Registry of Standard Biological Models

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
Line 48: Line 48:
</div>
</div>
<hr class="divider2">
<hr class="divider2">
-
 
-
 
*See [[Registry of Standard Biological Models/CellML Practical|this page]] for a draft implementation.
*See [[Registry of Standard Biological Models/CellML Practical|this page]] for a draft implementation.
*See [[Registry_of_Standard_Biological_Models/Basic_Component_Models|this page]] for a draft on model implementations following CellML 1.1.
*See [[Registry_of_Standard_Biological_Models/Basic_Component_Models|this page]] for a draft on model implementations following CellML 1.1.
*See [[Registry of Standard Biological Models/General Architecture Discussion|this page]] to access current discussion on the implementation.
*See [[Registry of Standard Biological Models/General Architecture Discussion|this page]] to access current discussion on the implementation.

Revision as of 09:44, 26 September 2007

A collection of models of biological parts that can be reused and recombined to produce more complex models. A draft implementation of the registry is underway and collaborators are being sought.
Talk to us at - BioSysBio 2007, iGEM Jamboree Workshop 2007
Goals
  • To contribute to the Open Source Synthetic Biology effort.
  • To store, curate and support models related to physical Biobricks.
  • To drive and guide the experimental characterization of BioBricks.
  • To enable the reuse of modular part models.
  • To provide a forum for modelers to contribute to the BioBricks effort.
Activities
  • Defining Standard Biological Models
  • Building a collection of standard biological models.
  • Define a modeling description language that is:
    • Machine readable (XML, RDF)
    • Capable of describing gene expression networks
    • Modular (standardized defined inputs/ouputs)
    • Hierarchical (models are composable)
    • Capable of describing models that can be related to experimental data.

Recent edits:



  • See this page for a draft implementation.
  • See this page for a draft on model implementations following CellML 1.1.
  • See this page to access current discussion on the implementation.
Personal tools