Registry of Standard Biological Models - Revision history

Barry Canton at 21:49, 4 October 2007

Barry Canton — Thu, 04 Oct 2007 21:49:38 GMT

←Older revision		Revision as of 21:49, 4 October 2007
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	\|colspan=2 width="705px" class="blue"\|		\|colspan=2 width="705px" class="blue"\|
	{\|width="95%" class="blue" align="center" style="border:0px" cellspacing="0"		{\|width="95%" class="blue" align="center" style="border:0px" cellspacing="0"
-	\|align="center"\|'''Talk to us at''' - [[BioSysBio:abstracts/2007/Vincent_Rouilly \| '''BioSysBio 2007''']], [[Registry of Standard Biological Models/Presentation \| '''iGEM Jamboree Workshop 2007''']]	+	\|align="center"\|'''Talk to us at''' - [[BioSysBio:abstracts/2007/Vincent_Rouilly \| '''BioSysBio 2007''']], [http://www.syntheticbiology.ethz.ch/conf_2007 SB3.0], and [[Registry of Standard Biological Models/Presentation \| '''iGEM Jamboree Workshop 2007''']]
	\|}		\|}
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Barry Canton at 14:59, 26 September 2007

Barry Canton — Wed, 26 Sep 2007 14:59:42 GMT

←Older revision		Revision as of 14:59, 26 September 2007
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	*Building a [[Registry of Standard Biological Models/Model Catalog\|collection]] of standard biological models.		*Building a [[Registry of Standard Biological Models/Model Catalog\|collection]] of standard biological models.
	*Define a modeling description language that is:		*Define a modeling description language that is:
-	**Machine readable ~~(XML, RDF)~~	+	**Machine readable
	**Capable of describing gene expression networks		**Capable of describing gene expression networks
	**Modular (standardized defined inputs/ouputs)		**Modular (standardized defined inputs/ouputs)

Barry Canton at 14:54, 26 September 2007

Barry Canton — Wed, 26 Sep 2007 14:54:55 GMT

←Older revision		Revision as of 14:54, 26 September 2007
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	{\|width="95%" class="blue" align="center" valign="top" style="border:0px" cellspacing="0"		{\|width="95%" class="blue" align="center" valign="top" style="border:0px" cellspacing="0"
	\|'''Activities'''		\|'''Activities'''
-	*[[/Registry organization\|Planning]] the architecture of a registry of ~~Standard Biological Models~~.	+	*[[/Registry organization\|Planning]] the architecture of a registry of standard biological models.
	*Building a [[Registry of Standard Biological Models/Model Catalog\|collection]] of standard biological models.		*Building a [[Registry of Standard Biological Models/Model Catalog\|collection]] of standard biological models.
	*Define a modeling description language that is:		*Define a modeling description language that is:

Barry Canton at 14:54, 26 September 2007

Barry Canton — Wed, 26 Sep 2007 14:54:14 GMT

←Older revision		Revision as of 14:54, 26 September 2007
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	<div>		<div>
-	{\|class="white" cellspacing="5"	+	{\|class="white" cellspacing="5" valign="top"
	\|colspan=2\|{{Click \|\| image=RoSBMBanner.png \| link=Main_Page\| width=705px \| height=94px }}		\|colspan=2\|{{Click \|\| image=RoSBMBanner.png \| link=Main_Page\| width=705px \| height=94px }}
	\|-		\|-
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	\|}		\|}
	\|-		\|-
-	\|width="350px" class="blue" \|	+	\|width="350px" class="blue" valign="top" \|
-	{\|width="95%" class="blue" align="center" style="border:0px" cellspacing="0"	+	{\|width="95%" class="blue" align="center" valign="top" style="border:0px" cellspacing="0"
	\|'''Goals'''		\|'''Goals'''
	*To contribute to the Open Source [[Synthetic Biology]] effort.		*To contribute to the Open Source [[Synthetic Biology]] effort.
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	*To provide a forum for modelers to contribute to the BioBricks effort.		*To provide a forum for modelers to contribute to the BioBricks effort.
	\|}		\|}
-	\|width="350px" class="blue" \|	+	\|width="350px" class="blue" valign="top" \|
-	{\|width="95%" class="blue" align="center" style="border:0px" cellspacing="0"	+	{\|width="95%" class="blue" align="center" valign="top" style="border:0px" cellspacing="0"
	\|'''Activities'''		\|'''Activities'''
	*[[/Registry organization\|Planning]] the architecture of a registry of Standard Biological Models.		*[[/Registry organization\|Planning]] the architecture of a registry of Standard Biological Models.

Barry Canton at 14:52, 26 September 2007

Barry Canton — Wed, 26 Sep 2007 14:52:36 GMT

←Older revision		Revision as of 14:52, 26 September 2007
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	\|colspan=2 width="705px" bgcolor="#181860" \|		\|colspan=2 width="705px" bgcolor="#181860" \|
	{\|width="90%" bgcolor="#181860" align="center" style="border:0px" cellspacing="0"		{\|width="90%" bgcolor="#181860" align="center" style="border:0px" cellspacing="0"
-	\|bgcolor="#181860"\|<font face="tahoma" size="2" color=#ffffff>A collection of models of biological parts that can be reused and ~~recombined~~ to produce more complex models. A draft implementation of the registry is underway and collaborators are being sought.</font>	+	\|bgcolor="#181860"\|<font face="tahoma" size="2" color=#ffffff>A collection of models of biological parts that can be freely reused and composed with each other to produce more complex models. A draft implementation of the registry is underway and collaborators are being sought.</font>
	\|}		\|}
	\|-		\|-

Barry Canton at 14:49, 26 September 2007

Barry Canton — Wed, 26 Sep 2007 14:49:04 GMT

←Older revision		Revision as of 14:49, 26 September 2007
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	*See [[Registry of Standard Biological Models/CellML Practical\|this page]] for a draft implementation.		*See [[Registry of Standard Biological Models/CellML Practical\|this page]] for a draft implementation.
	*See [[Registry_of_Standard_Biological_Models/Basic_Component_Models\|this page]] for a draft on model implementations following CellML 1.1.		*See [[Registry_of_Standard_Biological_Models/Basic_Component_Models\|this page]] for a draft on model implementations following CellML 1.1.
-	*See [[Registry of Standard Biological Models/General Architecture Discussion\|this page]] to access current discussion on the implementation.

Barry Canton at 14:48, 26 September 2007

Barry Canton — Wed, 26 Sep 2007 14:48:45 GMT

←Older revision		Revision as of 14:48, 26 September 2007
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	{\|width="95%" class="blue" align="center" style="border:0px" cellspacing="0"		{\|width="95%" class="blue" align="center" style="border:0px" cellspacing="0"
	\|'''Activities'''		\|'''Activities'''
-	*~~Defining~~ Standard Biological Models	+	*[[/Registry organization\|Planning]] the architecture of a registry of Standard Biological Models.
	*Building a [[Registry of Standard Biological Models/Model Catalog\|collection]] of standard biological models.		*Building a [[Registry of Standard Biological Models/Model Catalog\|collection]] of standard biological models.
	*Define a modeling description language that is:		*Define a modeling description language that is:

Barry Canton at 14:44, 26 September 2007

Barry Canton — Wed, 26 Sep 2007 14:44:54 GMT

←Older revision		Revision as of 14:44, 26 September 2007
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	</div>		</div>
	<hr class="divider2">		<hr class="divider2">
-
-

	*See [[Registry of Standard Biological Models/CellML Practical\|this page]] for a draft implementation.		*See [[Registry of Standard Biological Models/CellML Practical\|this page]] for a draft implementation.
	*See [[Registry_of_Standard_Biological_Models/Basic_Component_Models\|this page]] for a draft on model implementations following CellML 1.1.		*See [[Registry_of_Standard_Biological_Models/Basic_Component_Models\|this page]] for a draft on model implementations following CellML 1.1.
	*See [[Registry of Standard Biological Models/General Architecture Discussion\|this page]] to access current discussion on the implementation.		*See [[Registry of Standard Biological Models/General Architecture Discussion\|this page]] to access current discussion on the implementation.

Barry Canton at 14:44, 26 September 2007

Barry Canton — Wed, 26 Sep 2007 14:44:40 GMT

←Older revision		Revision as of 14:44, 26 September 2007
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	<div>		<div>
-	{\|class="white" cellspacing="3"	+	{\|class="white" cellspacing="5"
-	\|{{Click \|\| image=RoSBMBanner.png \| link=Main_Page\| width=705px \| height=94px }}	+	\|colspan=2\|{{Click \|\| image=RoSBMBanner.png \| link=Main_Page\| width=705px \| height=94px }}
	\|-		\|-
-	\|width="705px" bgcolor="#181860" \|	+	\|colspan=2 width="705px" bgcolor="#181860" \|
	{\|width="90%" bgcolor="#181860" align="center" style="border:0px" cellspacing="0"		{\|width="90%" bgcolor="#181860" align="center" style="border:0px" cellspacing="0"
	\|bgcolor="#181860"\|<font face="tahoma" size="2" color=#ffffff>A collection of models of biological parts that can be reused and recombined to produce more complex models. A draft implementation of the registry is underway and collaborators are being sought.</font>		\|bgcolor="#181860"\|<font face="tahoma" size="2" color=#ffffff>A collection of models of biological parts that can be reused and recombined to produce more complex models. A draft implementation of the registry is underway and collaborators are being sought.</font>
	\|}		\|}
		+	\|-
		+	\|colspan=2 width="705px" class="blue"\|
		+	{\|width="95%" class="blue" align="center" style="border:0px" cellspacing="0"
		+	\|align="center"\|'''Talk to us at''' - [[BioSysBio:abstracts/2007/Vincent_Rouilly \| '''BioSysBio 2007''']], [[Registry of Standard Biological Models/Presentation \| '''iGEM Jamboree Workshop 2007''']]
	\|}		\|}
-
-	~~{\| cellspacing="3"~~
	\|-		\|-
-	\|~~colspan=2~~ width="~~700px~~" class="blue"\| ~~'''Talk to us at''' - [[BioSysBio:abstracts/2007/Vincent_Rouilly \| '''BioSysBio 2007''']], [[Registry of Standard Biological Models/Presentation \| '''iGEM Jamboree Workshop 2007''']]~~	+	\|width="350px" class="blue" \|
-	\|-	+	{\|width="95%" class="blue" align="center" style="border:0px" cellspacing="0"
-	\|width="~~350px~~" class="blue" \| '''Goals'''	+	\|'''Goals'''
-		+
	*To contribute to the Open Source [[Synthetic Biology]] effort.		*To contribute to the Open Source [[Synthetic Biology]] effort.
	*To store, curate and support models related to [http://parts.mit.edu physical Biobricks].		*To store, curate and support models related to [http://parts.mit.edu physical Biobricks].
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	*To enable the reuse of modular part models.		*To enable the reuse of modular part models.
	*To provide a forum for modelers to contribute to the BioBricks effort.		*To provide a forum for modelers to contribute to the BioBricks effort.
-		+	\|}
-	\|width="350px" class="blue" \| '''Activities'''	+	\|width="350px" class="blue" \|
		+	{\|width="95%" class="blue" align="center" style="border:0px" cellspacing="0"
		+	\|'''Activities'''
	*Defining Standard Biological Models		*Defining Standard Biological Models
	*Building a [[Registry of Standard Biological Models/Model Catalog\|collection]] of standard biological models.		*Building a [[Registry of Standard Biological Models/Model Catalog\|collection]] of standard biological models.
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	**Hierarchical (models are composable)		**Hierarchical (models are composable)
	**Capable of describing models that can be related to experimental data.		**Capable of describing models that can be related to experimental data.
		+	\|}
	\|-		\|-
	\|}		\|}

Barry Canton at 14:32, 26 September 2007

Barry Canton — Wed, 26 Sep 2007 14:32:10 GMT

←Older revision		Revision as of 14:32, 26 September 2007
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	*To contribute to the Open Source [[Synthetic Biology]] effort.		*To contribute to the Open Source [[Synthetic Biology]] effort.
-	*To store, curate and support models related to physical ~~DNA~~ Biobricks.	+	*To store, curate and support models related to [http://parts.mit.edu physical Biobricks].
	*To drive and guide the experimental characterization of BioBricks.		*To drive and guide the experimental characterization of BioBricks.
	*To enable the reuse of modular part models.		*To enable the reuse of modular part models.

←Older revision		Revision as of 14:49, 26 September 2007
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	*See [[Registry of Standard Biological Models/CellML Practical\|this page]] for a draft implementation.		*See [[Registry of Standard Biological Models/CellML Practical\|this page]] for a draft implementation.
	*See [[Registry_of_Standard_Biological_Models/Basic_Component_Models\|this page]] for a draft on model implementations following CellML 1.1.		*See [[Registry_of_Standard_Biological_Models/Basic_Component_Models\|this page]] for a draft on model implementations following CellML 1.1.
-	*See [[Registry of Standard Biological Models/General Architecture Discussion\|this page]] to access current discussion on the implementation.