. Homogenise in a mini-beater (Biospec products) for 2 min  (3 min in less powerful beater)
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8. Centrifuge at 14000 rpm for 5 min at 4°C
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9. Transfer the upper aqueous phase into a new 2 mL tube 
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::Add 750µL chloroform:isoamylic alcohol (24:1)
 +
10. Centrifuge at 14000rpm for 5 min at 4oC.

Revision as of 19:52, 20 May 2013

Extraction Protocol modified from Griffiths et. al, 2000

Can also be used for DNA extraction by increasing phosphate buffer pH to ~8

Change gloves often and use fume hood when working with phenol!

Day 1

  1. Start centrifuge cooling with 50 mL tube holders
  2. Add 5 mL of cold stop solution to a fresh 50 mL tube
(stop solution = 5% buffer equilibrated phenol [pH 7.4] in ethanol)

3. Add sample up to 50 mL 4. Pellet sample by centrifugation at 5000 rpm for 10 min at 4°C

While centrifuging, prepare 2 ml screw-cap tubes (2 tubes per sample) with:
  • 0.5 g of 0.1 mm zirconia-silica beads (Biospec products)
  • 35 μl of SDS (20%) and 35 μl of sodium lauryl sarkosine (20%)
  • 750 μl of phenol:chloroform:isoamylic alcohol (25:24:1)

5. Remove samples from centrifuge. Keep on ice! 6. Discard the supernatant fraction and add 1 ml of extraction buffer to the pellet

(extraction buffer = [10% CTAB in 2.5 M NaCl]:0.1 M phosphate buffer pH 5.8, 1:3)
Mix well and transfer 1mL aliquots into prepared 2 ml screw-cap tubes

7. Homogenise in a mini-beater (Biospec products) for 2 min (3 min in less powerful beater) 8. Centrifuge at 14000 rpm for 5 min at 4°C 9. Transfer the upper aqueous phase into a new 2 mL tube

Add 750µL chloroform:isoamylic alcohol (24:1)

10. Centrifuge at 14000rpm for 5 min at 4oC.

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