Registry of Standard Biological Models

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
<div>
<div>
-
{|class="white" cellspacing="5"
+
{|class="white" cellspacing="5" valign="top"
|colspan=2|{{Click || image=RoSBMBanner.png | link=Main_Page| width=705px | height=94px }}
|colspan=2|{{Click || image=RoSBMBanner.png | link=Main_Page| width=705px | height=94px }}
|-  
|-  
Line 13: Line 13:
|}
|}
|-
|-
-
|width="350px" class="blue" |
+
|width="350px" class="blue" valign="top" |
-
{|width="95%" class="blue" align="center" style="border:0px" cellspacing="0"
+
{|width="95%" class="blue" align="center" valign="top" style="border:0px" cellspacing="0"
|'''Goals'''
|'''Goals'''
*To contribute to the Open Source [[Synthetic Biology]] effort.
*To contribute to the Open Source [[Synthetic Biology]] effort.
Line 22: Line 22:
*To provide a forum for modelers to contribute to the BioBricks effort.
*To provide a forum for modelers to contribute to the BioBricks effort.
|}
|}
-
|width="350px" class="blue" |
+
|width="350px" class="blue" valign="top" |
-
{|width="95%" class="blue" align="center" style="border:0px" cellspacing="0"
+
{|width="95%" class="blue" align="center" valign="top" style="border:0px" cellspacing="0"
|'''Activities'''
|'''Activities'''
*[[/Registry organization|Planning]] the architecture of a registry of Standard Biological Models.
*[[/Registry organization|Planning]] the architecture of a registry of Standard Biological Models.

Revision as of 10:54, 26 September 2007

A collection of models of biological parts that can be freely reused and composed with each other to produce more complex models. A draft implementation of the registry is underway and collaborators are being sought.
Talk to us at - BioSysBio 2007, iGEM Jamboree Workshop 2007
Goals
  • To contribute to the Open Source Synthetic Biology effort.
  • To store, curate and support models related to physical Biobricks.
  • To drive and guide the experimental characterization of BioBricks.
  • To enable the reuse of modular part models.
  • To provide a forum for modelers to contribute to the BioBricks effort.
Activities
  • Planning the architecture of a registry of Standard Biological Models.
  • Building a collection of standard biological models.
  • Define a modeling description language that is:
    • Machine readable (XML, RDF)
    • Capable of describing gene expression networks
    • Modular (standardized defined inputs/ouputs)
    • Hierarchical (models are composable)
    • Capable of describing models that can be related to experimental data.
Recent edits:


  • See this page for a draft implementation.
  • See this page for a draft on model implementations following CellML 1.1.
Retrieved from "http://www.openwetware.org/wiki/Registry_of_Standard_Biological_Models"
Personal tools