Registry of Standard Biological Models

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|align="center"|'''Talk to us at''' - [[BioSysBio:abstracts/2007/Vincent_Rouilly | '''BioSysBio 2007''']], [[Registry of Standard Biological Models/Presentation | '''iGEM Jamboree Workshop 2007''']]  
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|align="center"|'''Talk to us at''' - [[BioSysBio:abstracts/2007/Vincent_Rouilly | '''BioSysBio 2007''']], [http://www.syntheticbiology.ethz.ch/conf_2007 SB3.0], and [[Registry of Standard Biological Models/Presentation | '''iGEM Jamboree Workshop 2007''']]  
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|'''Goals'''
|'''Goals'''
*To contribute to the Open Source [[Synthetic Biology]] effort.
*To contribute to the Open Source [[Synthetic Biology]] effort.
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*To provide a forum for modelers to contribute to the BioBricks effort.
*To provide a forum for modelers to contribute to the BioBricks effort.
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|'''Activities'''
|'''Activities'''
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*[[/Registry organization|Planning]] the architecture of a registry of Standard Biological Models.
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*[[/Registry organization|Planning]] the architecture of a registry of standard biological models.
*Building a [[Registry of Standard Biological Models/Model Catalog|collection]] of standard biological models.
*Building a [[Registry of Standard Biological Models/Model Catalog|collection]] of standard biological models.
*Define a modeling description language that is:
*Define a modeling description language that is:
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**Machine readable (XML, RDF)
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**Machine readable
**Capable of describing gene expression networks
**Capable of describing gene expression networks
**Modular (standardized defined inputs/ouputs)
**Modular (standardized defined inputs/ouputs)

Current revision

A collection of models of biological parts that can be freely reused and composed with each other to produce more complex models. A draft implementation of the registry is underway and collaborators are being sought.
Talk to us at - BioSysBio 2007, SB3.0, and iGEM Jamboree Workshop 2007
Goals
  • To contribute to the Open Source Synthetic Biology effort.
  • To store, curate and support models related to physical Biobricks.
  • To drive and guide the experimental characterization of BioBricks.
  • To enable the reuse of modular part models.
  • To provide a forum for modelers to contribute to the BioBricks effort.
Activities
  • Planning the architecture of a registry of standard biological models.
  • Building a collection of standard biological models.
  • Define a modeling description language that is:
    • Machine readable
    • Capable of describing gene expression networks
    • Modular (standardized defined inputs/ouputs)
    • Hierarchical (models are composable)
    • Capable of describing models that can be related to experimental data.

Recent edits:



  • See this page for a draft implementation.
  • See this page for a draft on model implementations following CellML 1.1.
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