Registry of Standard Biological Models

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*To contribute to the Open Source [[Synthetic Biology]] effort.
*To contribute to the Open Source [[Synthetic Biology]] effort.
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*To store, curate and support models related to physical DNA Biobricks.
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*To store, curate and support models related to [http://parts.mit.edu physical Biobricks].
*To drive and guide the experimental characterization of BioBricks.
*To drive and guide the experimental characterization of BioBricks.
*To enable the reuse of modular part models.
*To enable the reuse of modular part models.

Revision as of 10:32, 26 September 2007

A collection of models of biological parts that can be reused and recombined to produce more complex models. A draft implementation of the registry is underway and collaborators are being sought.
Talk to us at - BioSysBio 2007, iGEM Jamboree Workshop 2007
Goals
  • To contribute to the Open Source Synthetic Biology effort.
  • To store, curate and support models related to physical Biobricks.
  • To drive and guide the experimental characterization of BioBricks.
  • To enable the reuse of modular part models.
  • To provide a forum for modelers to contribute to the BioBricks effort.
Activities
  • Defining Standard Biological Models
  • Building a collection of standard biological models.
  • Define a modeling description language that is:
    • Machine readable (XML, RDF)
    • Capable of describing gene expression networks
    • Modular (standardized defined inputs/ouputs)
    • Hierarchical (models are composable)
    • Capable of describing models that can be related to experimental data.
Recent edits:



  • See this page for a draft implementation.
  • See this page for a draft on model implementations following CellML 1.1.
  • See this page to access current discussion on the implementation.
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