Registry of Standard Biological Models/Basic Component Models/BioBrick Environment: Difference between revisions
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== | ==BioBrick Environment Architecture== | ||
{| border="1" | |||
| | |||
*'''Description''': BioBrick environment model to define time and units used in simulations | *'''Description''': BioBrick environment model to define time and units used in simulations | ||
*'''Hypothesis''': | *'''Hypothesis''': | ||
Line 8: | Line 10: | ||
*'''Outputs''': | *'''Outputs''': | ||
**time | **time | ||
*'''Characteristic parameters''': | |||
**Unit: zero order reaction | |||
**Unit: first order reaction | |||
**Unit: second order reaction | |||
**Unit: molarity | |||
**Unit: ... | |||
| align= "center" | [[Image:VBB_Environment.png|thumb|left|300px|Environment Brick Architecture]] | |||
|} | |||
==CellML structure (CellML 1.1 spec)== | ==CellML structure (CellML 1.1 spec)== | ||
*'''Component''': | *'''Component''': Environment | ||
*'''Units''': | *'''Units''': | ||
** | **Zero order reaction | ||
**First order reaction | |||
**Second order reaction | |||
*'''Variables''': | *'''Variables''': | ||
**time | **time (public interface = out / initial value = 0.) | ||
*'''MathML''' | *'''MathML''' | ||
**none | **none |
Latest revision as of 08:10, 9 September 2006
BioBrick Environment Architecture
|
CellML structure (CellML 1.1 spec)
- Component: Environment
- Units:
- Zero order reaction
- First order reaction
- Second order reaction
- Variables:
- time (public interface = out / initial value = 0.)
- MathML
- none
Examples
BioBricks from Registry | CellML file |
---|---|
not applicable | Media:BioBrick_Environment_Model.xml |
not applicable | other environment |
Comments
- This component is used to promote consistency in the use of units across all the other components (import mechanism)
- This component defines the time in our simulations.