Registry of Standard Biological Models/Basic Component Models: Difference between revisions
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***[[Registry of Standard Biological Models/Basic_Component_Models/Repressed_mRNA_Protein_Expression_Dynamic|Repressed_mRNA_Protein_Expression_Dynamic]] -> RepressedPromoter + mRNA + RBS + Protein | ***[[Registry of Standard Biological Models/Basic_Component_Models/Repressed_mRNA_Protein_Expression_Dynamic|Repressed_mRNA_Protein_Expression_Dynamic]] -> RepressedPromoter + mRNA + RBS + Protein | ||
**Protein dynamic modeling using quasi steady state approx on mRNA | **Protein dynamic modeling using quasi steady state approx on mRNA | ||
***[[Registry of Standard Biological Models/Basic_Component_Models/Constitutive_Protein_Expression_Dynamic| | ***[[Registry of Standard Biological Models/Basic_Component_Models/Constitutive_Protein_Expression_Dynamic|Constitutive_Protein_Expression_Dynamic]] -> ConstitutivePromoter_RBS_Coupled + Protein | ||
***[[Registry of Standard Biological Models/Basic_Component_Models/Activated_Protein_Expression_Dynamic| | ***[[Registry of Standard Biological Models/Basic_Component_Models/Activated_Protein_Expression_Dynamic|Activated_Protein_Expression_Dynamic]] -> ActivatedPromoter_RBS_Coupled + Protein | ||
***[[Registry of Standard Biological Models/Basic_Component_Models/Repressed_Protein_Expression_Dynamic| | ***[[Registry of Standard Biological Models/Basic_Component_Models/Repressed_Protein_Expression_Dynamic|Repressed_Protein_Expression_Dynamic]] -> RepressedPromoter_RBS_Coupled + Protein | ||
*[[Registry of Standard Biological Models/Basic_Component_Models/Inverter|Inverter]] | *[[Registry of Standard Biological Models/Basic_Component_Models/Inverter|Inverter]] | ||
*[[Registry of Standard Biological Models/Basic_Component_Models/Oscillator|Oscillator]] | *[[Registry of Standard Biological Models/Basic_Component_Models/Oscillator|Oscillator]] |
Revision as of 12:59, 7 September 2006
Here is a list of basic components available in the DNA Registry, each link intends to illustrate different modeling approaches and CellML descriptions:
- Building blocks:
- attempt to fuse RBS and mRNA concepts together. it could show a more universal interface, equivalent to the promoter_RBS_coupled
- Gene expression modeling (using the IMPORT of the previously defined building blocks):
- mRNA and protein full dynamic modeling
- Constitutive_mRNA_Protein_Expression_Dynamic -> ConstitutivePromoter + mRNA + RBS + Protein
- Activated_mRNA_Protein_Expression_Dynamic -> ActivatedPromoter + mRNA + RBS + Protein
- Repressed_mRNA_Protein_Expression_Dynamic -> RepressedPromoter + mRNA + RBS + Protein
- Protein dynamic modeling using quasi steady state approx on mRNA
- Constitutive_Protein_Expression_Dynamic -> ConstitutivePromoter_RBS_Coupled + Protein
- Activated_Protein_Expression_Dynamic -> ActivatedPromoter_RBS_Coupled + Protein
- Repressed_Protein_Expression_Dynamic -> RepressedPromoter_RBS_Coupled + Protein
- mRNA and protein full dynamic modeling