References on engineering memory in living organisms: Difference between revisions

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=Note=
=Note=


Various attempts to implement memory in living organisms have undertaken on recent years. Here will be a descriptive overview, an soon a comparison of the different systems.
Various attempts to implement memory in living organisms have been made on recent years. Here will be a descriptive overview, an soon a comparison of the different systems.


=references=
=references=


For each reference, a short summary will be added soon.  
''In chronological order.  


****Gardner et al, 2000, a genetic toggle switch in e. coli. Nature [http://www.ncbi.nlm.nih.gov/pubmed/10659857?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum PMID: 10659857]


*2000- Gardner et al." '''Construction of a genetic toggle switch in e. coli.'''" Nature 2000 Jan 20;403(6767):339-42.Click here to read [http://www.ncbi.nlm.nih.gov/pubmed/10659857?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum PMID: 10659857]




****Invertase/flipase based systems [http://www.ncbi.nlm.nih.gov/pubmed/18665232?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum PMID 18665232] [http://en.wikipedia.org/wiki/Hin_recombinase URL] some [[Invertases/recombinases bibliography]]
*2001-Becskei et al. '''"Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion."''' EMBO J. 2001 May 15;20(10):2528-35.Click here to read [http://www.ncbi.nlm.nih.gov/pubmed/11350942?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum PMID 11350942]
**** Ajo-Frankil et al. Silver's lab [http://www.ncbi.nlm.nih.gov.gate1.inist.fr/pubmed/17875664?ordinalpos=13&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum PMID 17875664]
 
 
*2003- Atkinson et al. '''"Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli."'''  Cell. 2003 May 30;113(5):597-607.Click here to read [http://www.ncbi.nlm.nih.gov/pubmed/12787501?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum]
 
 
 
*2004- kramer et al. '''"An engineered epigenetic transgene switch in mammalian cells."''' Nat Biotechnol. 2004 Jul;22(7):867-70.Click here to read [http://www.ncbi.nlm.nih.gov/pubmed/15972812?ordinalpos=4itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum PMID 15184906]
 
 
*2005- Kramer and Fussenegger '''"Hysteresis in a synthetic mammalian gene network."''' PNAS 2005 Jul 5;102(27):9517-22. Epub 2005 Jun 22. Click here to read[http://www.ncbi.nlm.nih.gov/pubmed/15972812?ordinalpos=4itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum PMID 15972812]
 
 
* 2005 Vilaboa et al.,'''"Novel gene switches for targeted and timed expression of proteins of interest."'''  Mol Ther. 2005 Aug;12(2):290-8.Click here to read [http://www.ncbi.nlm.nih.gov/pubmed/15925546?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum PMID 15925546]
 
 
*2007 Ingolia and Murray, '''"Positive-feedback loops as a flexible biological module." Curr Biol. 2007 Jun 5;17(11):R410-2. click here to read [http://www.ncbi.nlm.nih.gov/pubmed/17398098?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum PMID 17398098]
 
 
 
 
*2007-2008- Ham et al. Invertase based systems  
**'''"inducible expression system utilizing the fim inversion recombination switch"'''. Biotechnol Bioeng. 2006 May 5;94(1):1-4. click here to read[http://www.ncbi.nlm.nih.gov/pubmed/16534780?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum]
 
** '''double inversion recombination switch''' [http://www.ncbi.nlm.nih.gov/pubmed/18665232?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum PMID 18665232]
 
**[http://en.wikipedia.org/wiki/Hin_recombinase URL]
 
**some [[Invertases/recombinases bibliography]]
 
 
 
* 2008- Ajo-Franklin et al. '''"Rational design of memory in eukaryotic cells"'''.  Genes Dev. 2007 Sep 15;21(18):2271-6. click here to read[http://www.ncbi.nlm.nih.gov/pubmed/17875664?ordinalpos=13&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum   PMID 17875664]


=Comparison of the different memory mechanisms used=
=Comparison of the different memory mechanisms used=
''Back to [http://openwetware.org/wiki/User:Jerome_Bonnet/Notebook/Genetically_encoded_memory Jerome's notebook] ''
''Back to [http://openwetware.org/wiki/Endy:Notebook/Genetic_Memory Endy genetic memory notebook] ''

Latest revision as of 23:23, 5 November 2009

Note

Various attempts to implement memory in living organisms have been made on recent years. Here will be a descriptive overview, an soon a comparison of the different systems.

references

In chronological order.


  • 2000- Gardner et al." Construction of a genetic toggle switch in e. coli." Nature 2000 Jan 20;403(6767):339-42.Click here to read PMID: 10659857


  • 2001-Becskei et al. "Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion." EMBO J. 2001 May 15;20(10):2528-35.Click here to read PMID 11350942


  • 2003- Atkinson et al. "Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli." Cell. 2003 May 30;113(5):597-607.Click here to read [1]


  • 2004- kramer et al. "An engineered epigenetic transgene switch in mammalian cells." Nat Biotechnol. 2004 Jul;22(7):867-70.Click here to read PMID 15184906


  • 2005- Kramer and Fussenegger "Hysteresis in a synthetic mammalian gene network." PNAS 2005 Jul 5;102(27):9517-22. Epub 2005 Jun 22. Click here to readPMID 15972812


  • 2005 Vilaboa et al.,"Novel gene switches for targeted and timed expression of proteins of interest." Mol Ther. 2005 Aug;12(2):290-8.Click here to read PMID 15925546


  • 2007 Ingolia and Murray, "Positive-feedback loops as a flexible biological module." Curr Biol. 2007 Jun 5;17(11):R410-2. click here to read PMID 17398098



  • 2007-2008- Ham et al. Invertase based systems
    • "inducible expression system utilizing the fim inversion recombination switch". Biotechnol Bioeng. 2006 May 5;94(1):1-4. click here to read[2]


  • 2008- Ajo-Franklin et al. "Rational design of memory in eukaryotic cells". Genes Dev. 2007 Sep 15;21(18):2271-6. click here to readPMID 17875664

Comparison of the different memory mechanisms used

Back to Jerome's notebook

Back to Endy genetic memory notebook

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