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Publications PDF reprints are provided below within the context of fair use. Please obtain copies from the publisher if appropriate. Continuous control of flagellar gene expression by the σ28–FlgM regulatory circuit in Salmonella enterica Molecular Microbiology, November, 2010, Saini S, Floess E, Aldridge C, Brown J, Aldridge PD, Rao CV The interaction dynamics of a negative feedback loop regulates flagellar number in Salmonella enterica serovar Typhimurium Molecular Microbiology, 78(6):1416–1430, 2010, Aldridge1,C, Poonchareon K, Saini S, Soloyva A, Rao CV, Imada K, Minamino T, Aldridge PD Attractant binding induces distinct structural changes to the polar and lateral signaling clusters in Bacillus subtilis chemotaxis. Journal of Biological Chemistry, November 2010, Wu K, Walukiewicz HE, Glekas GD, Ordal GW, Rao CV Pubmed Site-specific methylation in Bacillus subtilis chemotaxis: The effect of covalent modifications to the chemotaxis receptor McpB. Microbiology, September 2010, Glekas GD, Cates JR, Cohen TM, Rao CV, Ordal GW Pubmed FliZ Induces a Kinetic Switch in Flagellar Gene Expression Journal of Bacteriology, 192(24):6477-81, 2010 Saini S, Koirala S, Floess E, Mears PJ, Chemla YR, Golding I, Aldridge C, Aldridge PD, Rao CV Pubmed Role of cross talk in regulating the dynamic expression of the flagellar Salmonella pathogenicity island 1 and type 1 fimbrial genes Journal of Bacteriology, 192(21):5767-77, 2010 Saini S, Slauch JM, Aldridge PD, Rao CV Pubmed The role of coupled positive feedback in the expression of the SPI1 type three secretion system in Salmonella PLoS Pathogens, 6(7):e1001025, 2010 Saini S, Ellermeier JR, Slauch JM, Rao CV Pubmed Aromatic acid metabolites of Escherichia coli K-12 can induce the marRAB operon Journal of Bacteriology, 92(18):4786-9, 2010 Chubiz LM, Rao CV Pubmed SprB is the molecular link between Salmonella pathogenicity island 1 (SPI1) and SPI4 Journal of Bacteriology, 192(9):2459-62, 2010 Saini S, Rao CV Pubmed A modular positive feedback-based gene amplifier Journal of Biological Engineering, 26;4:4, 2010 Nistala GJ, Wu K, Rao CV, Bhalerao KD Pubmed The role of configuration and coupling in autoregulatory gene circuits. Molecular Microbiology, 75(2):513-27, 2010 Wu K, Rao CV Pubmed Regulation of arabinose and xylose metabolism in Escherichia coli Applied and Environmental Microbiology, 76(5):1524-32, 2010 Desai TD, Rao CV Pubmed A PAS domain binds asparagine in the chemotaxis receptor McpB in Bacillus subtilis Journal of Biological Chemistry, 285(3):1870-8, 2010 Glekas GD, Foster RM, Cates JR, Estrella JA, Wawrzyniak MJ, Rao CV, Ordal GW Pubmed High-resolution, long-term characterization of bacterial motility using optical tweezers Nature Methods, 6(11):831-5, 2009 Min TL, Mears PJ, Chubiz LM, Rao CV, Golding I, Chemla YR Pubmed The molecular basis of excitation and adaptation during chemotactic sensory transduction in bacteria Contributions to Microbiology, 16:33-64, 2009 Rao CV, Ordal GW Pubmed Engineering transcription factors with novel DNA-binding specificity using comparative genomics Nucleic Acids Research, 37(8):2493-503, 2009 Desai TA, Rodionov DA, Gelfand MS, Alm EJ, Rao CV Pubmed Role of FimW, FimY, and FimZ in regulating the expression of type i fimbriae in Salmonella enterica serovar Typhimurium Journal of Bacteriology, 191(9):3003-10, 2009 Saini S, Pearl JA, Rao CV Pubmed Calling heads from tails: the role of mathematical modeling in understanding cell polarization Current Opinions in Cell Biology, 21(1):74-81, 2009 Onsum MD, Rao CV Pubmed The rate of protein secretion dictates the temporal dynamics of flagellar gene expression Molecular Microbiology, 70(4):924-37, 2008 Brown JD, Saini S, Aldridge C, Herbert J, Rao CV, Aldridge PD Pubmed The three adaptation systems of Bacillus subtilis chemotaxis Trends in Microbiology, 16(10):480-7, 2008 Rao CV, Glekas GD, Ordal GW Pubmed Computational design of orthogonal ribosomes Nucleic Acids Research, 36(12):4038-46, 2008 Chubiz LM, Rao CV Pubmed FliZ Is a posttranslational activator of FlhD4C2-dependent flagellar gene expression Journal of Bacteriology, 190(14):4979-88, 2008 Saini S, Brown JD, Aldridge PD, Rao CV Pubmed The Salmonella SPI1 type three secretion system responds to periplasmic disulfide bond status via the flagellar apparatus and the RcsCDB system Journal of Bacteriology, 190(1):87-97, 2008 Lin D, Rao CV, Slauch JM Pubmed A mathematical model for neutrophil gradient sensing and polarization PLoS Computational Biology, 116;3(3):e36, 2007 Onsum MD, Rao CV Pubmed Phosphatase localization in bacterial chemotaxis: divergent mechanisms, convergent principles Physical Biology, 14;2(3):148-58, 2005 Rao CV, Kirby JR, Arkin AP Pubmed An allosteric model for transmembrane signaling in bacterial chemotaxis Journal of Molecular Biology, 15;343(2):291-303, 2004 Rao CV, Frenklach M, Arkin AP Pubmed PDF Design and diversity in bacterial chemotaxis: a comparative study in Escherichia coli and Bacillus subtilis PLoS Biology, 2(2):E49, 2004 Rao CV, Kirby JR, Arkin AP Pubmed PDF Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the Gillespie algorithm Journal of Chemical Physics, 118(11):4999-5010, 2003 Rao CV, Kirby JR, Arkin AP Url PDF Constrained state estimation for nonlinear discrete-time systems: stability and moving horizon approximations IEEE Transactions on Automatic Control, 48(2):246-258, 2003 Rao CV, Rawlings JB, Mayne DQ PDF Control, exploitation and tolerance of intracellular noise Nature, 14;420(6912):246 - 258, 2002 Rao CV, Wolf DM, Arkin AP Pubmed PDF Control motifs for intracellular regulatory networks Annual Reviews in Biomedical Engineering, 3:391-419, 2001 Rao CV, Arkin AP Pubmed PDF Constrained Model Predictive Control: Stability and optimality Automatica, 36:789-814, 2000 Mayne DQ, Rawlings JB, Rao CV, Scokaert POM PDF Application of Interior-Point Methods to Model Predictive Control Journal of Optimization Theory and Applications, 99(3):723-757, 1998 Rao CV, Wright SJ, Rawlings JB PDF